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Home > SCOP hierarchy > TorD-like > Alignments

TorD-like alignments

These alignments are sequences aligned to the 0041186 model.

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Alignments

The numbers along the top are the segment numbers of the HMM states, and each sequence is seperately aligned to the model.
The first sequence is the seed the model was built from.
Upper case letters are aligned, lower case letters are insertions, '-' signifies a deletion and '.' is nothing.

                                                                                10        20        
                                                                                 |         |        
d1n1ca_ ...............................................................v-DINPARALVYQLLSSLFAREVDE....
d1s9ua_ .....................................................sdamttflqrd-----EFAVTARVLGALFYYSPESheta
d2idga1 mtigrakvyatlskifyhlfydeaipkdcreiiekfgeidfnlrsvlvrelrgsvlikdmpqsl------------------------....
d2o9xa1 ............................................................mreh----------LKLFSLIFSY-PDE....


            30        40        50        60        70        80         90       100       110     
             |         |         |         |         |         |          |         |         |     
d1n1ca_ QRLKELTSEAAQQFWEQLSLEANFTQSVDKIRSTLNGIKDDEALLELAADYCGLFL.VGTKHSASPYASLYLSGEDEPLLFGEQHQQMSEFL
d1s9ua_ PLVQALLNDDWQAQWPLDAE----------ALAPVAAMFKTHSEESLPQAWQRLFI.GPYALPSPPWGSVWLDRE--SVLFGDSTLALRQWM
d2idga1 --------------------------------------------------------.------AEVYES-----------------VMKDFY
d2o9xa1 DKL-----GKAIALAEGIGLTE------------IAQTLKQVDIEALQVEYTSLFIsSHPSVPCPPYQSYFEE----GSVYGKASLRAAELY


          120       130       140               150             160       170       180       190   
            |         |         |                 |               |         |         |         |   
d1n1ca_ HQSKLQVQSHFPEPADHLAVMLAYMAHLCCH........SENS......VQLSFLQTCVNSWLAKFINHLTQCNKNGFYSAVATLTLAWVKQ
d1s9ua_ RENGIQFEMQQNEPEDHFGSLLLLAAWLAEN........DRHH......ECEQLLAWHLFPWSSRFLDVFIDHAGHPFYQALGQLARLTLAQ
d2idga1 ERYGFQASEL---HADHIAVELAFMSKLVEReislaqqmKEEElykiraAQHRFIKAHLQPLVKNL--------------------------
d2o9xa1 SKYGLNYVYE-SEPPDHISVELEFLSM----........-NPE......LLSDF-----RDWFLEFAKCVEEKS--EIYATFARAFRKFLE-


            200                            
              |                            
d1n1ca_ DIAQLEPAVA----iisl.................
d1s9ua_ WQAQLII-------pvavkplfr............
d2idga1 --------------psapllnfvrdfvredakyly
d2o9xa1 --------------k....................


Statistics on alignment.	Save alignment.

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Refine alignments

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Members of the same:	including
Include all superfamily members:	, or just those assigned by the selected model:
Initial T99 seed sequence:	NoYes

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Model: 0041186 (list models)

Initial SAMT99 seed:
Alignment:

Display Options:

Output in FASTA-like format:	NoYes
Output column indices:	NoYes
Sequence index (number) on each line:	NoYes

Max number of insertions shown:	(0 does not show insertions)
Characters per line:
Character to show inserts:
Maximum number of sequences:
Exclude sequences shorter than:	residues

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Add alignments from genomes

Select below additional genomes you would like to see alignments for, then click on 'Re-Submit'. The genome assignments will be added to this page.

Select to display	Genome
NoYes	Lucilia cuprina - Australian sheep blowfly
NoYes	Thelohanellus kitauei
NoYes	Amphimedon queenslandica
NoYes	Aspergillus zonatus v1.0
NoYes	Conexibacter woesei DSM 14684
NoYes	Cryptobacterium curtum DSM 15641
NoYes	Eggerthella sp. YY7918
NoYes	Eggerthella lenta DSM 2243
NoYes	Slackia heliotrinireducens DSM 20476
NoYes	Rubrobacter xylanophilus DSM 9941
NoYes	Acidimicrobium ferrooxidans DSM 10331
NoYes	Nakamurella multipartita DSM 44233
NoYes	Acidothermus cellulolyticus 11B
NoYes	Blastococcus saxobsidens DD2
NoYes	Catenulispora acidiphila DSM 44928
NoYes	Stackebrandtia nassauensis DSM 44728
NoYes	Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111
NoYes	Streptosporangium roseum DSM 43021
NoYes	Streptomyces coelicolor A3(2)
NoYes	Streptomyces bingchenggensis BCW-1
NoYes	Streptomyces cattleya NRRL 8057 = DSM 46488
NoYes	Streptomyces scabiei 87.22
NoYes	Streptomyces hygroscopicus subsp. jinggangensis 5008
NoYes	Actinosynnema mirum DSM 43827
NoYes	Pseudonocardia dioxanivorans CB1190
NoYes	Saccharopolyspora erythraea NRRL 2338
NoYes	Kribbella flavida DSM 17836
NoYes	Nocardioides sp. JS614
NoYes	Propionibacterium propionicum F0230a
NoYes	Propionibacterium acnes SK137
NoYes	Microlunatus phosphovorus NM-1
NoYes	Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1
NoYes	Salinispora arenicola CNS-205
NoYes	Salinispora tropica CNB-440
NoYes	Micromonospora sp. L5
NoYes	Micromonospora aurantiaca ATCC 27029
NoYes	Actinoplanes missouriensis 431
NoYes	Gordonia bronchialis DSM 43247
NoYes	Rhodococcus equi 103S
NoYes	Rhodococcus opacus B4
NoYes	Nocardia cyriacigeorgica GUH-2
NoYes	Nocardia farcinica IFM 10152
NoYes	Amycolicicoccus subflavus DQS3-9A1
NoYes	Mycobacterium sp. JLS
NoYes	Mycobacterium intracellulare ATCC 13950
NoYes	Mycobacterium avium 104
NoYes	Mycobacterium vanbaalenii PYR-1
NoYes	Mycobacterium canettii CIPT 140010059
NoYes	Mycobacterium africanum GM041182
NoYes	Mycobacterium tuberculosis KZN 1435
NoYes	Mycobacterium tuberculosis
NoYes	Mycobacterium bovis BCG str. Pasteur 1173P2
NoYes	Mycobacterium rhodesiae NBB3
NoYes	Mycobacterium gilvum PYR-GCK
NoYes	Mycobacterium chubuense NBB4
NoYes	Mycobacterium smegmatis str. MC2 155
NoYes	Corynebacterium efficiens YS-314
NoYes	Corynebacterium urealyticum DSM 7109
NoYes	Corynebacterium glutamicum R
NoYes	Corynebacterium diphtheriae NCTC 13129
NoYes	Beutenbergia cavernae DSM 12333
NoYes	Jonesia denitrificans DSM 20603
NoYes	Intrasporangium calvum DSM 43043
NoYes	Brachybacterium faecium DSM 4810
NoYes	Xylanimonas cellulosilytica DSM 15894
NoYes	Cellulomonas flavigena DSM 20109
NoYes	Cellulomonas fimi ATCC 484
NoYes	[Cellvibrio] gilvus ATCC 13127
NoYes	Arthrobacter phenanthrenivorans Sphe3
NoYes	Arthrobacter arilaitensis Re117
NoYes	Rothia mucilaginosa DY-18
NoYes	Rothia dentocariosa ATCC 17931
NoYes	Arthrobacter sp. FB24
NoYes	Arcanobacterium haemolyticum DSM 20595
NoYes	Mobiluncus curtisii ATCC 43063
NoYes	Actinomyces sp. F0330
NoYes	Caldilinea aerophila DSM 14535 = NBRC 104270
NoYes	Roseiflexus sp. RS-1
NoYes	Roseiflexus castenholzii DSM 13941
NoYes	Chloroflexus sp. MS-G
NoYes	Chloroflexus sp. Y-400-fl
NoYes	Chloroflexus aggregans DSM 9485
NoYes	Chloroflexus aurantiacus J-10-fl
NoYes	Oceanithermus profundus DSM 14977
NoYes	Marinithermus hydrothermalis DSM 14884
NoYes	Meiothermus silvanus DSM 9946
NoYes	Thermus sp. CCB_US3_UF1
NoYes	Thermus scotoductus SA-01
NoYes	Thermus thermophilus HB27
NoYes	Veillonella parvula DSM 2008
NoYes	Selenomonas sputigena ATCC 35185
NoYes	Selenomonas ruminantium subsp. lactilytica TAM6421
NoYes	Natranaerobius thermophilus JW/NM-WN-LF
NoYes	Symbiobacterium thermophilum IAM 14863
NoYes	Sulfobacillus acidophilus DSM 10332
NoYes	Desulfosporosinus orientis DSM 765
NoYes	Dehalobacter sp. DCA
NoYes	Desulfitobacterium hafniense Y51
NoYes	Desulfitobacterium dehalogenans ATCC 51507
NoYes	Alkaliphilus oremlandii OhILAs
NoYes	Alkaliphilus metalliredigens QYMF
NoYes	Clostridium ljungdahlii DSM 13528
NoYes	Thermodesulfobium narugense DSM 14796
NoYes	Carboxydothermus hydrogenoformans Z-2901
NoYes	Moorella thermoacetica ATCC 39073
NoYes	Ammonifex degensii KC4
NoYes	Lactobacillus fermentum IFO 3956
NoYes	Lactobacillus plantarum JDM1
NoYes	Kyrpidia tusciae DSM 2912
NoYes	Paenibacillus terrae HPL-003
NoYes	Paenibacillus polymyxa M1
NoYes	Bacillus selenitireducens MLS10
NoYes	Geobacillus thermoglucosidasius C56-YS93
NoYes	Geobacillus thermoleovorans CCB_US3_UF5
NoYes	Geobacillus kaustophilus HTA426
NoYes	Geobacillus sp. GHH01
NoYes	Geobacillus sp. WCH70
NoYes	Geobacillus thermodenitrificans NG80-2
NoYes	Bacillus sp. JS
NoYes	Bacillus sp. 1NLA3E
NoYes	Bacillus amyloliquefaciens FZB42
NoYes	Bacillus atrophaeus 1942
NoYes	Bacillus subtilis subsp. subtilis str. 168
NoYes	Bacillus licheniformis DSM 13 = ATCC 14580
NoYes	Bacillus weihenstephanensis KBAB4
NoYes	Bacillus thuringiensis str. Al Hakam
NoYes	Bacillus cereus 03BB102
NoYes	Bacillus anthracis str. A0248
NoYes	Bacillus clausii KSM-K16
NoYes	Macrococcus caseolyticus JCSC5402
NoYes	Staphylococcus pseudintermedius HKU10-03
NoYes	Staphylococcus lugdunensis HKU09-01
NoYes	Staphylococcus haemolyticus JCSC1435
NoYes	Staphylococcus epidermidis RP62A
NoYes	Staphylococcus carnosus subsp. carnosus TM300
NoYes	Staphylococcus aureus subsp. aureus JH1
NoYes	Staphylococcus aureus
NoYes	Pelodictyon phaeoclathratiforme BU-1
NoYes	Chlorobium luteolum DSM 273
NoYes	Chlorobium chlorochromatii CaD3
NoYes	Chlorobium phaeovibrioides DSM 265
NoYes	Chlorobaculum parvum NCIB 8327
NoYes	Chlorobium tepidum TLS
NoYes	Chloroherpeton thalassium ATCC 35110
NoYes	Treponema primitia ZAS-2
NoYes	Geobacillus sp. JF8
NoYes	Thermodesulfatator indicus DSM 15286
NoYes	Desulfurispirillum indicum S5
NoYes	Calditerrivibrio nitroreducens DSM 19672
NoYes	Denitrovibrio acetiphilus DSM 12809
NoYes	Deferribacter desulfuricans SSM1
NoYes	Flexistipes sinusarabici DSM 4947
NoYes	Sulfurihydrogenibium sp. YO3AOP1
NoYes	Sulfurihydrogenibium azorense Az-Fu1
NoYes	Persephonella marina EX-H1
NoYes	Hydrogenobaculum sp. Y04AAS1
NoYes	Hydrogenobacter thermophilus TK-6
NoYes	Thermodesulfovibrio yellowstonii DSM 11347
NoYes	Candidatus Nitrospira defluvii
NoYes	Candidatus Methylomirabilis oxyfera
NoYes	Acidithiobacillus ferrivorans SS3
NoYes	Acidithiobacillus caldus SM-1
NoYes	Acidithiobacillus ferrooxidans ATCC 53993
NoYes	Nautilia profundicola AmH
NoYes	Sulfurospirillum deleyianum DSM 6946
NoYes	Sulfurospirillum barnesii SES-3
NoYes	Arcobacter nitrofigilis DSM 7299
NoYes	Arcobacter butzleri RM4018
NoYes	Campylobacter hominis ATCC BAA-381
NoYes	Campylobacter lari RM2100
NoYes	Campylobacter curvus 525.92
NoYes	Campylobacter concisus 13826
NoYes	Campylobacter jejuni subsp. doylei 269.97
NoYes	Campylobacter sp. 03-427
NoYes	Campylobacter fetus subsp. fetus 82-40
NoYes	uncultured Sulfuricurvum sp. RIFRC-1
NoYes	Sulfuricurvum kujiense DSM 16994
NoYes	Sulfurimonas autotrophica DSM 16294
NoYes	Sulfurimonas denitrificans DSM 1251
NoYes	Wolinella succinogenes DSM 1740
NoYes	Helicobacter cetorum MIT 00-7128
NoYes	Helicobacter bizzozeronii CIII-1
NoYes	Helicobacter hepaticus ATCC 51449
NoYes	Helicobacter felis ATCC 49179
NoYes	Helicobacter cinaedi PAGU611
NoYes	Nitratiruptor sp. SB155-2
NoYes	Sulfurovum sp. NBC37-1
NoYes	Desulfomonile tiedjei DSM 6799
NoYes	Desulfurivibrio alkaliphilus AHT2
NoYes	Desulfotalea psychrophila LSv54
NoYes	Desulfobulbus propionicus DSM 2032
NoYes	Desulfobacterium autotrophicum HRM2
NoYes	Desulfococcus oleovorans Hxd3
NoYes	Desulfohalobium retbaense DSM 5692
NoYes	Desulfomicrobium baculatum DSM 4028
NoYes	Desulfovibrio piezophilus
NoYes	Desulfovibrio aespoeensis Aspo-2
NoYes	Desulfovibrio alaskensis G20
NoYes	Desulfovibrio salexigens DSM 2638
NoYes	Desulfovibrio africanus str. Walvis Bay
NoYes	Hippea maritima DSM 10411
NoYes	Geobacter uraniireducens Rf4
NoYes	Geobacter lovleyi SZ
NoYes	Geobacter metallireducens GS-15
NoYes	Anaeromyxobacter sp. Fw109-5
NoYes	Anaeromyxobacter dehalogenans 2CP-1
NoYes	Dechloromonas aromatica RCB
NoYes	Thauera sp. MZ1T
NoYes	Azoarcus sp. KH32C
NoYes	Pandoraea sp. RB-44
NoYes	Azoarcus sp. BH72
NoYes	Aromatoleum aromaticum EbN1
NoYes	Dechlorosoma suillum PS
NoYes	Pseudogulbenkiania sp. NH8B
NoYes	Laribacter hongkongensis HLHK9
NoYes	Chromobacterium violaceum ATCC 12472
NoYes	beta proteobacterium CB
NoYes	Methylibium petroleiphilum PM1
NoYes	Thiomonas arsenitoxydans
NoYes	Thiomonas intermedia K12
NoYes	Rubrivivax gelatinosus IL144
NoYes	Leptothrix cholodnii SP-6
NoYes	Burkholderia phymatum STM815
NoYes	Ralstonia eutropha JMP134
NoYes	Cupriavidus taiwanensis LMG 19424
NoYes	Cupriavidus metallidurans CH34
NoYes	Cupriavidus necator N-1
NoYes	Ralstonia eutropha H16
NoYes	Ralstonia pickettii 12D
NoYes	Ralstonia solanacearum CFBP2957
NoYes	Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1
NoYes	Burkholderia thailandensis E264
NoYes	Burkholderia pseudomallei 1106a
NoYes	Burkholderia mallei SAVP1
NoYes	Burkholderia ambifaria AMMD
NoYes	Burkholderia multivorans ATCC 17616
NoYes	Burkholderia vietnamiensis G4
NoYes	Burkholderia gladioli BSR3
NoYes	Burkholderia glumae BGR1
NoYes	Alicycliphilus denitrificans K601
NoYes	Ramlibacter tataouinensis TTB310
NoYes	Delftia sp. Cs1-4
NoYes	Delftia acidovorans SPH-1
NoYes	Polaromonas sp. JS666
NoYes	Polaromonas naphthalenivorans CJ2
NoYes	Variovorax paradoxus S110
NoYes	Rhodoferax ferrireducens T118
NoYes	Acidovorax ebreus TPSY
NoYes	Acidovorax sp. KKS102
NoYes	Acidovorax sp. JS42
NoYes	Acidovorax citrulli AAC00-1
NoYes	Acidovorax avenae subsp. avenae ATCC 19860
NoYes	Herminiimonas arsenicoxydans
NoYes	Janthinobacterium sp. Marseille
NoYes	Herbaspirillum seropedicae SmR1
NoYes	Advenella kashmirensis WT001
NoYes	Bordetella petrii DSM 12804
NoYes	Bordetella pertussis Tohama I
NoYes	Bordetella parapertussis 12822
NoYes	Bordetella bronchiseptica RB50
NoYes	Achromobacter xylosoxidans A8
NoYes	Achromobacter xylosoxidans
NoYes	Thiobacillus denitrificans ATCC 25259
NoYes	Caulobacter sp. K31
NoYes	Phenylobacterium zucineum HLK1
NoYes	Maricaulis maris MCS10
NoYes	Hyphomonas neptunium ATCC 15444
NoYes	Dinoroseobacter shibae DFL 12
NoYes	Phaeobacter gallaeciensis 2.10
NoYes	Pseudovibrio sp. FO-BEG1
NoYes	Ruegeria sp. TM1040
NoYes	Ruegeria pomeroyi DSS-3
NoYes	Roseobacter litoralis Och 149
NoYes	Roseobacter denitrificans OCh 114
NoYes	Rhodobacter sphaeroides ATCC 17029
NoYes	Rhodobacter capsulatus SB 1003
NoYes	Paracoccus denitrificans PD1222
NoYes	Tistrella mobilis KA081020-065
NoYes	Magnetospirillum magneticum AMB-1
NoYes	Rhodospirillum rubrum F11
NoYes	Azospirillum lipoferum 4B
NoYes	Azospirillum sp. B510
NoYes	Azospirillum brasilense Sp245
NoYes	Acidiphilium multivorum AIU301
NoYes	Acidiphilium cryptum JF-5
NoYes	Azorhizobium caulinodans ORS 571
NoYes	Methylobacterium chloromethanicum CM4
NoYes	Methylobacterium extorquens AM1
NoYes	Methylobacterium sp. 4-46
NoYes	Methylobacterium populi BJ001
NoYes	Methylobacterium nodulans ORS 2060
NoYes	Methylobacterium radiotolerans JCM 2831
NoYes	Ochrobactrum anthropi ATCC 49188
NoYes	Brucella microti CCM 4915
NoYes	Brucella pinnipedialis B2/94
NoYes	Brucella canis ATCC 23365
NoYes	Brucella suis ATCC 23445
NoYes	Brucella melitensis ATCC 23457
NoYes	Brucella ovis ATCC 25840
NoYes	Brucella abortus S19
NoYes	Sinorhizobium medicae WSM419
NoYes	Mesorhizobium sp. BNC1
NoYes	Methylocella silvestris BL2
NoYes	Hyphomicrobium sp. MC1
NoYes	Hyphomicrobium denitrificans ATCC 51888
NoYes	Nitrobacter winogradskyi Nb-255
NoYes	Nitrobacter hamburgensis X14
NoYes	Bradyrhizobium japonicum USDA 110
NoYes	Aggregatibacter aphrophilus NJ8700
NoYes	Aggregatibacter actinomycetemcomitans D7S-1
NoYes	Haemophilus somnus 129PT
NoYes	Gallibacterium anatis UMN179
NoYes	Pasteurella multocida subsp. multocida str. 3480
NoYes	Haemophilus parasuis SH0165
NoYes	Haemophilus ducreyi 35000HP
NoYes	Haemophilus parainfluenzae T3T1
NoYes	Haemophilus influenzae PittEE
NoYes	Actinobacillus succinogenes 130Z
NoYes	Actinobacillus pleuropneumoniae serovar 5b str. L20
NoYes	Oceanimonas sp. GK1
NoYes	Aeromonas veronii B565
NoYes	Aeromonas salmonicida subsp. salmonicida A449
NoYes	Aeromonas hydrophila subsp. hydrophila ATCC 7966
NoYes	Aliivibrio salmonicida LFI1238
NoYes	Vibrio fischeri MJ11
NoYes	Vibrio sp. Ex25
NoYes	Vibrio harveyi ATCC BAA-1116
NoYes	Vibrio parahaemolyticus RIMD 2210633
NoYes	Vibrio splendidus LGP32
NoYes	Vibrio anguillarum 775
NoYes	Vibrio furnissii NCTC 11218
NoYes	Vibrio vulnificus MO6-24/O
NoYes	Vibrio cholerae O395
NoYes	Photobacterium profundum SS9
NoYes	Psychromonas sp. CNPT3
NoYes	Ferrimonas balearica DSM 9799
NoYes	Shewanella piezotolerans WP3
NoYes	Shewanella loihica PV-4
NoYes	Shewanella halifaxensis HAW-EB4
NoYes	Shewanella sediminis HAW-EB3
NoYes	Shewanella pealeana ATCC 700345
NoYes	Shewanella oneidensis MR-1
NoYes	Shewanella baltica OS185
NoYes	Shewanella woodyi ATCC 51908
NoYes	Shewanella sp. MR-4
NoYes	Shewanella amazonensis SB2B
NoYes	Shewanella violacea DSS12
NoYes	Shewanella frigidimarina NCIMB 400
NoYes	Shewanella putrefaciens CN-32
NoYes	Colwellia psychrerythraea 34H
NoYes	Marinobacter adhaerens HP15
NoYes	Marinobacter sp. BSs20148
NoYes	Marinobacter hydrocarbonoclasticus ATCC 49840
NoYes	Marinobacter aquaeolei VT8
NoYes	Alteromonas macleodii str. 'Deep ecotype'
NoYes	Kangiella koreensis DSM 16069
NoYes	Hahella chejuensis KCTC 2396
NoYes	Alcanivorax borkumensis SK2
NoYes	Chromohalobacter salexigens DSM 3043
NoYes	Halomonas elongata DSM 2581
NoYes	Rhodanobacter denitrificans
NoYes	Stenotrophomonas maltophilia K279a
NoYes	Alkalilimnicola ehrlichii MLHE-1
NoYes	Halorhodospira halophila SL1
NoYes	Allochromatium vinosum DSM 180
NoYes	Nitrosococcus halophilus Nc4
NoYes	gamma proteobacterium HdN1
NoYes	Candidatus Vesicomyosocius okutanii HA
NoYes	Photorhabdus asymbiotica
NoYes	Photorhabdus luminescens subsp. laumondii TTO1
NoYes	Xenorhabdus bovienii SS-2004
NoYes	Xenorhabdus nematophila ATCC 19061
NoYes	Providencia stuartii MRSN 2154
NoYes	Proteus mirabilis HI4320
NoYes	Edwardsiella ictaluri 93-146
NoYes	Edwardsiella tarda EIB202
NoYes	Rahnella sp. Y9602
NoYes	Rahnella aquatilis CIP 78.65 = ATCC 33071
NoYes	Yersinia pseudotuberculosis IP 31758
NoYes	Yersinia pestis Pestoides F
NoYes	Yersinia enterocolitica subsp. enterocolitica 8081
NoYes	Serratia sp. AS12
NoYes	Serratia sp. ATCC 39006
NoYes	Serratia plymuthica AS9
NoYes	Serratia proteamaculans 568
NoYes	Dickeya dadantii Ech703
NoYes	Dickeya zeae Ech1591
NoYes	Pectobacterium wasabiae WPP163
NoYes	Pectobacterium sp. SCC3193
NoYes	Pectobacterium atrosepticum SCRI1043
NoYes	Pectobacterium carotovorum subsp. carotovorum PC1
NoYes	Pantoea sp. At-9b
NoYes	Pantoea vagans C9-1
NoYes	Pantoea ananatis LMG 20103
NoYes	Erwinia tasmaniensis Et1/99
NoYes	Erwinia sp. Ejp617
NoYes	Erwinia billingiae Eb661
NoYes	Erwinia pyrifoliae Ep1/96
NoYes	Erwinia amylovora ATCC 49946
NoYes	Escherichia blattae DSM 4481
NoYes	Cronobacter turicensis z3032
NoYes	Cronobacter sakazakii ES15
NoYes	Enterobacteriaceae bacterium strain FGI 57
NoYes	Shigella sonnei Ss046
NoYes	Shigella flexneri 5 str. 8401
NoYes	Shigella dysenteriae Sd197
NoYes	Shigella boydii CDC 3083-94
NoYes	Salmonella bongori NCTC 12419
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
NoYes	Klebsiella oxytoca E718
NoYes	Klebsiella variicola At-22
NoYes	Klebsiella pneumoniae NTUH-K2044
NoYes	Enterobacter aerogenes KCTC 2190
NoYes	Escherichia fergusonii ATCC 35469
NoYes	Escherichia coli 'BL21-Gold(DE3)pLysS AG'
NoYes	Enterobacter sp. R4-368
NoYes	Enterobacter sp. 638
NoYes	Enterobacter asburiae LF7a
NoYes	Enterobacter cloacae subsp. dissolvens SDM
NoYes	Citrobacter rodentium ICC168
NoYes	Citrobacter koseri ATCC BAA-895
NoYes	Pseudomonas sp. TKP
NoYes	Pseudomonas brassicacearum subsp. brassicacearum NFM421
NoYes	Pseudomonas stutzeri A1501
NoYes	Pseudomonas aeruginosa UCBPP-PA14
NoYes	Psychrobacter sp. PRwf-1
NoYes	Psychrobacter arcticus 273-4
NoYes	Moraxella catarrhalis RH4
NoYes	Methylophaga sp. JAM1
NoYes	Candidatus Caldiarchaeum subterraneum
NoYes	Aeropyrum pernix K1
NoYes	Metallosphaera cuprina Ar-4
NoYes	Metallosphaera sedula DSM 5348
NoYes	Acidianus hospitalis W1
NoYes	Sulfolobus tokodaii str. 7
NoYes	Sulfolobus islandicus Y.N.15.51
NoYes	Sulfolobus solfataricus P2
NoYes	Sulfolobus acidocaldarius DSM 639
NoYes	Thermofilum sp. 1910b
NoYes	Vulcanisaeta moutnovskia 768-28
NoYes	Vulcanisaeta distributa DSM 14429
NoYes	Pyrobaculum sp. 1860
NoYes	Pyrobaculum calidifontis JCM 11548
NoYes	Pyrobaculum arsenaticum DSM 13514
NoYes	Pyrobaculum oguniense TE7
NoYes	Thermoproteus neutrophilus V24Sta
NoYes	Pyrobaculum aerophilum str. IM2
NoYes	Pyrobaculum islandicum DSM 4184
NoYes	Thermoproteus uzoniensis 768-20
NoYes	Thermoproteus tenax Kra 1
NoYes	halophilic archaeon DL31
NoYes	Ferroglobus placidus DSM 10642
NoYes	Archaeoglobus profundus DSM 5631
NoYes	Archaeoglobus veneficus SNP6
NoYes	Archaeoglobus fulgidus DSM 4304
NoYes	Halopiger xanaduensis SH-6
NoYes	Haloterrigena turkmenica DSM 5511
NoYes	Natrinema sp. J7-2
NoYes	Halorubrum lacusprofundi ATCC 49239
NoYes	Halogeometricum borinquense DSM 11551
NoYes	Haloferax mediterranei ATCC 33500
NoYes	Haloferax volcanii DS2
NoYes	Halomicrobium mukohataei DSM 12286
NoYes	Halorhabdus utahensis DSM 12940
NoYes	Natronomonas pharaonis DSM 2160
NoYes	Haloarcula hispanica ATCC 33960
NoYes	Haloarcula marismortui ATCC 43049
NoYes	Halalkalicoccus jeotgali B3
NoYes	Halobacterium salinarum R1
NoYes	Halobacterium sp. NRC-1
NoYes	Gordonibacter pamelaeae 7-10-1-b
NoYes	Adlercreutzia equolifaciens DSM 19450
NoYes	Nocardiopsis alba ATCC BAA-2165
NoYes	Streptomyces albus J1074
NoYes	Streptomyces davawensis JCM 4913
NoYes	Streptomyces cattleya NRRL 8057 = DSM 46488
NoYes	Streptomyces hygroscopicus subsp. jinggangensis TL01
NoYes	Propionibacterium acnes ATCC 11828
NoYes	Propionibacterium acnes TypeIA2 P.acn31
NoYes	Propionibacterium acnes TypeIA2 P.acn17
NoYes	Propionibacterium acnes TypeIA2 P.acn33
NoYes	Propionibacterium acnes C1
NoYes	Propionibacterium acnes HL096PA1
NoYes	Propionibacterium acnes 6609
NoYes	Propionibacterium acnes 266
NoYes	Propionibacterium acnes KPA171202
NoYes	Propionibacterium acidipropionici ATCC 4875
NoYes	Rhodococcus pyridinivorans SB3094
NoYes	Nocardia brasiliensis ATCC 700358
NoYes	Mycobacterium sp. MOTT36Y
NoYes	Mycobacterium sp. JDM601
NoYes	Mycobacterium sp. KMS
NoYes	Mycobacterium sp. MCS
NoYes	Mycobacterium yongonense 05-1390
NoYes	Mycobacterium intracellulare MOTT-64
NoYes	Mycobacterium indicus pranii MTCC 9506
NoYes	Mycobacterium intracellulare MOTT-02
NoYes	Mycobacterium avium subsp. paratuberculosis MAP4
NoYes	Mycobacterium avium subsp. paratuberculosis K-10
NoYes	Mycobacterium canettii CIPT 140070017
NoYes	Mycobacterium canettii CIPT 140060008
NoYes	Mycobacterium canettii CIPT 140070008
NoYes	Mycobacterium canettii CIPT 140070010
NoYes	Mycobacterium tuberculosis EAI5/NITR206
NoYes	Mycobacterium tuberculosis EAI5
NoYes	Mycobacterium tuberculosis CAS/NITR204
NoYes	Mycobacterium tuberculosis str. Beijing/NITR203
NoYes	Mycobacterium tuberculosis UT205
NoYes	Mycobacterium tuberculosis RGTB423
NoYes	Mycobacterium tuberculosis RGTB327
NoYes	Mycobacterium tuberculosis CTRI-2
NoYes	Mycobacterium tuberculosis str. Erdman = ATCC 35801
NoYes	Mycobacterium tuberculosis KZN 605
NoYes	Mycobacterium tuberculosis KZN 4207
NoYes	Mycobacterium tuberculosis CCDC5180
NoYes	Mycobacterium tuberculosis CCDC5079
NoYes	Mycobacterium tuberculosis CCDC5079
NoYes	Mycobacterium tuberculosis H37Ra
NoYes	Mycobacterium tuberculosis str. Haarlem/NITR202
NoYes	Mycobacterium tuberculosis str. Haarlem
NoYes	Mycobacterium tuberculosis F11
NoYes	Mycobacterium tuberculosis H37Rv
NoYes	Mycobacterium tuberculosis CDC1551
NoYes	Mycobacterium bovis AF2122/97
NoYes	Mycobacterium bovis BCG str. Korea 1168P
NoYes	Mycobacterium bovis BCG str. Mexico
NoYes	Mycobacterium bovis BCG str. Tokyo 172
NoYes	Mycobacterium gilvum Spyr1
NoYes	Mycobacterium smegmatis str. MC2 155
NoYes	Mycobacterium kansasii ATCC 12478
NoYes	Corynebacterium maris DSM 45190
NoYes	Corynebacterium halotolerans YIM 70093 = DSM 44683
NoYes	Corynebacterium urealyticum DSM 7111
NoYes	Corynebacterium pseudotuberculosis CIP 52.97
NoYes	Corynebacterium glutamicum MB001
NoYes	Corynebacterium glutamicum SCgG2
NoYes	Corynebacterium glutamicum SCgG1
NoYes	Corynebacterium glutamicum ATCC 13032
NoYes	Corynebacterium glutamicum ATCC 13032
NoYes	Corynebacterium glutamicum ATCC 13032
NoYes	Corynebacterium diphtheriae BH8
NoYes	Corynebacterium diphtheriae INCA 402
NoYes	Corynebacterium diphtheriae VA01
NoYes	Corynebacterium diphtheriae HC04
NoYes	Corynebacterium diphtheriae HC03
NoYes	Corynebacterium diphtheriae HC02
NoYes	Corynebacterium diphtheriae HC01
NoYes	Corynebacterium diphtheriae 241
NoYes	Corynebacterium diphtheriae CDCE 8392
NoYes	Corynebacterium diphtheriae PW8
NoYes	Corynebacterium diphtheriae C7 (beta)
NoYes	Corynebacterium diphtheriae 31A
NoYes	Actinomyces odontolyticus ATCC 17982
NoYes	Actinomyces viscosus C505
NoYes	Thermus oshimai JL-2
NoYes	Thermus thermophilus JL-18
NoYes	Thermus thermophilus SG0.5JP17-16
NoYes	Sulfobacillus acidophilus TPY
NoYes	Desulfosporosinus meridiei DSM 13257
NoYes	Desulfitobacterium dichloroeliminans LMG P-21439
NoYes	Desulfitobacterium hafniense DCB-2
NoYes	Clostridium sp. SY8519
NoYes	Clostridium saccharobutylicum DSM 13864
NoYes	Clostridium autoethanogenum DSM 10061
NoYes	Clostridium saccharoperbutylacetonicum N1-4(HMT)
NoYes	Clostridium pasteurianum BC1
NoYes	Lactobacillus fermentum F-6
NoYes	Lactobacillus reuteri TD1
NoYes	Lactobacillus reuteri I5007
NoYes	Lactobacillus reuteri JCM 1112
NoYes	Lactobacillus reuteri SD2112
NoYes	Lactobacillus plantarum WCFS1
NoYes	Paenibacillus sp. Y412MC10
NoYes	Paenibacillus larvae subsp. larvae DSM 25430
NoYes	Paenibacillus polymyxa CR1
NoYes	Paenibacillus polymyxa SC2
NoYes	Paenibacillus polymyxa E681
NoYes	Geobacillus sp. C56-T3
NoYes	Geobacillus sp. Y4.1MC1
NoYes	Geobacillus sp. Y412MC52
NoYes	Geobacillus sp. Y412MC61
NoYes	Bacillus amyloliquefaciens subsp. plantarum sequencing
NoYes	Bacillus amyloliquefaciens subsp. plantarum UCMB5033
NoYes	Bacillus amyloliquefaciens subsp. plantarum AS43.3
NoYes	Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2
NoYes	Bacillus amyloliquefaciens subsp. plantarum UCMB5113
NoYes	Bacillus amyloliquefaciens subsp. plantarum UCMB5036
NoYes	Bacillus amyloliquefaciens subsp. plantarum CAU B946
NoYes	Bacillus amyloliquefaciens LFB112
NoYes	Bacillus amyloliquefaciens CC178
NoYes	Bacillus amyloliquefaciens Y2
NoYes	Bacillus amyloliquefaciens IT-45
NoYes	Bacillus amyloliquefaciens XH7
NoYes	Bacillus amyloliquefaciens LL3
NoYes	Bacillus amyloliquefaciens TA208
NoYes	Bacillus amyloliquefaciens DSM 7
NoYes	Bacillus licheniformis 9945A
NoYes	Bacillus subtilis PY79
NoYes	Bacillus subtilis XF-1
NoYes	Bacillus subtilis QB928
NoYes	Bacillus subtilis BSn5
NoYes	Bacillus subtilis subsp. subtilis str. BAB-1
NoYes	Bacillus subtilis subsp. subtilis str. BSP1
NoYes	Bacillus subtilis subsp. subtilis str. RO-NN-1
NoYes	Bacillus subtilis subsp. subtilis 6051-HGW
NoYes	Bacillus subtilis subsp. spizizenii TU-B-10
NoYes	Bacillus subtilis subsp. spizizenii str. W23
NoYes	Bacillus subtilis subsp. natto BEST195
NoYes	Bacillus licheniformis DSM 13 = ATCC 14580
NoYes	Bacillus cereus subsp. cytotoxis NVH 391-98
NoYes	Bacillus toyonensis BCT-7112
NoYes	Bacillus thuringiensis HD-771
NoYes	Bacillus thuringiensis HD-789
NoYes	Bacillus thuringiensis MC28
NoYes	Bacillus thuringiensis serovar chinensis CT-43
NoYes	Bacillus thuringiensis YBT-1518
NoYes	Bacillus thuringiensis Bt407
NoYes	Bacillus thuringiensis serovar konkukian str. 97-27
NoYes	Bacillus thuringiensis serovar kurstaki str. HD73
NoYes	Bacillus thuringiensis BMB171
NoYes	Bacillus thuringiensis serovar finitimus YBT-020
NoYes	Bacillus thuringiensis serovar thuringiensis str. IS5056
NoYes	Bacillus cereus FRI-35
NoYes	Bacillus cereus biovar anthracis str. CI
NoYes	Bacillus cereus AH820
NoYes	Bacillus cereus AH187
NoYes	Bacillus cereus B4264
NoYes	Bacillus cereus G9842
NoYes	Bacillus cereus Q1
NoYes	Bacillus cereus F837/76
NoYes	Bacillus cereus NC7401
NoYes	Bacillus cereus E33L
NoYes	Bacillus cereus ATCC 14579
NoYes	Bacillus anthracis str. H9401
NoYes	Bacillus anthracis str. CDC 684
NoYes	Bacillus anthracis str. 'Ames Ancestor'
NoYes	Bacillus anthracis str. Sterne
NoYes	Bacillus anthracis str. Ames
NoYes	Bacillus coagulans 36D1
NoYes	Staphylococcus aureus subsp. aureus MSHR1132
NoYes	Staphylococcus pseudintermedius ED99
NoYes	Staphylococcus pasteuri SP1
NoYes	Staphylococcus lugdunensis N920143
NoYes	Staphylococcus warneri SG1
NoYes	Staphylococcus epidermidis ATCC 12228
NoYes	Staphylococcus aureus CA-347
NoYes	Staphylococcus aureus Bmb9393
NoYes	Staphylococcus aureus M1
NoYes	Staphylococcus aureus 08BA02176
NoYes	Staphylococcus aureus ST228/18412
NoYes	Staphylococcus aureus ST228/18341
NoYes	Staphylococcus aureus ST228/16125
NoYes	Staphylococcus aureus ST228/16035
NoYes	Staphylococcus aureus ST228/15532
NoYes	Staphylococcus aureus ST228/10497
NoYes	Staphylococcus aureus ST228/10388
NoYes	Staphylococcus aureus 04-02981
NoYes	Staphylococcus aureus RF122
NoYes	Staphylococcus aureus subsp. aureus Z172
NoYes	Staphylococcus aureus subsp. aureus 6850
NoYes	Staphylococcus aureus subsp. aureus SA957
NoYes	Staphylococcus aureus subsp. aureus CN1
NoYes	Staphylococcus aureus subsp. aureus SA40
NoYes	Staphylococcus aureus subsp. aureus 11819-97
NoYes	Staphylococcus aureus subsp. aureus M013
NoYes	Staphylococcus aureus subsp. aureus HO 5096 0412
NoYes	Staphylococcus aureus subsp. aureus VC40
NoYes	Staphylococcus aureus subsp. aureus T0131
NoYes	Staphylococcus aureus subsp. aureus LGA251
NoYes	Staphylococcus aureus subsp. aureus ECT-R 2
NoYes	Staphylococcus aureus subsp. aureus JKD6159
NoYes	Staphylococcus aureus subsp. aureus ED133
NoYes	Staphylococcus aureus subsp. aureus ED98
NoYes	Staphylococcus aureus subsp. aureus TW20
NoYes	Staphylococcus aureus subsp. aureus 55/2053
NoYes	Staphylococcus aureus subsp. aureus TCH60
NoYes	Staphylococcus aureus subsp. aureus str. JKD6008
NoYes	Staphylococcus aureus subsp. aureus 71193
NoYes	Staphylococcus aureus subsp. aureus S0385
NoYes	Staphylococcus aureus subsp. aureus str. Newman
NoYes	Staphylococcus aureus subsp. aureus Mu3
NoYes	Staphylococcus aureus subsp. aureus USA300_TCH1516
NoYes	Staphylococcus aureus subsp. aureus USA300_FPR3757
NoYes	Staphylococcus aureus subsp. aureus JH9
NoYes	Staphylococcus aureus subsp. aureus MSSA476
NoYes	Staphylococcus aureus subsp. aureus MRSA252
NoYes	Staphylococcus aureus subsp. aureus MW2
NoYes	Staphylococcus aureus subsp. aureus N315
NoYes	Staphylococcus aureus subsp. aureus Mu50
NoYes	Staphylococcus aureus subsp. aureus COL
NoYes	Staphylococcus aureus subsp. aureus NCTC 8325
NoYes	Chlorobium phaeobacteroides BS1
NoYes	Helicobacter cinaedi ATCC BAA-847
NoYes	Hydrogenobacter thermophilus TK-6
NoYes	Acidithiobacillus ferrooxidans ATCC 23270
NoYes	Arcobacter butzleri 7h1h
NoYes	Arcobacter butzleri ED-1
NoYes	Campylobacter jejuni Waterborne C.jejuni Outbreak
NoYes	Campylobacter jejuni RM1221
NoYes	Campylobacter jejuni subsp. jejuni 00-2544
NoYes	Campylobacter jejuni subsp. jejuni 00-2538
NoYes	Campylobacter jejuni subsp. jejuni 00-2426
NoYes	Campylobacter jejuni subsp. jejuni 00-2425
NoYes	Campylobacter jejuni subsp. jejuni PT14
NoYes	Campylobacter jejuni subsp. jejuni ICDCCJ07001
NoYes	Campylobacter jejuni subsp. jejuni S3
NoYes	Campylobacter jejuni subsp. jejuni M1
NoYes	Campylobacter jejuni subsp. jejuni IA3902
NoYes	Campylobacter jejuni subsp. jejuni 81116
NoYes	Campylobacter jejuni subsp. jejuni 81-176
NoYes	Campylobacter jejuni subsp. jejuni NCTC 11168-BN148
NoYes	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
NoYes	Campylobacter coli 76339
NoYes	Campylobacter coli 15-537360
NoYes	Campylobacter coli CVM N29710
NoYes	Helicobacter cetorum MIT 99-5656
NoYes	Desulfocapsa sulfexigens DSM 10523
NoYes	Desulfovibrio vulgaris str. 'Miyazaki F'
NoYes	Desulfovibrio desulfuricans ND132
NoYes	Geobacter sp. M18
NoYes	Anaeromyxobacter sp. K
NoYes	Anaeromyxobacter dehalogenans 2CP-C
NoYes	Pandoraea pnomenusa 3kgm
NoYes	Ralstonia pickettii 12J
NoYes	Ralstonia solanacearum FQY_4
NoYes	Ralstonia solanacearum Po82
NoYes	Ralstonia solanacearum PSI07
NoYes	Ralstonia solanacearum CMR15
NoYes	Ralstonia solanacearum GMI1000
NoYes	Burkholderia sp. YI23
NoYes	Burkholderia sp. CCGE1003
NoYes	Burkholderia sp. KJ006
NoYes	Burkholderia thailandensis MSMB121
NoYes	Burkholderia pseudomallei MSHR305
NoYes	Burkholderia pseudomallei NCTC 13179
NoYes	Burkholderia pseudomallei BPC006
NoYes	Burkholderia pseudomallei 1026b
NoYes	Burkholderia pseudomallei MSHR346
NoYes	Burkholderia pseudomallei 668
NoYes	Burkholderia pseudomallei 1710b
NoYes	Burkholderia pseudomallei K96243
NoYes	Burkholderia mallei NCTC 10229
NoYes	Burkholderia mallei NCTC 10247
NoYes	Burkholderia mallei ATCC 23344
NoYes	Burkholderia ambifaria MC40-6
NoYes	Burkholderia multivorans ATCC 17616
NoYes	Alicycliphilus denitrificans BC
NoYes	Variovorax paradoxus B4
NoYes	Variovorax paradoxus EPS
NoYes	Bordetella pertussis CS
NoYes	Bordetella parapertussis 18323
NoYes	Bordetella bronchiseptica MO149
NoYes	Bordetella bronchiseptica 253
NoYes	Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
NoYes	Sulfuricella denitrificans skB26
NoYes	Phaeobacter gallaeciensis DSM 17395
NoYes	Phaeobacter gallaeciensis DSM 26640
NoYes	Octadecabacter arcticus 238
NoYes	Rhodobacter sphaeroides KD131
NoYes	Rhodobacter sphaeroides 2.4.1
NoYes	Rhodospirillum rubrum ATCC 11170
NoYes	Micavibrio aeruginosavorus EPB
NoYes	Methylobacterium extorquens DM4
NoYes	Methylobacterium extorquens PA1
NoYes	Brucella ceti TE10759-12
NoYes	Brucella ceti TE28753-12
NoYes	Brucella canis HSK A52141
NoYes	Brucella suis VBI22
NoYes	Brucella suis 1330
NoYes	Brucella suis 1330
NoYes	Brucella melitensis NI
NoYes	Brucella melitensis M5-90
NoYes	Brucella melitensis M28
NoYes	Brucella melitensis bv. 1 str. 16M
NoYes	Brucella abortus A13334
NoYes	Brucella melitensis biovar Abortus 2308
NoYes	Brucella abortus bv. 1 str. 9-941
NoYes	Hyphomicrobium denitrificans 1NES1
NoYes	Oligotropha carboxidovorans OM5
NoYes	Oligotropha carboxidovorans OM5
NoYes	Rhodopseudomonas palustris BisB18
NoYes	Bradyrhizobium sp. S23321
NoYes	Bradyrhizobium japonicum USDA 6
NoYes	Simiduia agarivorans SA1 = DSM 21679
NoYes	Mannheimia succiniciproducens MBEL55E
NoYes	Bibersteinia trehalosi USDA-ARS-USMARC-192
NoYes	Aggregatibacter actinomycetemcomitans ANH9381
NoYes	Aggregatibacter actinomycetemcomitans D11S-1
NoYes	Haemophilus somnus 2336
NoYes	Mannheimia haemolytica USMARC_2286
NoYes	Mannheimia haemolytica M42548
NoYes	Mannheimia haemolytica D174
NoYes	Mannheimia haemolytica D171
NoYes	Mannheimia haemolytica D153
NoYes	Mannheimia haemolytica USDA-ARS-USMARC-183
NoYes	Mannheimia haemolytica USDA-ARS-USMARC-185
NoYes	Pasteurella multocida 36950
NoYes	Pasteurella multocida subsp. multocida str. HN06
NoYes	Pasteurella multocida subsp. multocida str. Pm70
NoYes	Haemophilus parasuis ZJ0906
NoYes	Haemophilus influenzae KR494
NoYes	Haemophilus influenzae F3047
NoYes	Haemophilus influenzae F3031
NoYes	Haemophilus influenzae 10810
NoYes	Haemophilus influenzae PittGG
NoYes	Haemophilus influenzae 86-028NP
NoYes	Haemophilus influenzae R2866
NoYes	Haemophilus influenzae R2846
NoYes	Haemophilus influenzae Rd KW20
NoYes	Actinobacillus suis H91-0380
NoYes	Actinobacillus pleuropneumoniae serovar 3 str. JL03
NoYes	Actinobacillus pleuropneumoniae serovar 7 str. AP76
NoYes	Aeromonas hydrophila ML09-119
NoYes	Vibrio fischeri ES114
NoYes	Vibrio sp. EJY3
NoYes	Vibrio parahaemolyticus BB22OP
NoYes	Vibrio alginolyticus NBRC 15630 = ATCC 17749
NoYes	Vibrio anguillarum Listonella anguillarum M3
NoYes	Vibrio nigripulchritudo VibrioScope
NoYes	Vibrio vulnificus CMCP6
NoYes	Vibrio vulnificus YJ016
NoYes	Vibrio cholerae LMA3984-4
NoYes	Vibrio cholerae M66-2
NoYes	Vibrio cholerae O395
NoYes	Vibrio cholerae IEC224
NoYes	Vibrio cholerae O1 str. 2010EL-1786
NoYes	Vibrio cholerae MJ-1236
NoYes	Vibrio cholerae O1 biovar El Tor str. N16961
NoYes	Shewanella sp. W3-18-1
NoYes	Shewanella sp. ANA-3
NoYes	Shewanella baltica BA175
NoYes	Shewanella baltica OS678
NoYes	Shewanella baltica OS117
NoYes	Shewanella baltica OS223
NoYes	Shewanella baltica OS195
NoYes	Shewanella baltica OS155
NoYes	Shewanella sp. MR-7
NoYes	Shewanella putrefaciens 200
NoYes	Alteromonas macleodii str. 'English Channel 615'
NoYes	Alcanivorax dieselolei B5
NoYes	Stenotrophomonas maltophilia JV3
NoYes	Stenotrophomonas maltophilia R551-3
NoYes	Thioalkalivibrio nitratireducens DSM 14787
NoYes	Thioflavicoccus mobilis 8321
NoYes	Proteus mirabilis BB2000
NoYes	Morganella morganii subsp. morganii KT
NoYes	Edwardsiella tarda C07-087
NoYes	Edwardsiella tarda FL6-60
NoYes	Rahnella aquatilis HX2
NoYes	Yersinia pseudotuberculosis PB1/+
NoYes	Yersinia pseudotuberculosis YPIII
NoYes	Yersinia pseudotuberculosis IP 32953
NoYes	Yersinia pestis biovar Microtus str. 91001
NoYes	Yersinia pestis A1122
NoYes	Yersinia pestis Z176003
NoYes	Yersinia pestis D182038
NoYes	Yersinia pestis D106004
NoYes	Yersinia pestis biovar Medievalis str. Harbin 35
NoYes	Yersinia pestis Nepal516
NoYes	Yersinia pestis Antiqua
NoYes	Yersinia pestis Angola
NoYes	Yersinia pestis CO92
NoYes	Yersinia pestis KIM10+
NoYes	Yersinia enterocolitica subsp. palearctica 105.5R(r)
NoYes	Yersinia enterocolitica subsp. palearctica Y11
NoYes	Serratia sp. AS13
NoYes	Serratia plymuthica S13
NoYes	Serratia plymuthica 4Rx13
NoYes	Serratia marcescens FGI94
NoYes	Serratia marcescens WW4
NoYes	Serratia liquefaciens ATCC 27592
NoYes	Dickeya dadantii Ech586
NoYes	Dickeya dadantii 3937
NoYes	Pectobacterium carotovorum subsp. carotovorum PCC21
NoYes	Pantoea ananatis LMG 5342
NoYes	Pantoea ananatis PA13
NoYes	Pantoea ananatis AJ13355
NoYes	Erwinia pyrifoliae DSM 12163
NoYes	Erwinia amylovora CFBP1430
NoYes	Cronobacter sakazakii CMCC 45402
NoYes	Cronobacter sakazakii SP291
NoYes	Cronobacter sakazakii ATCC BAA-894
NoYes	Raoultella ornithinolytica B6
NoYes	Shigella sonnei 53G
NoYes	Shigella flexneri 2002017
NoYes	Shigella flexneri 2a str. 2457T
NoYes	Shigella flexneri 2a str. 301
NoYes	Shigella dysenteriae 1617
NoYes	Shigella boydii Sb227
NoYes	Salmonella bongori N268-08
NoYes	Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980
NoYes	Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. 08-1736
NoYes	Salmonella enterica subsp. enterica serovar Javiana str. CFSAN001992
NoYes	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633
NoYes	Salmonella enterica subsp. enterica Serovar Cubana str. CFSAN002050
NoYes	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
NoYes	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
NoYes	Salmonella enterica subsp. enterica serovar Newport str. USMARC-S3124.1
NoYes	Salmonella enterica subsp. enterica serovar Newport str. SL254
NoYes	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- str. CFSAN001921
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. U288
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 798
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. T000240
NoYes	Salmonella enterica The genome of subsp. enterica serovar Typhimurium str. DT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. D23580
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
NoYes	Salmonella enterica subsp. enterica serovar Typhimurium Definitive Type 104
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty21a
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. CT18
NoYes	Salmonella enterica subsp. enterica serovar Typhi str. Ty2
NoYes	Salmonella enterica serovar Bovismorbificans genomics
NoYes	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189
NoYes	Salmonella enterica subsp. enterica serovar Agona str. 24249
NoYes	Salmonella enterica subsp. enterica serovar Agona str. SL483
NoYes	Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
NoYes	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
NoYes	Salmonella enterica subsp. enterica Serovar Heidelberg str. CFSAN002069
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. B182
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. 41578
NoYes	Salmonella enterica subsp. enterica serovar Heidelberg str. SL476
NoYes	Salmonella enterica subsp. enterica serovar Pullorum str. S06004
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. CDC1983-67
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078
NoYes	Salmonella enterica subsp. enterica serovar Thompson str. RM6836
NoYes	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91
NoYes	Klebsiella oxytoca KCTC 1686
NoYes	Klebsiella pneumoniae JM45
NoYes	Klebsiella pneumoniae CG43
NoYes	Klebsiella pneumoniae KCTC 2242
NoYes	Klebsiella pneumoniae 342
NoYes	Klebsiella pneumoniae subsp. pneumoniae 1084
NoYes	Klebsiella pneumoniae subsp. pneumoniae HS11286
NoYes	Klebsiella pneumoniae subsp. pneumoniae MGH 78578
NoYes	Klebsiella pneumoniae subsp. rhinoscleromatis SB3432
NoYes	Enterobacter aerogenes EA1509E
NoYes	Escherichia coli E24377A
NoYes	Escherichia coli E. coli PMV-1
NoYes	Escherichia coli JJ1886
NoYes	Escherichia coli LY180
NoYes	Escherichia coli APEC O78
NoYes	Escherichia coli O7:K1 str. CE10
NoYes	Escherichia coli O104:H4 str. 2009EL-2050
NoYes	Escherichia coli O104:H4 str. 2009EL-2071
NoYes	Escherichia coli O104:H4 str. 2011C-3493
NoYes	Escherichia coli NA114
NoYes	Escherichia coli P12b
NoYes	Escherichia coli str. 'clone D i2'
NoYes	Escherichia coli str. 'clone D i14'
NoYes	Escherichia coli UM146
NoYes	Escherichia coli 042
NoYes	Escherichia coli Xuzhou21
NoYes	Escherichia coli IHE3034
NoYes	Escherichia coli UMNK88
NoYes	Escherichia coli O83:H1 str. NRG 857C
NoYes	Escherichia coli ABU 83972
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli KO11FL
NoYes	Escherichia coli LF82
NoYes	Escherichia coli ED1a
NoYes	Escherichia coli IAI39
NoYes	Escherichia coli UMN026
NoYes	Escherichia coli 55989
NoYes	Escherichia coli S88
NoYes	Escherichia coli IAI1
NoYes	Escherichia coli W
NoYes	Escherichia coli W
NoYes	Escherichia coli DH1
NoYes	Escherichia coli DH1
NoYes	Escherichia coli ATCC 8739
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli BL21(DE3)
NoYes	Escherichia coli SMS-3-5
NoYes	Escherichia coli SE15
NoYes	Escherichia coli SE11
NoYes	Escherichia coli APEC O1
NoYes	Escherichia coli O103:H2 str. 12009
NoYes	Escherichia coli UTI89
NoYes	Escherichia coli 536
NoYes	Escherichia coli HS
NoYes	Escherichia coli ETEC H10407
NoYes	Escherichia coli O55:H7 str. RM12579
NoYes	Escherichia coli O55:H7 str. CB9615
NoYes	Escherichia coli O26:H11 str. 11368
NoYes	Escherichia coli CFT073
NoYes	Escherichia coli O111:H- str. 11128
NoYes	Escherichia coli O127:H6 str. E2348/69
NoYes	Escherichia coli O157:H7 str. TW14359
NoYes	Escherichia coli O157:H7 str. EC4115
NoYes	Escherichia coli O157:H7 str. Sakai
NoYes	Escherichia coli O157:H7 str. EDL933
NoYes	Escherichia coli str. K-12 substr. MDS42
NoYes	Escherichia coli BW2952
NoYes	Escherichia coli str. K-12 substr. MG1655
NoYes	Escherichia coli str. K-12 substr. W3110
NoYes	Escherichia coli str. K-12 substr. DH10B
NoYes	Escherichia coli B str. REL606
NoYes	Enterobacter cloacae SCF1
NoYes	Enterobacter cloacae EcWSU1
NoYes	Enterobacter cloacae subsp. cloacae ENHKU01
NoYes	Enterobacter cloacae subsp. cloacae NCTC 9394
NoYes	Enterobacter cloacae subsp. cloacae ATCC 13047
NoYes	Pseudomonas denitrificans ATCC 13867
NoYes	Pseudomonas stutzeri CCUG 29243
NoYes	Pseudomonas stutzeri DSM 10701
NoYes	Pseudomonas stutzeri DSM 4166
NoYes	Pseudomonas stutzeri RCH2
NoYes	Pseudomonas stutzeri ATCC 17588 = LMG 11199
NoYes	Pseudomonas fluorescens F113
NoYes	Pseudomonas aeruginosa SCV20265
NoYes	Pseudomonas aeruginosa MTB-1
NoYes	Pseudomonas aeruginosa LES431
NoYes	Pseudomonas aeruginosa RP73
NoYes	Pseudomonas aeruginosa B136-33
NoYes	Pseudomonas aeruginosa PA1R
NoYes	Pseudomonas aeruginosa PA1
NoYes	Pseudomonas aeruginosa DK2
NoYes	Pseudomonas aeruginosa NCGM2.S1
NoYes	Pseudomonas aeruginosa M18
NoYes	Pseudomonas aeruginosa LESB58
NoYes	Pseudomonas aeruginosa PA7
NoYes	Pseudomonas aeruginosa PAO1
NoYes	Acinetobacter junii SH205
NoYes	Aeropyrum camini SY1 = JCM 12091
NoYes	Sulfolobus islandicus LAL14/1
NoYes	Sulfolobus islandicus REY15A
NoYes	Sulfolobus islandicus HVE10/4
NoYes	Sulfolobus islandicus Y.G.57.14
NoYes	Sulfolobus islandicus L.S.2.15
NoYes	Sulfolobus islandicus M.16.27
NoYes	Sulfolobus islandicus M.14.25
NoYes	Sulfolobus islandicus M.16.4
NoYes	Sulfolobus islandicus L.D.8.5
NoYes	Sulfolobus solfataricus 98/2
NoYes	Sulfolobus acidocaldarius SUSAZ
NoYes	Sulfolobus acidocaldarius Ron12/I
NoYes	Sulfolobus acidocaldarius N8
NoYes	Natrinema pellirubrum DSM 15624
NoYes	Natronococcus occultus SP4
NoYes	Natronobacterium gregoryi SP2
NoYes	Haloarcula hispanica N601
NoYes	Mycobacterium tuberculosis H37Rv
NoYes	Vibrio campbellii ATCC BAA-1116
NoYes	1_050719N (meta-genome)
NoYes	1_Upper_euphotic (meta-genome)
NoYes	2_050719S (meta-genome)
NoYes	4_050719Q (meta-genome)
NoYes	4_Deep_abyss (meta-genome)
NoYes	5_050719P (meta-genome)
NoYes	Activated sludge plasmid pool Morges-2009 (Newbler) (meta-genome)
NoYes	Activated sludge plasmid pool Visp-2009 (Newbler) (meta-genome)
NoYes	Air microbial communities Singapore indoor air filters 2 (meta-genome)
NoYes	Atta cephalotes fungus garden (ACEF) (meta-genome)
NoYes	Bath Hot Springs, filamentous community (meta-genome)
NoYes	Bath Hot Springs, planktonic community (meta-genome)
NoYes	Combined (meta-genome)
NoYes	Cyphomyrmex longiscapus fungus garden (meta-genome)
NoYes	Dendroctonus ponderosae beetle community (MPB hybrid beetle) (Lodgepole pine) (meta-genome)
NoYes	Dendroctonus ponderosae fungus gallery (Hybrid pine) (MPB hybrid gallery) (meta-genome)
NoYes	Dump bottom (Dump bottom) (meta-genome)
NoYes	Dump top (Dump top) (meta-genome)
NoYes	Endophytic microbiome from Rice (meta-genome)
NoYes	Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #1 (meta-genome)
NoYes	Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #2 (meta-genome)
NoYes	Fossil microbial community from Whale Fall at Santa Cruz Basin of the Pacific Ocean Sample #3 (meta-genome)
NoYes	Freshwater propionate enrichment of Brocadia fulgida (meta-genome)
NoYes	Fungus garden combined (combined) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden bottom (Fungus garden bottom) (meta-genome)
NoYes	Fungus garden microbial communities from Atta colombica in Panama, sample from fungus garden top (meta-genome)
NoYes	Groundwater dechlorinating community (KB-1) from synthetic mineral medium in Toronto, ON, sample from Site contaminated with chlorinated ethenes
NoYes	Guerrero Negro salt ponds hypersaline mat 06(P) (meta-genome)
NoYes	Guerrero Negro salt ponds hypersaline mat 08(T) (meta-genome)
NoYes	Hot Spring microbial communities from Yellowstone Obsidian Hot Spring, Sample 10594 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP8 from OSP Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP1 from Alice Springs, Crater Hills (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP10 from Narrow Gauge (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP11 from Octopus Springs (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP12 from Calcite Springs, Tower Falls Region (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP13 from Bechler Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP14 from OSP Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP15 from Mushroom Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP16 from Fairy Spring Red Layer (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP17 from Obsidian Pool Prime (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP18 from Washburn Springs #1 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP19 from Cistern Spring (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP2 from Nymph Lake 10 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP20 from Bath Lake Vista Annex - Purple-Sulfur Mats (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP3 from Monarch Geyser, Norris Geyser Basin (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP4 from Joseph's Coat Springs (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP5 from Bath Lake Vista Annex (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP6 from White Creek Site 3 (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP7 from Chocolate Pots (meta-genome)
NoYes	Hot spring microbial community from Yellowstone Hot Springs, sample YNP9 from Dragon Spring, Norris Geyser Basin (meta-genome)
NoYes	Human Gut Community Subject 8 (meta-genome)
NoYes	Macropus eugenii forestomach microbiome from Canberra, Australia, sample Macropus_eugenii_combined (meta-genome)
NoYes	Maize field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing corn (Zea may (meta-genome)
NoYes	Maize rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Soil sample from rhizosphere of corn (Zea mays))< (meta-genome)
NoYes	Marine anammox bioreactor enriched for Scalindua species (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment combined (v2) (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Formaldehyde enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Formate enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methane enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methanol enrichment (meta-genome)
NoYes	Methylotrophic community from Lake Washington sediment Methylamine enrichment (meta-genome)
NoYes	Miscanthus field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing Miscanthu (meta-genome)
NoYes	Miscanthus rhizosphere soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Rhizosphere soil sample of Miscanthus x giga (meta-genome)
NoYes	Mountain Pine Beetle microbial communities from Grand Prairie, Alberta, sample from Hybrid pine (MPB hybrid beetle) (meta-genome)
NoYes	Mouse Gut Community lean2 (meta-genome)
NoYes	Mouse Gut Community lean3 (meta-genome)
NoYes	Mouse Gut Community ob1 (meta-genome)
NoYes	Mouse Gut Community ob2 (meta-genome)
NoYes	NCBI 2017_08 genome
NoYes	Oak Ridge Pristine Groundwater FRC FW301 (meta-genome)
NoYes	Olavius algarvensis endosymbiont metagenome Delta1 (meta-genome)
NoYes	Olavius algarvensis endosymbiont metagenome Delta4 (meta-genome)
NoYes	Olavius algarvensis endosymbiont metagenome Gamma1 (meta-genome)
NoYes	Olavius algarvensis endosymbiont metagenome Gamma3 (meta-genome)
NoYes	simHC - Simulated High Complexity Metagenome (meta-genome)
NoYes	simLC - Simulated Low Complexity Metagenome (meta-genome)
NoYes	simMC - Simulated Medium Complexity Metagenome (meta-genome)
NoYes	Sludge/Australian, Phrap Assembly (meta-genome)
NoYes	Sludge/US, Jazz Assembly (meta-genome)
NoYes	Sludge/US, Phrap Assembly (meta-genome)
NoYes	Soil microbial communities from Minnesota Farm (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 1 Maryland Estuary CO2- (Maryland Estuary ambient) (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2- (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+ (Oak Ridge elevated CO2) (meta-genome)
NoYes	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2- (Oak Ridge ambient) (meta-genome)
NoYes	Soil microbial community from bioreactor at Alameda Naval Air Station, CA, contaminated with Chloroethene, Sample 196 (meta-genome)
NoYes	STRING v9.0.5 (STRING)
NoYes	Switchgrass field bulk soil microbial communities from University of Illinois Energy Farm, Urbana, IL (Bulk soil sample from field growing switchgr (meta-genome)
NoYes	Switchgrass rhizosphere microbial community from Michigan, US, sample from East Lansing bulk soil (meta-genome)
NoYes	Uniprot 2018_03 genome
NoYes	Uranium Contaminated Groundwater FW106 (meta-genome)
NoYes	Wastewater Terephthalate-degrading communities from Bioreactor (meta-genome)
NoYes	Global Ocean Sampling Expedition (GOS)
NoYes	NCBI plasmid sequences (Plasmids)
NoYes	PDB chains (SCOP 1.75) (PDB)
NoYes	Protein Data Bank (all PDB sequenc)
NoYes	SCOP2 SCOPe CATH ECOD (all domain sequ)
NoYes	TargetDB (Targets)
NoYes	The Salmonella enterica Pan-genome (meta-genome)
NoYes	ALL (only advised for small superfamilies)

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TorD-like alignments