SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 47113 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47113 - Histone-fold

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   137
Pan_troglodytes_76_2.1.4   (Chimpanzee)   67
Gorilla_gorilla_76_3.1   (Western gorilla)   64
Pongo_abelii_76_2   (Sumatran orangutan)   70
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   67
Papio_anubis_76   (Olive baboon)   61
Macaca_mulatta_76_1   (Rhesus monkey)   98
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   89
Otolemur_garnettii_76_3   (Small-eared galago)   77
Microcebus_murinus_76_1   (Gray mouse lemur)   59
Rattus_norvegicus_76_5.0   (Norway rat)   70
Mus_musculus_76_38   (House mouse)   110
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   56
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   57
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   85
Cavia_porcellus_76_3   (Domestic guinea pig)   53
Oryctolagus_cuniculus_76_2   (Rabbit)   65
Ochotona_princeps_76   (American pika)   68
Tupaia_belangeri_76   (Northern tree shrew)   30
Sus_scrofa_76_10.2   (Pig)   60
Bos_taurus_76_3.1   (Cattle)   150
Ovis_aries_76_3.1   (Sheep)   72
Vicugna_pacos_76_1   (Alpaca)   47
Tursiops_truncatus_76_1   (Bottlenose dolphin)   66
Mustela_putorius_furo_76_1.0   (Domestic ferret)   37
Ailuropoda_melanoleuca_76_1   (Giant panda)   72
Canis_familiaris_76_3.1   (Dog)   70
Felis_catus_76_6.2   (Domestic cat)   68
Equus_caballus_76_2   (Horse)   70
Myotis_lucifugus_76_2.0   (Little brown bat)   67
Pteropus_vampyrus_76_1   (Large flying fox)   48
Sorex_araneus_76_1   (European shrew)   76
Erinaceus_europaeus_76   (Western European hedgehog)   56
Procavia_capensis_76_1   (Cape rock hyrax)   52
Loxodonta_africana_76_3   (African savanna elephant)   78
Echinops_telfairi_76   (Small Madagascar hedgehog)   53
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   65
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   50
Macropus_eugenii_76_1.0   (Tammar wallaby)   38
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   33
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   30
Ornithorhynchus_anatinus_76_5   (Platypus)   90
Saccoglossus_kowalevskii_v3.0 117
Petromyzon_marinus_76_7.0   (Sea lamprey)   48
Meleagris_gallopavo_76_2   (Turkey)   24
Gallus_gallus_76_4   (Chicken)   22
Anas_platyrhynchos_76_1.0   (Mallard)   34
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   46
Ficedula_albicollis_76_1.0   (Collared flycatcher)   24
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   45
Anolis_carolinensis_76_2.0   (Green anole)   38
Xenopus_laevis_   (African clawed frog)   403
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   119
Latimeria_chalumnae_76_1   (Coelacanth)   26
Lepisosteus_oculatus_76   (Spotted gar)   17
Gadus_morhua_76_1   (Atlantic cod)   92
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   51
Takifugu_rubripes_76_4   (Torafugu)   139
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   134
Oryzias_latipes_76_1   (Japanese medaka)   53
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   24
Poecilia_formosa_76   (Amazon molly)   39
Oreochromis_niloticus_76_1.0   (Nile tilapia)   35
Astyanax_mexicanus_76   (Mexican tetra)   20
Danio_rerio_76_9   (Zebrafish)   155
Oikopleura_dioica 41
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   26
Ciona_intestinalis_76   (Vase tunicate)   11
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   350
Adineta_vaga 55
Octopus_bimaculoides_280 82
Crassostrea_gigas_22   (Pacific oyster)   40
Lottia_gigantea_   (Owl limpet)   107
Helobdella_robusta_ 52
Capitella_sp._I_ 83
Danaus_plexippus_OGS1.0   (Monarch butterfly)   16
Heliconius_melpomene_   (Postman butterfly)   9
Bombyx_mori_   (Domestic silkworm)   11
Nasonia_vitripennis_   (Jewel wasp)   76
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   29
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   19
Linepithema_humile_v1.1   (Argentine ant)   19
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   24
Solenopsis_invicta_v.2.2.3   (Red fire ant)   12
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   22
Atta_cephalotes_v1.1 24
Camponotus_floridanus_v3.3   (Florida carpenter ant)   22
Lucilia_cuprina   (Australian sheep blowfly)   14
Drosophila_grimshawi_1.3 153
Drosophila_willistoni_1.3 43
Drosophila_pseudoobscura_2.13 15
Drosophila_persimilis_1.3 42
Drosophila_suzukii 25
Drosophila_yakuba_1.3 17
Drosophila_simulans_1.3 74
Drosophila_sechellia_1.3 305
Drosophila_melanogaster_76_5   (Fruit fly)   106
Drosophila_erecta_1.3 151
Drosophila_ananassae_1.3 88
Drosophila_virilis_1.2 91
Drosophila_mojavensis_1.3 56
Megaselia_scalaris_22 18
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   65
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   103
Anopheles_darlingi_22   (American malaria mosquito)   7
Anopheles_gambiae_49_3j   (African malaria mosquito)   38
Tribolium_castaneum_3.0   (Red flour beetle)   20
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   26
Acyrthosiphon_pisum_   (Pea aphid)   20
Rhodnius_prolixus_22 29
Daphnia_pulex_   (Common water flea)   118
Strigamia_maritima_22 32
Sarcoptes_scabiei 16
Tetranychus_urticae_   (Two-spotted spider mite)   24
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   17
Pristionchus_pacificus_ 16
Meloidogyne_incognita_   (Southern root-knot nematode)   33
Meloidogyne_hapla_ 12
Onchocerca_volvulus_22 22
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   31
Caenorhabditis_japonica_ 24
Caenorhabditis_brenneri_ 147
Caenorhabditis_remanei_ 56
Caenorhabditis_elegans_76_235   (Roundworm)   76
Caenorhabditis_briggsae_2 49
Trichinella_spiralis_22 60
Hymenolepis_microstoma_ 15
Echinococcus_multilocularis_ 71
Echinococcus_granulosus_ 16
Taenia_solium_   (Pork tapeworm)   41
Schistosoma_mansoni_ 26
Mnemiopsis_leidyi   (Sea walnut)   6
Thelohanellus_kitauei 10
Acropora_digitifera_v1.0 15
Nematostella_vectensis_1.0   (Starlet sea anemone)   160
Hydra_vulgaris 19
Amphimedon_queenslandica 19
Trichoplax_adhaerens_ 16
Proterospongia_sp._ATCC_50818_ 15
Monosiga_brevicollis_ 15
Sphaeroforma_arctica_JP610_ 24
Capsaspora_owczarzaki_ATCC_30864_ 15
Conidiobolus_coronatus_NRRL28638_v1.0 16
Mortierella_verticillata_NRRL_6337_ 19
Phycomyces_blakesleeanus_ 26
Rhizopus_oryzae_RA_99-880_ 24
Mucor_circinelloides_ 20
Rhizomucor_miehei_CAU432_ 20
Malassezia_globosa_CBS_7966_ 16
Sporisorium_reilianum_22 6
Ustilago_maydis_ 7
Mixia_osmundae_IAM_14324_v1.0 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 19
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 21
Melampsora_laricis-populina_ 26
Rhodotorula_graminis_WP1_v1.0 17
Sporobolomyces_roseus_IAM_13481_ 26
Microbotryum_violaceum_22 18
Wallemia_sebi_v1.0 27
Sphaerobolus_stellatus_v1.0 25
Piloderma_croceum_F_1598_v1.0 22
Serpula_lacrymans_var._lacrymans_S7.9_ 18
Coniophora_puteana 18
Hydnomerulius_pinastri_v2.0 18
Paxillus_rubicundulus_Ve08.2h10_v1.0 17
Pisolithus_microcarpus_441_v1.0 15
Pisolithus_tinctorius_Marx_270_v1.0 13
Scleroderma_citrinum_Foug_A_v1.0 25
Coprinopsis_cinerea_okayama7_130_v3 12
Pleurotus_ostreatus_   (Oyster mushroom)   23
Amanita_thiersii_Skay4041_v1.0 14
Amanita_muscaria_Koide_v1.0   (Fly agaric)   21
Galerina_marginata_v1.0 14
Hebeloma_cylindrosporum_h7_v2.0 14
Laccaria_bicolor_S238N-H82_ 47
Agaricus_bisporus_var._bisporus_ 15
Schizophyllum_commune_ 21
Stereum_hirsutum_FP-91666_SS1__v1.0 14
Heterobasidion_annosum_ 17
Gloeophyllum_trabeumv1.0 17
Punctularia_strigosozonata_v1.0 16
Sebacina_vermifera_MAFF_305830_v1.0 19
Fomitiporia_mediterranea_v1.0 21
Tulasnella_calospora_AL13/4D_v1.0 25
Postia_placenta_ 19
Wolfiporia_cocos_MD-104_SS10__v1.0 15
Fomitopsis_pinicolav1.0 17
Fomitopsis_pinicola_FP-58527_SS1_v3.0 15
Phanerochaete_chrysosporium_RP-78_2.1 21
Dichomitus_squalens 19
Trametes_versicolor_v1.0 10
Tremella_mesenterica_   (Witches' butter)   12
Daldinia_eschscholzii_EC12_v1.0 9
Apiospora_montagnei_NRRL_25634_v1.0 11
Magnaporthe_poae_ATCC_64411_22 10
Magnaporthe_grisea_70-15_ 12
Podospora_anserina_ 8
Sporotrichum_thermophile_ATCC_42464_ 11
Thielavia_terrestris_NRRL_8126_ 9
Chaetomium_globosum_CBS_148.51_ 7
Neurospora_tetrasperma_ 9
Neurospora_discreta_FGSC_8579_ 8
Neurospora_crassa_OR74A_ 10
Cryphonectria_parasitica_   (Chestnut blight fungus)   13
Verticillium_albo-atrum_VaMs.102_ 7
Verticillium_dahliae_VdLs.17_ 10
Acremonium_alcalophilumv_1.0 9
Glomerella_graminicola_22 10
Fusarium_graminearum_ 10
Nectria_haematococca_mpVI_ 10
Fusarium_oxysporum_f._sp._lycopersici_4286_ 9
Fusarium_verticillioides_7600_ 9
Trichoderma_asperellum_CBS_433.97_v1.0 12
Trichoderma_atroviride_ 12
Trichoderma_citrinoviride_v1.0 9
Trichoderma_reesei_1.2 11
Trichoderma_virens_Gv29-8_ 13
Trichoderma_longibrachiatum_ATCC_18648_v1.0 11
Trichoderma_harzianum_CBS_226.95_v1.0 12
Amorphotheca_resinae_v1.0   (Creosote fungus)   11
Botrytis_cinerea_B05.10_ 11
Sclerotinia_sclerotiorum_ 9
Blumeria_graminis_22 10
Didymella_exigua_CBS_183.55_v1.0 10
Leptosphaeria_maculans_22 10
Setosphaeria_turcica_v1.0 11
Cochliobolus_miyabeanus_ATCC_44560_v1.0 11
Cochliobolus_victoriae_FI3_v1.0 11
Cochliobolus_carbonum_26-R-13_v1.0 11
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   12
Alternaria_brassicicola_ 7
Cochliobolus_lunatus_m118_v2.0 11
Pyrenophora_teres_f._teres_22 11
Pyrenophora_tritici-repentis_ 34
Stagonospora_nodorum_ 10
Mycosphaerella_graminicola_IPO323_ 13
Zasmidium_cellare_ATCC_36951_v1.0 12
Dothistroma_septosporum 10
Septoria_musiva_v1.0 26
Mycosphaerella_fijiensis_CIRAD86_ 26
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 9
Paracoccidioides_brasiliensis_Pb18_ 7
Coccidioides_posadasii_RMSCC_3488_ 7
Coccidioides_immitis_RS_ 8
Ajellomyces_dermatitidis_SLH14081_ 17
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 8
Microsporum_canis_CBS_113480_ 10
Trichophyton_equinum_CBS_127.97_ 9
Trichophyton_verrucosum_HKI_0517_ 5
Arthroderma_benhamiae_CBS_112371_ 4
Trichophyton_tonsurans_CBS_112818_ 9
Trichophyton_rubrum_CBS_118892_ 9
Uncinocarpus_reesii_1704_ 6
Aspergillus_zonatus_v1.0 9
Penicillium_chrysogenum_Wisconsin_54-1255_ 9
Penicillium_chrysogenum_v1.0 8
Aspergillus_acidus_v1.0 8
Aspergillus_fumigatus_Af293 6
Aspergillus_brasiliensis_v1.0 8
Aspergillus_nidulans_FGSC_A4_ 8
Aspergillus_sydowii_v1.0 8
Aspergillus_versicolor_v1.0 9
Aspergillus_glaucus 10
Aspergillus_carbonarius_ITEM_5010_ 8
Neosartorya_fischeri_NRRL_181_ 9
Aspergillus_terreus_NIH2624_ 8
Aspergillus_tubingensis_v1.0 8
Aspergillus_wentii_v1.0 10
Aspergillus_oryzae_RIB40_ 7
Aspergillus_niger_22 8
Aspergillus_niger_ATCC_1015_ 4
Aspergillus_flavus_NRRL3357_ 7
Aspergillus_clavatus_NRRL_1_ 8
Penicillium_marneffei_ATCC_18224_ 10
Tuber_melanosporum_Mel28_22 10
Tuber_melanosporum_Vittad_   (Perigord truffle)   11
Hansenula_polymorpha_v2.0 14
Dekkera_bruxellensis_CBS_2499_v2.0 15
Pichia_membranifaciensv1.0 16
Candida_tanzawaensis_NRRL_Y-17324__v1.0 12
Candida_dubliniensis_CD36_ 12
Candida_tropicalis_MYA-3404_ 12
Candida_parapsilosis_ 10
Candida_albicans_SC5314 10
Lodderomyces_elongisporus_NRRL_YB-4239_ 9
Babjeviella_inositovora_NRRL_Y-12698_v1.0 15
Pichia_stipitis_CBS_6054_ 15
Candida_guilliermondii_ATCC_6260_ 11
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 15
Debaromyces_hansenii 13
Wickerhamomyces_anomalus 14
Pichia_pastoris_GS115_ 7
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 8
Yarrowia_lipolytica_CLIB122 10
Candida_lusitaniae_ATCC_42720_ 10
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 14
Vanderwaltozyma_polyspora_DSM_70294_ 12
Candida_glabrata_CBS138 14
Kluyveromyces_thermotolerans_CBS_6340 13
Lachancea_kluyveri_ 11
Kluyveromyces_waltii 13
Ashbya_gossypii_ATCC_10895_ 13
Zygosaccharomyces_rouxii_ 11
Saccharomyces_mikatae_MIT 12
Saccharomyces_paradoxus_MIT 11
Saccharomyces_cerevisiae_76   (Baker's yeast)   12
Saccharomyces_bayanus_MIT 11
Kluyveromyces_lactis 11
Schizosaccharomyces_cryophilus_OY26_22 16
Schizosaccharomyces_octosporus_yFS286_ 16
Schizosaccharomyces_japonicus_yFS275_ 16
Schizosaccharomyces_pombe   (Fission yeast)   15
Catenaria_anguillulae_PL171_v1.0 17
Allomyces_macrogynus_ATCC_38327_ 16
Spizellomyces_punctatus_DAOM_BR117_ 15
Dictyostelium_discoideum 13
Dictyostelium_purpureum_ 23
Entamoeba_dispar_1.2 16
Entamoeba_invadens_1.2 15
Entamoeba_histolytica_1 13
Selaginella_moellendorffii_ 59
Pinus_taeda   (Loblolly pine)   126
Picea_abies   (Norway spruce)   95
Eucalyptus_grandis_v201   (Rose gum)   49
Theobroma_cacao_B97-61/B2_v1   (Cacao)   36
Gossypium_raimondii_v221 96
Citrus_clementina_v165 53
Citrus_sinensis_v154   (Sweet orange)   63
Thellungiella_halophila_v173 42
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   66
Capsella_rubella_v183 43
Arabidopsis_lyrata_   (Lyrate rockcress)   54
Arabidopsis_thaliana_10   (Thale cress)   66
Carica_papaya_   (Papaya)   30
Medicago_truncatula_   (Barrel medic)   97
Phaseolus_vulgaris_v186   (French bean)   65
Glycine_max_v109   (Soybean)   110
Cucumis_sativus_v122   (Cucumber)   51
Fragaria_vesca_   (Wild strawberry)   45
Malus_domestica_v196   (Apple)   80
Prunus_persica_v139   (Peach)   39
Linum_usitatissimum_v200   (Flax)   65
Manihot_esculenta_v147   (Cassava)   59
Populus_trichocarpa_v156   (Black cottonwood)   75
Vitis_vinifera_   (Wine grape)   48
Mimulus_guttatus_v140   (Spotted monkey flower)   76
Solanum_lycopersicum_v.2.3   (Tomato)   86
Solanum_tuberosum_   (Potato)   97
Actinidia_chinensis_Hongyang_ 35
Aquilegia_coerulea_v195 67
Triticum_urartu_22 115
Triticum_aestivum_22   (Bread wheat)   387
Aegilops_tauschii_22 117
Brachypodium_distachyon_   (Stiff brome)   63
Oryza_barthii_22   (African wild rice)   58
Oryza_meridionalis_22 30
Oryza_glumaepatula_22 51
Oryza_glaberrima   (African rice)   39
Oryza_punctata_22 47
Oryza_nivara_22 62
Oryza_brachyantha_22   (Malo sina)   42
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   51
Oryza_sativa_v193   (Rice)   49
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   49
Panicum_virgatum_v202   (Switchgrass)   101
Setaria_italica_v164   (Foxtail millet)   43
Zea_mays_subsp._mays_   (Maize)   128
Zea_mays_v181   (Maize)   133
Sorghum_bicolor_   (Sorghum)   58
Musa_balbisiana   (Balbis banana)   47
Musa_acuminata_22   (Wild Malaysian banana)   71
Amborella_trichopoda_22 40
Physcomitrella_patens 66
Coccomyxa_subellipsoidea_sp._C-169_v2 36
Asterochloris_sp._Cgr/DA1pho_v1.0 31
Chlorella_variabilis_sp._NC64A_ 36
Chlorella_vulgaris_ 36
Volvox_carteri_f._nagariensis_ 44
Volvox_carteri_v199 49
Chlamydomonas_reinhardtii_4.0 126
Ostreococcus_sp._RCC809_ 23
Ostreococcus_lucimarinus_CCE9901_ 17
Ostreococcus_tauri_ 18
Bathycoccus_prasinos_ 19
Micromonas_sp._RCC299_ 22
Micromonas_pusilla_CCMP1545_v3.0 23
Cyanidioschyzon_merolae_strain_10D_22 8
Cyanidioschyzon_merolae 11
Porphyridium_purpureum_02_2012 14
Thecamonas_trahens_ATCC_50062_ 13
Bigelowiella_natans_CCMP2755_22 22
Giardia_lamblia_2.3 12
Cyanophora_paradoxa_ 28
Leishmania_mexicana_2.4 22
Leishmania_major_strain_Friedlin_ 28
Leishmania_infantum_JPCM5_2.4 21
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 26
Trypanosoma_vivax_ 38
Trypanosoma_cruzi_strain_CL_Brener 23
Trypanosoma_congolense_2.4 11
Trypanosoma_brucei_gambiense_v4.1 27
Trypanosoma_brucei_TREU927_v4.1 48
Ectocarpus_siliculosus 36
Aureococcus_anophagefferens_ 52
Albugo_laibachii_22 16
Pythium_iwayamai_DAOM_BR242034_22 11
Pythium_arrhenomanes_ATCC_12531_22 7
Pythium_ultimum_v1.7-2 26
Pythium_aphanidermatum_DAOM_BR444_22 12
Pythium_irregulare_DAOM_BR486_22 11
Pythium_vexans_DAOM_BR484_22 12
Phytophthora_ramorum_1.1   (Sudden oak death agent)   16
Phytophthora_sojae_1.1 12
Phytophthora_infestans_T30-4_ 18
Phytophthora_capsici_ 19
Hyaloperonospora_arabidopsidis_22 14
Phaeodactylum_tricornutumCCAP_1055/1 15
Fragilariopsis_cylindrus 38
Thalassiosira_pseudonana_CCMP1335 27
Perkinsus_marinus_ATCC_50983_ 91
Paramecium_tetraurelia_ 41
Tetrahymena_thermophila_SB210_1_ 7
Ichthyophthirius_multifiliis_strain_G5_ 16
Cryptosporidium_hominis 8
Cryptosporidium_muris 8
Cryptosporidium_parvum_Iowa_II 8
Neospora_caninum 8
Toxoplasma_gondii_VEG 7
Toxoplasma_gondii_ME49 8
Toxoplasma_gondii_GT1 6
Babesia_bovis_T2Bo_ 14
Theileria_parva__ 7
Theileria_annulata 8
Plasmodium_falciparum_3D7_ 7
Plasmodium_vivax_SaI-1_7.0 8
Plasmodium_knowlesi_strain_H_ 7
Plasmodium_yoelii_ssp._yoelii_1_ 6
Plasmodium_chabaudi_ 8
Plasmodium_berghei_ANKA_ 8
Symbiodinium_minutum_clade_B1_v1.2 4
Naegleria_gruberi_ 17
Trichomonas_vaginalis_ 67
Guillardia_theta_CCMP2712_v1.0_ 26
Emiliania_huxleyi_CCMP1516_ 60
Gloeobacter_violaceus_PCC_7421 0
Anabaena_variabilis_ATCC_29413 1
Nostoc_punctiforme_PCC_73102 1
Mycoplasma_crocodyli_MP145 0
Olsenella_uli_DSM_7084 0
Rubrobacter_xylanophilus_DSM_9941 1
Nakamurella_multipartita_DSM_44233 1
Frankia_alni_ACN14a 1
Streptomyces_coelicolor_A3(2) 0
Streptomyces_sp._PAMC26508 0
Streptomyces_sp._SirexAA-E 0
Streptomyces_griseus_subsp._griseus_NBRC_13350 0
Streptomyces_violaceusniger_Tu_4113 1
Streptomyces_avermitilis_MA-4680 0
Streptomyces_scabiei_87.22 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1
Pseudonocardia_dioxanivorans_CB1190 1
Salinispora_tropica_CNB-440 0
Gordonia_bronchialis_DSM_43247 1
Rhodococcus_jostii_RHA1 3
Rhodococcus_opacus_B4 1
Nocardia_cyriacigeorgica_GUH-2 0
Nocardia_farcinica_IFM_10152 0
Arthrobacter_chlorophenolicus_A6 0
Micrococcus_luteus_NCTC_2665 1
Oceanithermus_profundus_DSM_14977 1
Thermus_sp._CCB_US3_UF1 1
Thermus_scotoductus_SA-01 1
Thermus_thermophilus_HB27 1
Clostridium_thermocellum_ATCC_27405 0
Ruminococcus_sp. 0
Acetobacterium_woodii_DSM_1030 0
Alkaliphilus_metalliredigens_QYMF 0
Clostridium_beijerinckii_NCIMB_8052 0
Mahella_australiensis_50-1_BON 0
Streptococcus_thermophilus_LMD-9 0
Geobacillus_thermoglucosidasius_C56-YS93 0
Lysinibacillus_sphaericus_C3-41 0
Anoxybacillus_flavithermus_WK1 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_cellulosilyticus_DSM_2522 0
Pelodictyon_phaeoclathratiforme_BU-1 0
Rhodothermus_marinus_DSM_4252 1
Zunongwangia_profunda_SM-A87 0
Gramella_forsetii_KT0803 0
Robiginitalea_biformata_HTCC2501 0
Flavobacterium_columnare_ATCC_49512 0
Flavobacterium_johnsoniae_UW101 0
Waddlia_chondrophila_WSU_86-1044 1
Simkania_negevensis_Z 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 0
Leptospira_interrogans_serovar_Lai_str._IPAV 0
Spirochaeta_thermophila_DSM_6192 0
Thermodesulfatator_indicus_DSM_15286 0
Thermovibrio_ammonificans_HB-1 1
Persephonella_marina_EX-H1 1
Aquifex_aeolicus_VF5 2
Dictyoglomus_turgidum_DSM_6724 0
Bacteriovorax_marinus_SJ 1
Bdellovibrio_bacteriovorus_HD100 1
Nautilia_profundicola_AmH 1
Nitratifractor_salsuginis_DSM_16511 1
Nitratiruptor_sp._SB155-2 1
Desulfovibrio_africanus_str._Walvis_Bay 0
Geobacter_bemidjiensis_Bem 0
Haliangium_ochraceum_DSM_14365 0
Burkholderia_xenovorans_LB400 0
Ralstonia_solanacearum_CFBP2957 0
Burkholderia_sp._RPE64 0
Burkholderia_sp._CCGE1002 0
Burkholderia_cenocepacia_HI2424 0
Herbaspirillum_seropedicae_SmR1 0
Bordetella_petrii_DSM_12804 0
Candidatus_Puniceispirillum_marinum_IMCC1322 0
Rickettsia_rickettsii_str._'Sheila_Smith' 0
Rhizobium_etli_CIAT_652 0
Legionella_pneumophila_str._Corby 0
Klebsiella_oxytoca_E718 0
Klebsiella_variicola_At-22 0
Klebsiella_pneumoniae_NTUH-K2044 0
Enterobacter_aerogenes_KCTC_2190 0
Pseudomonas_fluorescens_SBW25 0
Pseudomonas_sp._VLB120 0
Nanoarchaeum_equitans_Kin4-M 2
Candidatus_Caldiarchaeum_subterraneum 2
Cenarchaeum_symbiosum_A 1
Candidatus_Nitrosopumilus_sp._AR2 1
Nitrosopumilus_maritimus_SCM1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 2
Fervidicoccus_fontis_Kam940 0
Ignisphaera_aggregans_DSM_17230 0
Thermofilum_sp._1910b 1
Thermofilum_pendens_Hrk_5 1
Vulcanisaeta_moutnovskia_768-28 1
Vulcanisaeta_distributa_DSM_14429 1
Caldivirga_maquilingensis_IC-167 1
halophilic_archaeon_DL31 2
Methanocella_arvoryzae_MRE50 2
Methanocella_conradii_HZ254 2
Methanocella_paludicola_SANAE 2
Methanosaeta_harundinacea_6Ac 1
Methanosaeta_thermophila_PT 1
Methanosaeta_concilii_GP6 1
Methanosalsum_zhilinae_DSM_4017 1
Methanohalobium_evestigatum_Z-7303 1
Methanococcoides_burtonii_DSM_6242 1
Methanosarcina_acetivorans_C2A 1
Methanosarcina_mazei_Go1 1
Methanosarcina_barkeri_str._Fusaro 1
Methanohalophilus_mahii_DSM_5219 1
Methanosphaerula_palustris_E1-9c 1
Methanoregula_boonei_6A8 1
Methanospirillum_hungatei_JF-1 5
Methanocorpusculum_labreanum_Z 1
Methanoplanus_petrolearius_DSM_11571 1
Methanoculleus_bourgensis_MS2 2
Methanoculleus_marisnigri_JR1 2
Methanopyrus_kandleri_AV19 3
Ferroglobus_placidus_DSM_10642 2
Archaeoglobus_profundus_DSM_5631 3
Archaeoglobus_veneficus_SNP6 3
Archaeoglobus_fulgidus_DSM_4304 2
Thermococcus_sp._4557 4
Thermococcus_onnurineus_NA1 3
Thermococcus_kodakarensis_KOD1 4
Thermococcus_gammatolerans_EJ3 4
Thermococcus_sibiricus_MM_739 3
Thermococcus_barophilus_MP 3
Pyrococcus_sp._ST04 2
Pyrococcus_yayanosii_CH1 2
Pyrococcus_horikoshii_OT3 2
Pyrococcus_abyssi_GE5 2
Pyrococcus_furiosus_COM1 4
Salinarchaeum_sp._Harcht-Bsk1 1
Halopiger_xanaduensis_SH-6 1
Haloterrigena_turkmenica_DSM_5511 1
Natrinema_sp._J7-2 2
Natrialba_magadii_ATCC_43099 1
Halorubrum_lacusprofundi_ATCC_49239 1
Haloquadratum_walsbyi_DSM_16790 1
Halogeometricum_borinquense_DSM_11551 1
Haloferax_mediterranei_ATCC_33500 1
Haloferax_volcanii_DS2 3
Halomicrobium_mukohataei_DSM_12286 1
Halorhabdus_utahensis_DSM_12940 1
Natronomonas_pharaonis_DSM_2160 1
Haloarcula_hispanica_ATCC_33960 2
Haloarcula_marismortui_ATCC_43049 2
Halalkalicoccus_jeotgali_B3 4
Halobacterium_salinarum_R1 3
Halobacterium_sp._NRC-1 3
Methanotorris_igneus_Kol_5 3
Methanocaldococcus_sp._FS406-22 4
Methanocaldococcus_fervens_AG86 4
Methanocaldococcus_vulcanius_M7 5
methanocaldococcus_infernus_ME 2
Methanocaldococcus_jannaschii_DSM_2661 5
Methanothermococcus_okinawensis_IH1 2
Methanococcus_aeolicus_Nankai-3 2
Methanococcus_maripaludis_C5 2
Methanococcus_voltae_A3 2
Methanococcus_vannielii_SB 2
Methanothermus_fervidus_DSM_2088 2
Methanothermobacter_marburgensis_str._Marburg 3
Methanothermobacter_thermautotrophicus_str._Delta_H 3
Methanosphaera_stadtmanae_DSM_3091 6
Methanobrevibacter_sp._AbM4 3
Methanobrevibacter_ruminantium_M1 5
Methanobrevibacter_smithii_ATCC_35061 3
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 3

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   170
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   103
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   39
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   28
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   72
Cryptococcus_neoformans_var._grubii_H99_ 7
Cryptococcus_neoformans_B-3501A_ 8
Cryptococcus_neoformans_JEC21_ 8
Paracoccidioides_brasiliensis_Pb01_ 20
Paracoccidioides_brasiliensis_Pb03_ 10
Coccidioides_posadasii_str._Silveira_ 8
Coccidioides_immitis_RMSCC_3703_ 7
Coccidioides_immitis_RMSCC_2394_ 7
Coccidioides_immitis_H538.4_ 8
Ajellomyces_dermatitidis_ER-3_ 22
Histoplasma_capsulatum_H143 5
Histoplasma_capsulatum_H88 7
Histoplasma_capsulatum_G186AR 9
Aspergillus_fumigatus_A1163_ 7
Candida_albicans_WO-1_ 12
Saccharomyces_cerevisiae_UC5 8
Saccharomyces_cerevisiae_PW5 6
Saccharomyces_cerevisiae_FL100 8
Saccharomyces_cerevisiae_CLIB382 4
Saccharomyces_cerevisiae_CLIB324 9
Saccharomyces_cerevisiae_CBS7960 9
Saccharomyces_cerevisiae_YJM269 12
Saccharomyces_cerevisiae_T7 12
Saccharomyces_cerevisiae_FostersB 13
Saccharomyces_cerevisiae_FostersO 11
Saccharomyces_cerevisiae_VL3 11
Saccharomyces_cerevisiae_Vin13 12
Saccharomyces_cerevisiae_LalvinQA23 12
Saccharomyces_cerevisiae_AWRI796 10
Saccharomyces_cerevisiae_Sigma1278b 12
Saccharomyces_cerevisiae_W303 12
Saccharomyces_cerevisiae_JAY291 12
Saccharomyces_cerevisiae_AWRI1631 9
Saccharomyces_cerevisiae_YPS163 9
Saccharomyces_cerevisiae_M22 7
Saccharomyces_cerevisiae_T73 6
Saccharomyces_cerevisiae_CLIB215 10
Saccharomyces_cerevisiae_Y10 9
Saccharomyces_cerevisiae_YJM789_ 10
Saccharomyces_cerevisiae_YJM789 12
Saccharomyces_cerevisiae_RM11-1a 12
Saccharomyces_cerevisiae_RM11-1a_ 12
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   12
Schizosaccharomyces_pombe_972h-_ 15
Batrachochytrium_dendrobatidis_JEL423_ 10
Batrachochytrium_dendrobatidis_JAM81_ 13
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   36
Hordeum_vulgare_22   (Domesticated barley)   72
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   47
Trypanosoma_brucei_Lister_427_v4.1 48
Neospora_caninum_Nc-Liverpool_6.2 8
Plasmodium_falciparum_HB3_ 7
Plasmodium_falciparum_Dd2_ 3
Chroococcidiopsis_thermalis_PCC_7203 0
Synechococcus_sp._JA-2-3B'a(2-13) 0
Cyanothece_sp._PCC_7822 0
Cyanothece_sp._PCC_7424 0
Frankia_sp._EuI1c 1
Streptomyces_rapamycinicus_NRRL_5491 0
Streptomyces_venezuelae_ATCC_10712 0
Streptomyces_collinus_Tu_365 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1
Rhodococcus_erythropolis_CCM2595 1
Thermus_oshimai_JL-2 1
Thermus_thermophilus_JL-18 1
Thermus_thermophilus_SG0.5JP17-16 1
Thermus_thermophilus_HB8 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 0
Clostridium_pasteurianum_BC1 0
Clostridium_botulinum_BKT015925 0
Lactobacillus_helveticus_R0052 0
Streptococcus_pyogenes_MGAS1882 0
Streptococcus_pyogenes_MGAS10750 0
Streptococcus_pyogenes_MGAS10270 0
Streptococcus_pyogenes_MGAS9429 0
Streptococcus_pyogenes_MGAS315 0
Streptococcus_pyogenes_SSI-1 0
Streptococcus_thermophilus_MN-ZLW-002 0
Streptococcus_thermophilus_JIM_8232 0
Streptococcus_thermophilus_ND03 0
Streptococcus_thermophilus_CNRZ1066 0
Streptococcus_thermophilus_LMG_18311 0
Geobacillus_sp._Y4.1MC1 0
Bacillus_licheniformis_DSM_13_=_ATCC_14580 0
Bacillus_infantis_NRRL_B-14911 0
Bacillus_thuringiensis_HD-789 0
Bacillus_cereus_ATCC_10987 0
Staphylococcus_aureus_08BA02176 0
Staphylococcus_aureus_subsp._aureus_71193 0
Staphylococcus_aureus_subsp._aureus_S0385 0
Rhodothermus_marinus_SG0.5JP17-172 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 0
Leptospira_interrogans_serovar_Lai_str._56601 0
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 0
Spirochaeta_thermophila_DSM_6578 0
Bdellovibrio_exovorus_JSS 1
Bdellovibrio_bacteriovorus_str._Tiberius 1
Ralstonia_solanacearum_FQY_4 0
Ralstonia_solanacearum_PSI07 0
Ralstonia_solanacearum_CMR15 0
Ralstonia_solanacearum_GMI1000 0
Burkholderia_cenocepacia_MC0-3 0
Burkholderia_cenocepacia_AU_1054 0
Sinorhizobium_fredii_USDA_257 0
Sinorhizobium_meliloti_GR4 0
Sinorhizobium_meliloti_Rm41 0
Legionella_pneumophila_str._Paris 0
Legionella_pneumophila_str._Lens 0
Legionella_pneumophila_subsp._pneumophila_LPE509 0
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 0
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila 0
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 0
Serratia_plymuthica_S13 0
Serratia_plymuthica_4Rx13 0
Klebsiella_oxytoca_KCTC_1686 0
Klebsiella_pneumoniae_JM45 0
Klebsiella_pneumoniae_CG43 0
Klebsiella_pneumoniae_KCTC_2242 0
Klebsiella_pneumoniae_342 0
Klebsiella_pneumoniae_subsp._pneumoniae_1084 0
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 0
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 0
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 0
Escherichia_coli_ED1a 0
Pseudomonas_denitrificans_ATCC_13867 0
Pseudomonas_syringae_pv._phaseolicola_1448A 0
Pseudomonas_monteilii_SB3101 0
Pseudomonas_monteilii_SB3078 0
Pseudomonas_putida_H8234 0
Pseudomonas_putida_HB3267 0
Candidatus_Nitrososphaera_gargensis_Ga9.2 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1
Methanomethylovorans_hollandica_DSM_15978 1
Methanolobus_psychrophilus_R15 1
Methanosarcina_mazei_Tuc01 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2
Archaeoglobus_sulfaticallidus_PM70-1 3
Thermococcus_sp._AM4 4
Thermococcus_sp._CL1 4
Thermococcus_litoralis_DSM_5473 3
Pyrococcus_sp._NA2 2
Pyrococcus_furiosus_DSM_3638 4
Halovivax_ruber_XH-70 1
Natrinema_pellirubrum_DSM_15624 2
Natronococcus_occultus_SP4 1
Natronobacterium_gregoryi_SP2 1
Haloquadratum_walsbyi_C23 1
Halorhabdus_tiamatea_SARL4B 1
Natronomonas_moolapensis_8.8.11 1
Haloarcula_hispanica_N601 2
Methanococcus_maripaludis_X1 2
Methanococcus_maripaludis_C6 2
Methanococcus_maripaludis_C7 2
Methanococcus_maripaludis_S2 2
Methanobacterium_sp._SWAN-1 3

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   83
Pan_troglodytes_69_2.1.4   (Chimpanzee)   66
Gorilla_gorilla_69_3.1   (Western gorilla)   63
Pongo_abelii_69_2   (Sumatran orangutan)   69
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   67
Macaca_mulatta_69_1   (Rhesus monkey)   92
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   64
Otolemur_garnettii_69_3   (Small-eared galago)   77
Microcebus_murinus_69_1   (Gray mouse lemur)   59
Rattus_norvegicus_69_3.4   (Norway rat)   65
Mus_musculus_69_38   (House mouse)   82
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   56
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   57
Cavia_porcellus_69_3   (Domestic guinea pig)   52
Oryctolagus_cuniculus_69_2   (Rabbit)   68
Ochotona_princeps_69   (American pika)   68
Tupaia_belangeri_69   (Northern tree shrew)   30
Sus_scrofa_69_10.2   (Pig)   59
Bos_taurus_69_3.1   (Cattle)   149
Vicugna_pacos_69_1   (Alpaca)   47
Tursiops_truncatus_69_1   (Bottlenose dolphin)   66
Mustela_putorius_furo_69_1.0   (Domestic ferret)   35
Ailuropoda_melanoleuca_69_1   (Giant panda)   71
Canis_familiaris_69_3.1   (Dog)   65
Felis_catus_69   (Domestic cat)   38
Equus_caballus_69_2   (Horse)   70
Myotis_lucifugus_69_2.0   (Little brown bat)   64
Pteropus_vampyrus_69_1   (Large flying fox)   48
Sorex_araneus_69_1   (European shrew)   76
Erinaceus_europaeus_69   (Western European hedgehog)   56
Procavia_capensis_69_1   (Cape rock hyrax)   52
Loxodonta_africana_69_3   (African savanna elephant)   77
Echinops_telfairi_69   (Small Madagascar hedgehog)   53
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   57
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   50
Macropus_eugenii_69_1.0   (Tammar wallaby)   38
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   31
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   27
Ornithorhynchus_anatinus_69_5   (Platypus)   87
Petromyzon_marinus_69_7.0   (Sea lamprey)   46
Meleagris_gallopavo_69_2   (Turkey)   24
Gallus_gallus_69_2   (Chicken)   29
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   44
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   45
Anolis_carolinensis_69_2.0   (Green anole)   38
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   117
Latimeria_chalumnae_69_1   (Coelacanth)   25
Gadus_morhua_69_1   (Atlantic cod)   90
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   50
Takifugu_rubripes_69_4   (Torafugu)   93
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   97
Oryzias_latipes_69_1   (Japanese medaka)   52
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   24
Oreochromis_niloticus_69_1.0   (Nile tilapia)   34
Danio_rerio_69_9   (Zebrafish)   120
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   25
Ciona_intestinalis_69   (Vase tunicate)   11
Drosophila_melanogaster_69_5   (Fruit fly)   95
Caenorhabditis_elegans_69_215   (Roundworm)   71
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   12
Arabidopsis_thaliana_10   (Thale cress)   48

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   153
Homo_sapiens__(NCBI_version)   (Human)   82
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   82
Heliconius_numata__(Incomplete) 13
Loa_loa_v3.3_(Request)   (Eye worm)   25
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   18
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   19
Moniliophthora_perniciosa_FA553__(Genome_survey) 14
Encephalitozoon_intestinalis__(endoparasite) 10
Encephalitozoon_cuniculi_(endoparasite) 10
Pinus_sylvestris__(Incomplete)   (Scots pine)   2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   20
Lotus_japonicus__(Early_assembly) 75
Malus_x_domestica_(Duplicate)   (Apple)   81
Ricinus_communis__(Early_assembly)   (Castor bean)   42
Nicotiana_benthamiana_0.4.4_(Early_draft) 101
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   86
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   86
Phoenix_dactylifera__(Early_draft)   (Date palm)   11
Guillardia_theta_(nucleomorph) 5
NCBI_plasmid_sequences_(Plasmids) 15
NCBI_viral_sequences_(Viral) 7
TargetDB__(Targets) 85
Core_Eukaryotic_Genes_458_(CEGMA) 3
Protozoadb_2010_08_(Protozoadb) 547
Protein_Data_Bank_(all_PDB_sequenc) 1456
UniProt__viral_sequences_(Viral) 6
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 3163
PDB_chains_(SCOP_1.75)_(PDB) 73
STRING_v9.0.5_(STRING) 4790
NCBI_2017_08_genome 30791
Uniprot_2018_03_genome 58957

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