SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for 81383,_gap_ superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

81383 - F-box domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   10
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_76_3.1   (Western gorilla)   4
Pongo_abelii_76_2   (Sumatran orangutan)   6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3
Papio_anubis_76   (Olive baboon)   3
Macaca_mulatta_76_1   (Rhesus monkey)   7
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   7
Otolemur_garnettii_76_3   (Small-eared galago)   4
Microcebus_murinus_76_1   (Gray mouse lemur)   7
Rattus_norvegicus_76_5.0   (Norway rat)   5
Mus_musculus_76_38   (House mouse)   9
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2
Cavia_porcellus_76_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_76_2   (Rabbit)   2
Ochotona_princeps_76   (American pika)   5
Tupaia_belangeri_76   (Northern tree shrew)   2
Sus_scrofa_76_10.2   (Pig)   1
Bos_taurus_76_3.1   (Cattle)   5
Ovis_aries_76_3.1   (Sheep)   4
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_76_1   (Giant panda)   7
Canis_familiaris_76_3.1   (Dog)   2
Felis_catus_76_6.2   (Domestic cat)   4
Equus_caballus_76_2   (Horse)   5
Myotis_lucifugus_76_2.0   (Little brown bat)   49
Pteropus_vampyrus_76_1   (Large flying fox)   3
Sorex_araneus_76_1   (European shrew)   4
Erinaceus_europaeus_76   (Western European hedgehog)   3
Procavia_capensis_76_1   (Cape rock hyrax)   1
Loxodonta_africana_76_3   (African savanna elephant)   6
Echinops_telfairi_76   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_76_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_76_5   (Platypus)   4
Saccoglossus_kowalevskii_v3.0 14
Petromyzon_marinus_76_7.0   (Sea lamprey)   3
Meleagris_gallopavo_76_2   (Turkey)   3
Gallus_gallus_76_4   (Chicken)   2
Anas_platyrhynchos_76_1.0   (Mallard)   2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   6
Anolis_carolinensis_76_2.0   (Green anole)   2
Xenopus_laevis_   (African clawed frog)   7
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_76_1   (Coelacanth)   9
Lepisosteus_oculatus_76   (Spotted gar)   6
Gadus_morhua_76_1   (Atlantic cod)   7
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6
Takifugu_rubripes_76_4   (Torafugu)   5
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5
Oryzias_latipes_76_1   (Japanese medaka)   5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   9
Poecilia_formosa_76   (Amazon molly)   6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6
Astyanax_mexicanus_76   (Mexican tetra)   6
Danio_rerio_76_9   (Zebrafish)   6
Oikopleura_dioica 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3
Adineta_vaga 31
Octopus_bimaculoides_280 12
Crassostrea_gigas_22   (Pacific oyster)   9
Lottia_gigantea_   (Owl limpet)   6
Helobdella_robusta_ 6
Capitella_sp._I_ 5
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6
Heliconius_melpomene_   (Postman butterfly)   4
Bombyx_mori_   (Domestic silkworm)   2
Nasonia_vitripennis_   (Jewel wasp)   8
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4
Linepithema_humile_v1.1   (Argentine ant)   3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5
Atta_cephalotes_v1.1 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 3
Drosophila_willistoni_1.3 2
Drosophila_pseudoobscura_2.13 1
Drosophila_persimilis_1.3 1
Drosophila_suzukii 3
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 2
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 2
Drosophila_ananassae_1.3 3
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 3
Megaselia_scalaris_22 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3
Tribolium_castaneum_3.0   (Red flour beetle)   6
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   3
Rhodnius_prolixus_22 14
Daphnia_pulex_   (Common water flea)   9
Strigamia_maritima_22 5
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   6
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   6
Pristionchus_pacificus_ 31
Meloidogyne_incognita_   (Southern root-knot nematode)   57
Meloidogyne_hapla_ 24
Onchocerca_volvulus_22 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6
Caenorhabditis_japonica_ 7
Caenorhabditis_brenneri_ 46
Caenorhabditis_remanei_ 65
Caenorhabditis_elegans_76_235   (Roundworm)   76
Caenorhabditis_briggsae_2 30
Trichinella_spiralis_22 1
Hymenolepis_microstoma_ 4
Echinococcus_multilocularis_ 4
Echinococcus_granulosus_ 3
Taenia_solium_   (Pork tapeworm)   3
Schistosoma_mansoni_ 4
Mnemiopsis_leidyi   (Sea walnut)   4
Acropora_digitifera_v1.0 7
Nematostella_vectensis_1.0   (Starlet sea anemone)   7
Hydra_vulgaris 6
Amphimedon_queenslandica 3
Trichoplax_adhaerens_ 6
Proterospongia_sp._ATCC_50818_ 5
Monosiga_brevicollis_ 2
Sphaeroforma_arctica_JP610_ 5
Capsaspora_owczarzaki_ATCC_30864_ 1
Conidiobolus_coronatus_NRRL28638_v1.0 5
Mortierella_verticillata_NRRL_6337_ 35
Phycomyces_blakesleeanus_ 52
Rhizopus_oryzae_RA_99-880_ 13
Mucor_circinelloides_ 33
Rhizomucor_miehei_CAU432_ 15
Malassezia_globosa_CBS_7966_ 2
Sporisorium_reilianum_22 5
Ustilago_maydis_ 5
Mixia_osmundae_IAM_14324_v1.0 5
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3
Melampsora_laricis-populina_ 4
Rhodotorula_graminis_WP1_v1.0 11
Sporobolomyces_roseus_IAM_13481_ 4
Microbotryum_violaceum_22 4
Wallemia_sebi_v1.0 5
Sphaerobolus_stellatus_v1.0 73
Piloderma_croceum_F_1598_v1.0 43
Serpula_lacrymans_var._lacrymans_S7.9_ 23
Coniophora_puteana 52
Hydnomerulius_pinastri_v2.0 33
Paxillus_rubicundulus_Ve08.2h10_v1.0 16
Pisolithus_microcarpus_441_v1.0 15
Pisolithus_tinctorius_Marx_270_v1.0 22
Scleroderma_citrinum_Foug_A_v1.0 29
Coprinopsis_cinerea_okayama7_130_v3 65
Pleurotus_ostreatus_   (Oyster mushroom)   47
Amanita_thiersii_Skay4041_v1.0 23
Amanita_muscaria_Koide_v1.0   (Fly agaric)   71
Galerina_marginata_v1.0 134
Hebeloma_cylindrosporum_h7_v2.0 71
Laccaria_bicolor_S238N-H82_ 47
Agaricus_bisporus_var._bisporus_ 40
Schizophyllum_commune_ 62
Stereum_hirsutum_FP-91666_SS1__v1.0 48
Heterobasidion_annosum_ 19
Gloeophyllum_trabeumv1.0 32
Punctularia_strigosozonata_v1.0 28
Sebacina_vermifera_MAFF_305830_v1.0 76
Fomitiporia_mediterranea_v1.0 39
Tulasnella_calospora_AL13/4D_v1.0 82
Postia_placenta_ 55
Wolfiporia_cocos_MD-104_SS10__v1.0 44
Fomitopsis_pinicolav1.0 52
Fomitopsis_pinicola_FP-58527_SS1_v3.0 62
Phanerochaete_chrysosporium_RP-78_2.1 42
Dichomitus_squalens 49
Trametes_versicolor_v1.0 69
Tremella_mesenterica_   (Witches' butter)   7
Daldinia_eschscholzii_EC12_v1.0 23
Apiospora_montagnei_NRRL_25634_v1.0 34
Magnaporthe_poae_ATCC_64411_22 13
Magnaporthe_grisea_70-15_ 17
Podospora_anserina_ 13
Sporotrichum_thermophile_ATCC_42464_ 12
Thielavia_terrestris_NRRL_8126_ 17
Chaetomium_globosum_CBS_148.51_ 10
Neurospora_tetrasperma_ 12
Neurospora_discreta_FGSC_8579_ 10
Neurospora_crassa_OR74A_ 9
Cryphonectria_parasitica_   (Chestnut blight fungus)   10
Verticillium_albo-atrum_VaMs.102_ 6
Verticillium_dahliae_VdLs.17_ 9
Acremonium_alcalophilumv_1.0 10
Glomerella_graminicola_22 10
Fusarium_graminearum_ 21
Nectria_haematococca_mpVI_ 31
Fusarium_oxysporum_f._sp._lycopersici_4286_ 15
Fusarium_verticillioides_7600_ 15
Trichoderma_asperellum_CBS_433.97_v1.0 20
Trichoderma_atroviride_ 28
Trichoderma_citrinoviride_v1.0 16
Trichoderma_reesei_1.2 15
Trichoderma_virens_Gv29-8_ 20
Trichoderma_longibrachiatum_ATCC_18648_v1.0 14
Trichoderma_harzianum_CBS_226.95_v1.0 19
Amorphotheca_resinae_v1.0   (Creosote fungus)   14
Botrytis_cinerea_B05.10_ 10
Sclerotinia_sclerotiorum_ 9
Blumeria_graminis_22 5
Didymella_exigua_CBS_183.55_v1.0 12
Leptosphaeria_maculans_22 9
Setosphaeria_turcica_v1.0 23
Cochliobolus_miyabeanus_ATCC_44560_v1.0 20
Cochliobolus_victoriae_FI3_v1.0 21
Cochliobolus_carbonum_26-R-13_v1.0 19
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   12
Alternaria_brassicicola_ 12
Cochliobolus_lunatus_m118_v2.0 20
Pyrenophora_teres_f._teres_22 13
Pyrenophora_tritici-repentis_ 13
Stagonospora_nodorum_ 24
Mycosphaerella_graminicola_IPO323_ 19
Zasmidium_cellare_ATCC_36951_v1.0 60
Dothistroma_septosporum 22
Septoria_musiva_v1.0 18
Mycosphaerella_fijiensis_CIRAD86_ 42
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 18
Paracoccidioides_brasiliensis_Pb18_ 11
Coccidioides_posadasii_RMSCC_3488_ 18
Coccidioides_immitis_RS_ 19
Ajellomyces_dermatitidis_SLH14081_ 12
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 13
Microsporum_canis_CBS_113480_ 13
Trichophyton_equinum_CBS_127.97_ 11
Trichophyton_verrucosum_HKI_0517_ 12
Arthroderma_benhamiae_CBS_112371_ 14
Trichophyton_tonsurans_CBS_112818_ 16
Trichophyton_rubrum_CBS_118892_ 16
Uncinocarpus_reesii_1704_ 8
Aspergillus_zonatus_v1.0 10
Penicillium_chrysogenum_Wisconsin_54-1255_ 22
Penicillium_chrysogenum_v1.0 24
Aspergillus_acidus_v1.0 28
Aspergillus_fumigatus_Af293 15
Aspergillus_brasiliensis_v1.0 24
Aspergillus_nidulans_FGSC_A4_ 16
Aspergillus_sydowii_v1.0 35
Aspergillus_versicolor_v1.0 21
Aspergillus_glaucus 27
Aspergillus_carbonarius_ITEM_5010_ 17
Neosartorya_fischeri_NRRL_181_ 17
Aspergillus_terreus_NIH2624_ 12
Aspergillus_tubingensis_v1.0 21
Aspergillus_wentii_v1.0 28
Aspergillus_oryzae_RIB40_ 18
Aspergillus_niger_22 21
Aspergillus_niger_ATCC_1015_ 16
Aspergillus_flavus_NRRL3357_ 17
Aspergillus_clavatus_NRRL_1_ 16
Penicillium_marneffei_ATCC_18224_ 14
Tuber_melanosporum_Mel28_22 15
Tuber_melanosporum_Vittad_   (Perigord truffle)   15
Hansenula_polymorpha_v2.0 0
Dekkera_bruxellensis_CBS_2499_v2.0 2
Pichia_membranifaciensv1.0 2
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4
Candida_dubliniensis_CD36_ 6
Candida_tropicalis_MYA-3404_ 8
Candida_parapsilosis_ 5
Candida_albicans_SC5314 7
Lodderomyces_elongisporus_NRRL_YB-4239_ 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5
Pichia_stipitis_CBS_6054_ 5
Candida_guilliermondii_ATCC_6260_ 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3
Debaromyces_hansenii 7
Wickerhamomyces_anomalus 6
Pichia_pastoris_GS115_ 2
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 0
Yarrowia_lipolytica_CLIB122 44
Candida_lusitaniae_ATCC_42720_ 6
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4
Vanderwaltozyma_polyspora_DSM_70294_ 5
Candida_glabrata_CBS138 4
Kluyveromyces_thermotolerans_CBS_6340 5
Lachancea_kluyveri_ 5
Kluyveromyces_waltii 5
Ashbya_gossypii_ATCC_10895_ 3
Zygosaccharomyces_rouxii_ 4
Saccharomyces_mikatae_MIT 3
Saccharomyces_paradoxus_MIT 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   3
Saccharomyces_bayanus_MIT 4
Kluyveromyces_lactis 5
Schizosaccharomyces_cryophilus_OY26_22 1
Schizosaccharomyces_octosporus_yFS286_ 1
Schizosaccharomyces_japonicus_yFS275_ 1
Schizosaccharomyces_pombe   (Fission yeast)   2
Catenaria_anguillulae_PL171_v1.0 14
Allomyces_macrogynus_ATCC_38327_ 24
Spizellomyces_punctatus_DAOM_BR117_ 20
Dictyostelium_discoideum 4
Dictyostelium_purpureum_ 3
Entamoeba_dispar_1.2 5
Entamoeba_invadens_1.2 4
Entamoeba_histolytica_1 6
Selaginella_moellendorffii_ 112
Pinus_taeda   (Loblolly pine)   60
Picea_abies   (Norway spruce)   51
Eucalyptus_grandis_v201   (Rose gum)   140
Theobroma_cacao_B97-61/B2_v1   (Cacao)   115
Gossypium_raimondii_v221 207
Citrus_clementina_v165 172
Citrus_sinensis_v154   (Sweet orange)   163
Thellungiella_halophila_v173 323
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   285
Capsella_rubella_v183 318
Arabidopsis_lyrata_   (Lyrate rockcress)   331
Arabidopsis_thaliana_10   (Thale cress)   250
Carica_papaya_   (Papaya)   51
Medicago_truncatula_   (Barrel medic)   613
Phaseolus_vulgaris_v186   (French bean)   82
Glycine_max_v109   (Soybean)   208
Cucumis_sativus_v122   (Cucumber)   79
Fragaria_vesca_   (Wild strawberry)   391
Malus_domestica_v196   (Apple)   195
Prunus_persica_v139   (Peach)   198
Linum_usitatissimum_v200   (Flax)   179
Manihot_esculenta_v147   (Cassava)   102
Populus_trichocarpa_v156   (Black cottonwood)   150
Vitis_vinifera_   (Wine grape)   35
Mimulus_guttatus_v140   (Spotted monkey flower)   327
Solanum_lycopersicum_v.2.3   (Tomato)   131
Solanum_tuberosum_   (Potato)   282
Actinidia_chinensis_Hongyang_ 82
Aquilegia_coerulea_v195 299
Triticum_urartu_22 460
Triticum_aestivum_22   (Bread wheat)   219
Aegilops_tauschii_22 639
Brachypodium_distachyon_   (Stiff brome)   301
Oryza_barthii_22   (African wild rice)   247
Oryza_meridionalis_22 238
Oryza_glumaepatula_22 296
Oryza_glaberrima   (African rice)   261
Oryza_punctata_22 226
Oryza_nivara_22 308
Oryza_brachyantha_22   (Malo sina)   92
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   361
Oryza_sativa_v193   (Rice)   357
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   79
Panicum_virgatum_v202   (Switchgrass)   593
Setaria_italica_v164   (Foxtail millet)   370
Zea_mays_subsp._mays_   (Maize)   120
Zea_mays_v181   (Maize)   132
Sorghum_bicolor_   (Sorghum)   280
Musa_balbisiana   (Balbis banana)   95
Musa_acuminata_22   (Wild Malaysian banana)   62
Amborella_trichopoda_22 64
Physcomitrella_patens 31
Coccomyxa_subellipsoidea_sp._C-169_v2 5
Asterochloris_sp._Cgr/DA1pho_v1.0 3
Chlorella_variabilis_sp._NC64A_ 11
Chlorella_vulgaris_ 4
Volvox_carteri_f._nagariensis_ 13
Volvox_carteri_v199 13
Chlamydomonas_reinhardtii_4.0 13
Ostreococcus_sp._RCC809_ 3
Ostreococcus_lucimarinus_CCE9901_ 3
Ostreococcus_tauri_ 4
Bathycoccus_prasinos_ 2
Micromonas_sp._RCC299_ 7
Micromonas_pusilla_CCMP1545_v3.0 9
Cyanidioschyzon_merolae_strain_10D_22 0
Cyanidioschyzon_merolae 0
Porphyridium_purpureum_02_2012 5
Thecamonas_trahens_ATCC_50062_ 9
Bigelowiella_natans_CCMP2755_22 5
Cyanophora_paradoxa_ 115
Leishmania_mexicana_2.4 1
Leishmania_major_strain_Friedlin_ 0
Leishmania_infantum_JPCM5_2.4 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2
Trypanosoma_vivax_ 5
Trypanosoma_cruzi_strain_CL_Brener 2
Trypanosoma_congolense_2.4 1
Trypanosoma_brucei_gambiense_v4.1 2
Trypanosoma_brucei_TREU927_v4.1 2
Ectocarpus_siliculosus 2
Aureococcus_anophagefferens_ 3
Albugo_laibachii_22 2
Pythium_iwayamai_DAOM_BR242034_22 3
Pythium_arrhenomanes_ATCC_12531_22 3
Pythium_ultimum_v1.7-2 5
Pythium_aphanidermatum_DAOM_BR444_22 3
Pythium_irregulare_DAOM_BR486_22 5
Pythium_vexans_DAOM_BR484_22 6
Phytophthora_ramorum_1.1   (Sudden oak death agent)   4
Phytophthora_sojae_1.1 3
Phytophthora_infestans_T30-4_ 4
Phytophthora_capsici_ 6
Hyaloperonospora_arabidopsidis_22 1
Phaeodactylum_tricornutumCCAP_1055/1 3
Fragilariopsis_cylindrus 8
Thalassiosira_pseudonana_CCMP1335 4
Perkinsus_marinus_ATCC_50983_ 2
Paramecium_tetraurelia_ 5
Tetrahymena_thermophila_SB210_1_ 1
Cryptosporidium_muris 1
Cryptosporidium_parvum_Iowa_II 1
Neospora_caninum 1
Toxoplasma_gondii_VEG 0
Toxoplasma_gondii_ME49 0
Toxoplasma_gondii_GT1 0
Plasmodium_falciparum_3D7_ 0
Plasmodium_vivax_SaI-1_7.0 1
Plasmodium_knowlesi_strain_H_ 2
Symbiodinium_minutum_clade_B1_v1.2 4
Naegleria_gruberi_ 77
Guillardia_theta_CCMP2712_v1.0_ 7
Emiliania_huxleyi_CCMP1516_ 60
Candidatus_Amoebophilus_asiaticus_5a2 1
Candidatus_Protochlamydia_amoebophila_UWE25 0
Parachlamydia_acanthamoebae_UV-7 10
Burkholderia_rhizoxinica_HKI_454 3
Xanthomonas_axonopodis_pv._citri_str._306 1
Coxiella_burnetii_Dugway_5J108-111 0

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   13
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   71
Cryptococcus_neoformans_var._grubii_H99_ 6
Cryptococcus_neoformans_B-3501A_ 7
Cryptococcus_neoformans_JEC21_ 5
Paracoccidioides_brasiliensis_Pb01_ 10
Paracoccidioides_brasiliensis_Pb03_ 10
Coccidioides_posadasii_str._Silveira_ 19
Coccidioides_immitis_RMSCC_3703_ 15
Coccidioides_immitis_RMSCC_2394_ 19
Coccidioides_immitis_H538.4_ 15
Ajellomyces_dermatitidis_ER-3_ 10
Histoplasma_capsulatum_H143 9
Histoplasma_capsulatum_H88 13
Histoplasma_capsulatum_G186AR 13
Aspergillus_fumigatus_A1163_ 19
Candida_albicans_WO-1_ 5
Saccharomyces_cerevisiae_UC5 3
Saccharomyces_cerevisiae_PW5 2
Saccharomyces_cerevisiae_FL100 1
Saccharomyces_cerevisiae_CLIB324 1
Saccharomyces_cerevisiae_CBS7960 2
Saccharomyces_cerevisiae_YJM269 3
Saccharomyces_cerevisiae_T7 3
Saccharomyces_cerevisiae_FostersB 3
Saccharomyces_cerevisiae_FostersO 1
Saccharomyces_cerevisiae_VL3 2
Saccharomyces_cerevisiae_Vin13 2
Saccharomyces_cerevisiae_LalvinQA23 2
Saccharomyces_cerevisiae_AWRI796 2
Saccharomyces_cerevisiae_Sigma1278b 2
Saccharomyces_cerevisiae_W303 3
Saccharomyces_cerevisiae_JAY291 3
Saccharomyces_cerevisiae_AWRI1631 1
Saccharomyces_cerevisiae_YPS163 1
Saccharomyces_cerevisiae_M22 2
Saccharomyces_cerevisiae_T73 0
Saccharomyces_cerevisiae_CLIB215 3
Saccharomyces_cerevisiae_Y10 0
Saccharomyces_cerevisiae_YJM789_ 3
Saccharomyces_cerevisiae_YJM789 3
Saccharomyces_cerevisiae_RM11-1a 3
Saccharomyces_cerevisiae_RM11-1a_ 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   3
Schizosaccharomyces_pombe_972h-_ 2
Batrachochytrium_dendrobatidis_JEL423_ 6
Batrachochytrium_dendrobatidis_JAM81_ 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   110
Hordeum_vulgare_22   (Domesticated barley)   286
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   355
Trypanosoma_brucei_Lister_427_v4.1 2
Neospora_caninum_Nc-Liverpool_6.2 1
Plasmodium_falciparum_HB3_ 0
Plasmodium_falciparum_Dd2_ 0
Xanthomonas_citri_subsp._citri_Aw12879 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1
Xanthomonas_axonopodis_Xac29-1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1
Legionella_pneumophila_str._Paris 2
Legionella_pneumophila_str._Lens 1
Legionella_pneumophila_subsp._pneumophila_LPE509 2
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 2
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 2
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 2

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Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   4
Pan_troglodytes_69_2.1.4   (Chimpanzee)   2
Gorilla_gorilla_69_3.1   (Western gorilla)   4
Pongo_abelii_69_2   (Sumatran orangutan)   5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   2
Macaca_mulatta_69_1   (Rhesus monkey)   4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4
Otolemur_garnettii_69_3   (Small-eared galago)   4
Microcebus_murinus_69_1   (Gray mouse lemur)   7
Rattus_norvegicus_69_3.4   (Norway rat)   4
Mus_musculus_69_38   (House mouse)   5
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3
Cavia_porcellus_69_3   (Domestic guinea pig)   4
Oryctolagus_cuniculus_69_2   (Rabbit)   3
Ochotona_princeps_69   (American pika)   5
Tupaia_belangeri_69   (Northern tree shrew)   2
Sus_scrofa_69_10.2   (Pig)   1
Bos_taurus_69_3.1   (Cattle)   5
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3
Ailuropoda_melanoleuca_69_1   (Giant panda)   7
Canis_familiaris_69_3.1   (Dog)   2
Felis_catus_69   (Domestic cat)   2
Equus_caballus_69_2   (Horse)   5
Myotis_lucifugus_69_2.0   (Little brown bat)   32
Pteropus_vampyrus_69_1   (Large flying fox)   3
Sorex_araneus_69_1   (European shrew)   4
Erinaceus_europaeus_69   (Western European hedgehog)   3
Procavia_capensis_69_1   (Cape rock hyrax)   1
Loxodonta_africana_69_3   (African savanna elephant)   4
Echinops_telfairi_69   (Small Madagascar hedgehog)   4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   5
Macropus_eugenii_69_1.0   (Tammar wallaby)   3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2
Ornithorhynchus_anatinus_69_5   (Platypus)   4
Petromyzon_marinus_69_7.0   (Sea lamprey)   3
Meleagris_gallopavo_69_2   (Turkey)   3
Gallus_gallus_69_2   (Chicken)   2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4
Anolis_carolinensis_69_2.0   (Green anole)   4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2
Latimeria_chalumnae_69_1   (Coelacanth)   5
Gadus_morhua_69_1   (Atlantic cod)   7
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   6
Takifugu_rubripes_69_4   (Torafugu)   5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5
Oryzias_latipes_69_1   (Japanese medaka)   5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   9
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5
Danio_rerio_69_9   (Zebrafish)   5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   2
Caenorhabditis_elegans_69_215   (Roundworm)   67
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   3
Arabidopsis_thaliana_10   (Thale cress)   232

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   13
Homo_sapiens__(NCBI_version)   (Human)   5
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   5
Loa_loa_v3.3_(Request)   (Eye worm)   4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   7
Moniliophthora_perniciosa_FA553__(Genome_survey) 8
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3
Lotus_japonicus__(Early_assembly) 207
Malus_x_domestica_(Duplicate)   (Apple)   195
Ricinus_communis__(Early_assembly)   (Castor bean)   77
Nicotiana_benthamiana_0.4.4_(Early_draft) 152
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   131
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   131
Phoenix_dactylifera__(Early_draft)   (Date palm)   13
NCBI_plasmid_sequences_(Plasmids) 2
TargetDB__(Targets) 125
NCBI_viral_sequences_(Viral) 149
STRING_v9.0.5_(STRING) 2851
NCBI_2017_08_genome 25404
Uniprot_2018_03_genome 120588
UniProt__viral_sequences_(Viral) 22
Protein_Data_Bank_(all_PDB_sequenc) 5
Protozoadb_2010_08_(Protozoadb) 41

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