SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,101936 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

101936 - DNA-binding pseudobarrel domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Selaginella_moellendorffii_ 5
Pinus_taeda   (Loblolly pine)   1
Picea_abies   (Norway spruce)   3
Eucalyptus_grandis_v201   (Rose gum)   27
Theobroma_cacao_B97-61/B2_v1   (Cacao)   11
Gossypium_raimondii_v221 24
Citrus_clementina_v165 18
Citrus_sinensis_v154   (Sweet orange)   13
Thellungiella_halophila_v173 18
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   20
Capsella_rubella_v183 20
Arabidopsis_lyrata_   (Lyrate rockcress)   27
Arabidopsis_thaliana_10   (Thale cress)   27
Carica_papaya_   (Papaya)   11
Medicago_truncatula_   (Barrel medic)   38
Phaseolus_vulgaris_v186   (French bean)   12
Glycine_max_v109   (Soybean)   14
Cucumis_sativus_v122   (Cucumber)   8
Fragaria_vesca_   (Wild strawberry)   21
Malus_domestica_v196   (Apple)   22
Prunus_persica_v139   (Peach)   19
Linum_usitatissimum_v200   (Flax)   11
Manihot_esculenta_v147   (Cassava)   19
Populus_trichocarpa_v156   (Black cottonwood)   17
Vitis_vinifera_   (Wine grape)   10
Mimulus_guttatus_v140   (Spotted monkey flower)   21
Solanum_lycopersicum_v.2.3   (Tomato)   18
Solanum_tuberosum_   (Potato)   28
Actinidia_chinensis_Hongyang_ 11
Aquilegia_coerulea_v195 19
Triticum_urartu_22 19
Triticum_aestivum_22   (Bread wheat)   29
Aegilops_tauschii_22 26
Brachypodium_distachyon_   (Stiff brome)   10
Oryza_barthii_22   (African wild rice)   12
Oryza_meridionalis_22 8
Oryza_glumaepatula_22 19
Oryza_glaberrima   (African rice)   9
Oryza_punctata_22 10
Oryza_nivara_22 24
Oryza_brachyantha_22   (Malo sina)   5
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   10
Oryza_sativa_v193   (Rice)   10
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   11
Panicum_virgatum_v202   (Switchgrass)   25
Setaria_italica_v164   (Foxtail millet)   9
Zea_mays_subsp._mays_   (Maize)   19
Zea_mays_v181   (Maize)   25
Sorghum_bicolor_   (Sorghum)   11
Musa_balbisiana   (Balbis banana)   3
Musa_acuminata_22   (Wild Malaysian banana)   7
Amborella_trichopoda_22 4
Physcomitrella_patens 5
Coccomyxa_subellipsoidea_sp._C-169_v2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 0
Chlorella_variabilis_sp._NC64A_ 1
Chlorella_vulgaris_ 2
Chlamydomonas_reinhardtii_4.0 0
Micromonas_sp._RCC299_ 0
Micromonas_pusilla_CCMP1545_v3.0 0

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Strains
Genome     Number
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   15
Hordeum_vulgare_22   (Domesticated barley)   30
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8
Taylorella_equigenitalis_14/56 1

Longest transcript per gene
Genome     Number
Arabidopsis_thaliana_10   (Thale cress)   27

Others
Genome     Number
Lotus_japonicus__(Early_assembly) 18
Malus_x_domestica_(Duplicate)   (Apple)   22
Ricinus_communis__(Early_assembly)   (Castor bean)   13
Nicotiana_benthamiana_0.4.4_(Early_draft) 32
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   18
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   18
Phoenix_dactylifera__(Early_draft)   (Date palm)   5
Protein_Data_Bank_(all_PDB_sequenc) 0
STRING_v9.0.5_(STRING) 122
NCBI_2017_08_genome 1498
TargetDB__(Targets) 21
Uniprot_2018_03_genome 5811

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