SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for _gap_,47986 superfamilies in groups of genomes

The selected domain combination is the occurrence of the following superfamily domains in N- to C-Terminal order:

47986 - DEATH domain

Phylogenetic distribution

Other domain architectures with a similar genomic distribution.
See the phylogenetic distribution for this domain architecture.


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Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all sequences containing the chosen domain combination (listed below) in that genome.

Complete genomes
Genome     Number
Homo_sapiens_76_38   (Human)   29
Pan_troglodytes_76_2.1.4   (Chimpanzee)   9
Gorilla_gorilla_76_3.1   (Western gorilla)   9
Pongo_abelii_76_2   (Sumatran orangutan)   6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7
Papio_anubis_76   (Olive baboon)   6
Macaca_mulatta_76_1   (Rhesus monkey)   14
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   18
Otolemur_garnettii_76_3   (Small-eared galago)   5
Microcebus_murinus_76_1   (Gray mouse lemur)   3
Rattus_norvegicus_76_5.0   (Norway rat)   6
Mus_musculus_76_38   (House mouse)   12
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   7
Cavia_porcellus_76_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_76_2   (Rabbit)   6
Ochotona_princeps_76   (American pika)   5
Tupaia_belangeri_76   (Northern tree shrew)   5
Sus_scrofa_76_10.2   (Pig)   11
Bos_taurus_76_3.1   (Cattle)   7
Ovis_aries_76_3.1   (Sheep)   9
Vicugna_pacos_76_1   (Alpaca)   2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_76_1   (Giant panda)   8
Canis_familiaris_76_3.1   (Dog)   10
Felis_catus_76_6.2   (Domestic cat)   9
Equus_caballus_76_2   (Horse)   7
Myotis_lucifugus_76_2.0   (Little brown bat)   6
Pteropus_vampyrus_76_1   (Large flying fox)   3
Sorex_araneus_76_1   (European shrew)   3
Erinaceus_europaeus_76   (Western European hedgehog)   3
Procavia_capensis_76_1   (Cape rock hyrax)   5
Loxodonta_africana_76_3   (African savanna elephant)   6
Echinops_telfairi_76   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   11
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_76_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   9
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_76_5   (Platypus)   3
Saccoglossus_kowalevskii_v3.0 42
Petromyzon_marinus_76_7.0   (Sea lamprey)   2
Meleagris_gallopavo_76_2   (Turkey)   7
Gallus_gallus_76_4   (Chicken)   7
Anas_platyrhynchos_76_1.0   (Mallard)   4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10
Anolis_carolinensis_76_2.0   (Green anole)   5
Xenopus_laevis_   (African clawed frog)   6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_76_1   (Coelacanth)   6
Lepisosteus_oculatus_76   (Spotted gar)   10
Gadus_morhua_76_1   (Atlantic cod)   8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   3
Takifugu_rubripes_76_4   (Torafugu)   6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   7
Oryzias_latipes_76_1   (Japanese medaka)   4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5
Poecilia_formosa_76   (Amazon molly)   8
Oreochromis_niloticus_76_1.0   (Nile tilapia)   12
Astyanax_mexicanus_76   (Mexican tetra)   10
Danio_rerio_76_9   (Zebrafish)   9
Oikopleura_dioica 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5
Ciona_intestinalis_76   (Vase tunicate)   3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   34
Adineta_vaga 11
Octopus_bimaculoides_280 11
Crassostrea_gigas_22   (Pacific oyster)   17
Lottia_gigantea_   (Owl limpet)   16
Helobdella_robusta_ 7
Capitella_sp._I_ 17
Danaus_plexippus_OGS1.0   (Monarch butterfly)   0
Heliconius_melpomene_   (Postman butterfly)   2
Bombyx_mori_   (Domestic silkworm)   4
Nasonia_vitripennis_   (Jewel wasp)   1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2
Linepithema_humile_v1.1   (Argentine ant)   4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3
Atta_cephalotes_v1.1 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3
Lucilia_cuprina   (Australian sheep blowfly)   2
Drosophila_grimshawi_1.3 2
Drosophila_willistoni_1.3 3
Drosophila_pseudoobscura_2.13 2
Drosophila_persimilis_1.3 2
Drosophila_suzukii 2
Drosophila_yakuba_1.3 2
Drosophila_simulans_1.3 2
Drosophila_sechellia_1.3 2
Drosophila_melanogaster_76_5   (Fruit fly)   3
Drosophila_erecta_1.3 3
Drosophila_ananassae_1.3 2
Drosophila_virilis_1.2 3
Drosophila_mojavensis_1.3 2
Megaselia_scalaris_22 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4
Anopheles_darlingi_22   (American malaria mosquito)   2
Anopheles_gambiae_49_3j   (African malaria mosquito)   4
Tribolium_castaneum_3.0   (Red flour beetle)   2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3
Acyrthosiphon_pisum_   (Pea aphid)   3
Rhodnius_prolixus_22 3
Daphnia_pulex_   (Common water flea)   3
Strigamia_maritima_22 3
Sarcoptes_scabiei 1
Tetranychus_urticae_   (Two-spotted spider mite)   0
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1
Pristionchus_pacificus_ 0
Meloidogyne_incognita_   (Southern root-knot nematode)   0
Meloidogyne_hapla_ 0
Onchocerca_volvulus_22 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   0
Caenorhabditis_japonica_ 0
Caenorhabditis_brenneri_ 0
Caenorhabditis_remanei_ 2
Caenorhabditis_elegans_76_235   (Roundworm)   0
Caenorhabditis_briggsae_2 0
Trichinella_spiralis_22 0
Hymenolepis_microstoma_ 0
Echinococcus_multilocularis_ 1
Echinococcus_granulosus_ 1
Taenia_solium_   (Pork tapeworm)   2
Schistosoma_mansoni_ 0
Mnemiopsis_leidyi   (Sea walnut)   5
Acropora_digitifera_v1.0 36
Nematostella_vectensis_1.0   (Starlet sea anemone)   4
Hydra_vulgaris 4
Amphimedon_queenslandica 19
Trichoplax_adhaerens_ 20
Eubacterium_eligens_ATCC_27750 1

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Strains
Genome     Number
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   0
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   0

Longest transcript per gene
Genome     Number
Homo_sapiens_69_37   (Human)   7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   8
Gorilla_gorilla_69_3.1   (Western gorilla)   8
Pongo_abelii_69_2   (Sumatran orangutan)   6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5
Macaca_mulatta_69_1   (Rhesus monkey)   8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   8
Otolemur_garnettii_69_3   (Small-eared galago)   5
Microcebus_murinus_69_1   (Gray mouse lemur)   3
Rattus_norvegicus_69_3.4   (Norway rat)   6
Mus_musculus_69_38   (House mouse)   7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5
Cavia_porcellus_69_3   (Domestic guinea pig)   6
Oryctolagus_cuniculus_69_2   (Rabbit)   6
Ochotona_princeps_69   (American pika)   5
Tupaia_belangeri_69   (Northern tree shrew)   5
Sus_scrofa_69_10.2   (Pig)   10
Bos_taurus_69_3.1   (Cattle)   7
Vicugna_pacos_69_1   (Alpaca)   2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8
Ailuropoda_melanoleuca_69_1   (Giant panda)   8
Canis_familiaris_69_3.1   (Dog)   8
Felis_catus_69   (Domestic cat)   6
Equus_caballus_69_2   (Horse)   7
Myotis_lucifugus_69_2.0   (Little brown bat)   6
Pteropus_vampyrus_69_1   (Large flying fox)   3
Sorex_araneus_69_1   (European shrew)   3
Erinaceus_europaeus_69   (Western European hedgehog)   3
Procavia_capensis_69_1   (Cape rock hyrax)   5
Loxodonta_africana_69_3   (African savanna elephant)   6
Echinops_telfairi_69   (Small Madagascar hedgehog)   2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   8
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4
Macropus_eugenii_69_1.0   (Tammar wallaby)   5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   8
Ornithorhynchus_anatinus_69_5   (Platypus)   3
Petromyzon_marinus_69_7.0   (Sea lamprey)   2
Meleagris_gallopavo_69_2   (Turkey)   6
Gallus_gallus_69_2   (Chicken)   5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9
Anolis_carolinensis_69_2.0   (Green anole)   5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   6
Latimeria_chalumnae_69_1   (Coelacanth)   6
Gadus_morhua_69_1   (Atlantic cod)   8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3
Takifugu_rubripes_69_4   (Torafugu)   3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   6
Oryzias_latipes_69_1   (Japanese medaka)   4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   9
Danio_rerio_69_9   (Zebrafish)   7
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4
Ciona_intestinalis_69   (Vase tunicate)   3
Drosophila_melanogaster_69_5   (Fruit fly)   3
Caenorhabditis_elegans_69_215   (Roundworm)   0

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Others
Genome     Number
Homo_sapiens_75_37_(old_version_GRC)   (Human)   29
Homo_sapiens__(NCBI_version)   (Human)   13
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7
Loa_loa_v3.3_(Request)   (Eye worm)   0
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   0
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   0
NCBI_plasmid_sequences_(Plasmids) 1
TargetDB__(Targets) 11
Protein_Data_Bank_(all_PDB_sequenc) 4
STRING_v9.0.5_(STRING) 279
Uniprot_2018_03_genome 7869
NCBI_2017_08_genome 4245
NCBI_viral_sequences_(Viral) 6
UniProt__viral_sequences_(Viral) 15

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