SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for SBT domain superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SBT domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 22 22
Pinus_taeda   (Loblolly pine)   14 13
Picea_abies   (Norway spruce)   9 9
Eucalyptus_grandis_v201   (Rose gum)   25 25
Theobroma_cacao_B97-61/B2_v1   (Cacao)   17 17
Gossypium_raimondii_v221 72 72
Citrus_clementina_v165 33 33
Citrus_sinensis_v154   (Sweet orange)   58 58
Thellungiella_halophila_v173 21 21
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   29 29
Capsella_rubella_v183 19 19
Arabidopsis_lyrata_   (Lyrate rockcress)   15 15
Arabidopsis_thaliana_10   (Thale cress)   30 30
Carica_papaya_   (Papaya)   11 11
Medicago_truncatula_   (Barrel medic)   28 28
Phaseolus_vulgaris_v186   (French bean)   28 28
Glycine_max_v109   (Soybean)   55 55
Cucumis_sativus_v122   (Cucumber)   17 17
Fragaria_vesca_   (Wild strawberry)   16 16
Malus_domestica_v196   (Apple)   44 42
Prunus_persica_v139   (Peach)   17 17
Linum_usitatissimum_v200   (Flax)   33 32
Manihot_esculenta_v147   (Cassava)   24 24
Populus_trichocarpa_v156   (Black cottonwood)   35 35
Vitis_vinifera_   (Wine grape)   19 19
Mimulus_guttatus_v140   (Spotted monkey flower)   18 18
Solanum_lycopersicum_v.2.3   (Tomato)   17 17
Solanum_tuberosum_   (Potato)   32 32
Actinidia_chinensis_Hongyang_ 30 30
Aquilegia_coerulea_v195 24 24
Triticum_urartu_22 13 13
Triticum_aestivum_22   (Bread wheat)   37 37
Aegilops_tauschii_22 18 18
Brachypodium_distachyon_   (Stiff brome)   19 18
Oryza_barthii_22   (African wild rice)   26 26
Oryza_meridionalis_22 24 24
Oryza_glumaepatula_22 26 26
Oryza_glaberrima   (African rice)   17 17
Oryza_punctata_22 28 28
Oryza_nivara_22 34 33
Oryza_brachyantha_22   (Malo sina)   18 18
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   29 29
Oryza_sativa_v193   (Rice)   29 29
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   33 32
Panicum_virgatum_v202   (Switchgrass)   36 36
Setaria_italica_v164   (Foxtail millet)   21 21
Zea_mays_subsp._mays_   (Maize)   52 51
Zea_mays_v181   (Maize)   58 56
Sorghum_bicolor_   (Sorghum)   18 18
Musa_balbisiana   (Balbis banana)   60 58
Musa_acuminata_22   (Wild Malaysian banana)   58 58
Amborella_trichopoda_22 12 12
Physcomitrella_patens 14 14
Coccomyxa_subellipsoidea_sp._C-169_v2 4 4
Asterochloris_sp._Cgr/DA1pho_v1.0 4 4
Chlorella_variabilis_sp._NC64A_ 40 38
Chlorella_vulgaris_ 3 3
Volvox_carteri_f._nagariensis_ 24 24
Volvox_carteri_v199 12 12
Chlamydomonas_reinhardtii_4.0 23 23
Ostreococcus_lucimarinus_CCE9901_ 1 1
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 6 6
Micromonas_pusilla_CCMP1545_v3.0 3 3

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   17 17
Hordeum_vulgare_22   (Domesticated barley)   28 28
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   21 19

Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   17 17

Others
Genome     Number   Proteins
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 16 16
Malus_x_domestica_(Duplicate)   (Apple)   44 42
Ricinus_communis__(Early_assembly)   (Castor bean)   15 15
Nicotiana_benthamiana_0.4.4_(Early_draft) 39 38
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   17 17
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   17 17
Phoenix_dactylifera__(Early_draft)   (Date palm)   5 5
PDB_chains_(SCOP_1.75)_(PDB) 3 3
Uniprot_2018_03_genome 3188 3165
NCBI_2017_08_genome 3238 3234
Protein_Data_Bank_(all_PDB_sequenc) 3 3
TargetDB__(Targets) 3 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 9 9
STRING_v9.0.5_(STRING) 196 193

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