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Domain combinations for BAR/IMD domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a BAR/IMD domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   353 350
Pan_troglodytes_76_2.1.4   (Chimpanzee)   70 70
Gorilla_gorilla_76_3.1   (Western gorilla)   87 86
Pongo_abelii_76_2   (Sumatran orangutan)   70 70
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   75 74
Papio_anubis_76   (Olive baboon)   79 79
Macaca_mulatta_76_1   (Rhesus monkey)   118 118
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   187 185
Otolemur_garnettii_76_3   (Small-eared galago)   70 70
Microcebus_murinus_76_1   (Gray mouse lemur)   67 60
Rattus_norvegicus_76_5.0   (Norway rat)   95 95
Mus_musculus_76_38   (House mouse)   209 209
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   67 63
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   68 68
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   76 74
Cavia_porcellus_76_3   (Domestic guinea pig)   70 70
Oryctolagus_cuniculus_76_2   (Rabbit)   67 66
Ochotona_princeps_76   (American pika)   70 63
Tupaia_belangeri_76   (Northern tree shrew)   69 60
Sus_scrofa_76_10.2   (Pig)   77 77
Bos_taurus_76_3.1   (Cattle)   81 81
Ovis_aries_76_3.1   (Sheep)   88 88
Vicugna_pacos_76_1   (Alpaca)   41 38
Tursiops_truncatus_76_1   (Bottlenose dolphin)   66 62
Mustela_putorius_furo_76_1.0   (Domestic ferret)   68 68
Ailuropoda_melanoleuca_76_1   (Giant panda)   82 81
Canis_familiaris_76_3.1   (Dog)   91 90
Felis_catus_76_6.2   (Domestic cat)   73 73
Equus_caballus_76_2   (Horse)   92 89
Myotis_lucifugus_76_2.0   (Little brown bat)   67 66
Pteropus_vampyrus_76_1   (Large flying fox)   66 66
Sorex_araneus_76_1   (European shrew)   54 47
Erinaceus_europaeus_76   (Western European hedgehog)   61 55
Procavia_capensis_76_1   (Cape rock hyrax)   80 65
Loxodonta_africana_76_3   (African savanna elephant)   110 110
Echinops_telfairi_76   (Small Madagascar hedgehog)   65 58
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   85 84
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   42 38
Macropus_eugenii_76_1.0   (Tammar wallaby)   75 61
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   86 85
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   72 72
Ornithorhynchus_anatinus_76_5   (Platypus)   79 76
Saccoglossus_kowalevskii_v3.0 78 75
Petromyzon_marinus_76_7.0   (Sea lamprey)   39 39
Meleagris_gallopavo_76_2   (Turkey)   70 70
Gallus_gallus_76_4   (Chicken)   71 71
Anas_platyrhynchos_76_1.0   (Mallard)   64 64
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   65 64
Ficedula_albicollis_76_1.0   (Collared flycatcher)   60 60
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   82 82
Anolis_carolinensis_76_2.0   (Green anole)   69 68
Xenopus_laevis_   (African clawed frog)   130 130
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   95 95
Latimeria_chalumnae_76_1   (Coelacanth)   90 89
Lepisosteus_oculatus_76   (Spotted gar)   100 99
Gadus_morhua_76_1   (Atlantic cod)   99 97
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   131 130
Takifugu_rubripes_76_4   (Torafugu)   375 374
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   122 122
Oryzias_latipes_76_1   (Japanese medaka)   131 131
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   103 103
Poecilia_formosa_76   (Amazon molly)   105 104
Oreochromis_niloticus_76_1.0   (Nile tilapia)   143 143
Astyanax_mexicanus_76   (Mexican tetra)   106 105
Danio_rerio_76_9   (Zebrafish)   193 193
Oikopleura_dioica 23 23
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   72 70
Ciona_intestinalis_76   (Vase tunicate)   35 35
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   36 36
Adineta_vaga 82 82
Octopus_bimaculoides_280 44 44
Crassostrea_gigas_22   (Pacific oyster)   31 30
Lottia_gigantea_   (Owl limpet)   33 32
Helobdella_robusta_ 47 47
Capitella_sp._I_ 34 34
Danaus_plexippus_OGS1.0   (Monarch butterfly)   26 26
Heliconius_melpomene_   (Postman butterfly)   21 21
Bombyx_mori_   (Domestic silkworm)   24 24
Nasonia_vitripennis_   (Jewel wasp)   23 23
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   69 69
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   26 26
Linepithema_humile_v1.1   (Argentine ant)   26 26
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   33 33
Solenopsis_invicta_v.2.2.3   (Red fire ant)   27 27
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   26 26
Atta_cephalotes_v1.1 29 29
Camponotus_floridanus_v3.3   (Florida carpenter ant)   25 25
Lucilia_cuprina   (Australian sheep blowfly)   25 25
Drosophila_grimshawi_1.3 21 21
Drosophila_willistoni_1.3 20 20
Drosophila_pseudoobscura_2.13 20 20
Drosophila_persimilis_1.3 23 23
Drosophila_suzukii 25 23
Drosophila_yakuba_1.3 22 22
Drosophila_simulans_1.3 20 20
Drosophila_sechellia_1.3 18 18
Drosophila_melanogaster_76_5   (Fruit fly)   81 81
Drosophila_erecta_1.3 20 20
Drosophila_ananassae_1.3 20 20
Drosophila_virilis_1.2 21 21
Drosophila_mojavensis_1.3 20 20
Megaselia_scalaris_22 13 13
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   32 31
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   32 32
Anopheles_darlingi_22   (American malaria mosquito)   23 22
Anopheles_gambiae_49_3j   (African malaria mosquito)   30 30
Tribolium_castaneum_3.0   (Red flour beetle)   26 25
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   22 22
Acyrthosiphon_pisum_   (Pea aphid)   24 24
Rhodnius_prolixus_22 22 22
Daphnia_pulex_   (Common water flea)   30 30
Strigamia_maritima_22 27 27
Sarcoptes_scabiei 20 20
Tetranychus_urticae_   (Two-spotted spider mite)   24 23
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   25 25
Pristionchus_pacificus_ 25 25
Meloidogyne_incognita_   (Southern root-knot nematode)   13 13
Meloidogyne_hapla_ 12 12
Onchocerca_volvulus_22 25 25
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   43 43
Caenorhabditis_japonica_ 22 22
Caenorhabditis_brenneri_ 28 28
Caenorhabditis_remanei_ 28 28
Caenorhabditis_elegans_76_235   (Roundworm)   58 58
Caenorhabditis_briggsae_2 25 25
Trichinella_spiralis_22 30 30
Hymenolepis_microstoma_ 23 23
Echinococcus_multilocularis_ 25 25
Echinococcus_granulosus_ 25 25
Taenia_solium_   (Pork tapeworm)   24 24
Schistosoma_mansoni_ 31 31
Mnemiopsis_leidyi   (Sea walnut)   26 26
Thelohanellus_kitauei 12 12
Acropora_digitifera_v1.0 31 30
Nematostella_vectensis_1.0   (Starlet sea anemone)   36 36
Hydra_vulgaris 33 33
Amphimedon_queenslandica 37 37
Trichoplax_adhaerens_ 27 27
Proterospongia_sp._ATCC_50818_ 33 33
Monosiga_brevicollis_ 29 28
Sphaeroforma_arctica_JP610_ 19 19
Capsaspora_owczarzaki_ATCC_30864_ 39 39
Conidiobolus_coronatus_NRRL28638_v1.0 15 15
Mortierella_verticillata_NRRL_6337_ 25 25
Phycomyces_blakesleeanus_ 35 34
Rhizopus_oryzae_RA_99-880_ 34 34
Mucor_circinelloides_ 37 36
Rhizomucor_miehei_CAU432_ 34 34
Malassezia_globosa_CBS_7966_ 20 20
Sporisorium_reilianum_22 13 13
Ustilago_maydis_ 13 13
Mixia_osmundae_IAM_14324_v1.0 16 16
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 17 16
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 15 15
Melampsora_laricis-populina_ 13 13
Rhodotorula_graminis_WP1_v1.0 15 15
Sporobolomyces_roseus_IAM_13481_ 10 10
Microbotryum_violaceum_22 14 14
Wallemia_sebi_v1.0 12 12
Sphaerobolus_stellatus_v1.0 17 17
Piloderma_croceum_F_1598_v1.0 13 13
Serpula_lacrymans_var._lacrymans_S7.9_ 11 11
Coniophora_puteana 14 13
Hydnomerulius_pinastri_v2.0 14 14
Paxillus_rubicundulus_Ve08.2h10_v1.0 13 13
Pisolithus_microcarpus_441_v1.0 15 15
Pisolithus_tinctorius_Marx_270_v1.0 14 14
Scleroderma_citrinum_Foug_A_v1.0 12 12
Coprinopsis_cinerea_okayama7_130_v3 16 16
Pleurotus_ostreatus_   (Oyster mushroom)   16 16
Amanita_thiersii_Skay4041_v1.0 13 13
Amanita_muscaria_Koide_v1.0   (Fly agaric)   13 13
Galerina_marginata_v1.0 14 14
Hebeloma_cylindrosporum_h7_v2.0 17 17
Laccaria_bicolor_S238N-H82_ 17 17
Agaricus_bisporus_var._bisporus_ 15 14
Schizophyllum_commune_ 16 16
Stereum_hirsutum_FP-91666_SS1__v1.0 12 12
Heterobasidion_annosum_ 13 13
Gloeophyllum_trabeumv1.0 16 15
Punctularia_strigosozonata_v1.0 13 12
Sebacina_vermifera_MAFF_305830_v1.0 20 18
Fomitiporia_mediterranea_v1.0 13 13
Tulasnella_calospora_AL13/4D_v1.0 14 14
Postia_placenta_ 19 19
Wolfiporia_cocos_MD-104_SS10__v1.0 16 15
Fomitopsis_pinicolav1.0 14 14
Fomitopsis_pinicola_FP-58527_SS1_v3.0 14 14
Phanerochaete_chrysosporium_RP-78_2.1 12 12
Dichomitus_squalens 16 15
Trametes_versicolor_v1.0 14 14
Tremella_mesenterica_   (Witches' butter)   13 13
Daldinia_eschscholzii_EC12_v1.0 18 18
Apiospora_montagnei_NRRL_25634_v1.0 16 16
Magnaporthe_poae_ATCC_64411_22 13 13
Magnaporthe_grisea_70-15_ 17 17
Podospora_anserina_ 17 17
Sporotrichum_thermophile_ATCC_42464_ 17 17
Thielavia_terrestris_NRRL_8126_ 17 17
Chaetomium_globosum_CBS_148.51_ 16 16
Neurospora_tetrasperma_ 16 16
Neurospora_discreta_FGSC_8579_ 16 16
Neurospora_crassa_OR74A_ 17 17
Cryphonectria_parasitica_   (Chestnut blight fungus)   17 17
Verticillium_albo-atrum_VaMs.102_ 18 16
Verticillium_dahliae_VdLs.17_ 18 18
Acremonium_alcalophilumv_1.0 16 16
Glomerella_graminicola_22 16 16
Fusarium_graminearum_ 16 16
Nectria_haematococca_mpVI_ 16 16
Fusarium_oxysporum_f._sp._lycopersici_4286_ 16 16
Fusarium_verticillioides_7600_ 15 15
Trichoderma_asperellum_CBS_433.97_v1.0 15 15
Trichoderma_atroviride_ 15 15
Trichoderma_citrinoviride_v1.0 14 14
Trichoderma_reesei_1.2 15 15
Trichoderma_virens_Gv29-8_ 16 16
Trichoderma_longibrachiatum_ATCC_18648_v1.0 14 14
Trichoderma_harzianum_CBS_226.95_v1.0 17 17
Amorphotheca_resinae_v1.0   (Creosote fungus)   16 16
Botrytis_cinerea_B05.10_ 17 17
Sclerotinia_sclerotiorum_ 17 17
Blumeria_graminis_22 15 15
Didymella_exigua_CBS_183.55_v1.0 17 17
Leptosphaeria_maculans_22 17 17
Setosphaeria_turcica_v1.0 17 17
Cochliobolus_miyabeanus_ATCC_44560_v1.0 18 18
Cochliobolus_victoriae_FI3_v1.0 18 18
Cochliobolus_carbonum_26-R-13_v1.0 18 18
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   17 17
Alternaria_brassicicola_ 15 15
Cochliobolus_lunatus_m118_v2.0 18 18
Pyrenophora_teres_f._teres_22 17 17
Pyrenophora_tritici-repentis_ 16 16
Stagonospora_nodorum_ 16 16
Mycosphaerella_graminicola_IPO323_ 15 15
Zasmidium_cellare_ATCC_36951_v1.0 16 16
Dothistroma_septosporum 15 15
Septoria_musiva_v1.0 16 16
Mycosphaerella_fijiensis_CIRAD86_ 16 16
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 15 15
Paracoccidioides_brasiliensis_Pb18_ 16 16
Coccidioides_posadasii_RMSCC_3488_ 16 16
Coccidioides_immitis_RS_ 16 16
Ajellomyces_dermatitidis_SLH14081_ 15 15
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 12 12
Microsporum_canis_CBS_113480_ 16 16
Trichophyton_equinum_CBS_127.97_ 16 16
Trichophyton_verrucosum_HKI_0517_ 15 15
Arthroderma_benhamiae_CBS_112371_ 15 15
Trichophyton_tonsurans_CBS_112818_ 16 16
Trichophyton_rubrum_CBS_118892_ 14 14
Uncinocarpus_reesii_1704_ 16 16
Aspergillus_zonatus_v1.0 16 16
Penicillium_chrysogenum_Wisconsin_54-1255_ 18 18
Penicillium_chrysogenum_v1.0 17 17
Aspergillus_acidus_v1.0 16 16
Aspergillus_fumigatus_Af293 16 16
Aspergillus_brasiliensis_v1.0 17 17
Aspergillus_nidulans_FGSC_A4_ 17 17
Aspergillus_sydowii_v1.0 17 17
Aspergillus_versicolor_v1.0 16 16
Aspergillus_glaucus 16 16
Aspergillus_carbonarius_ITEM_5010_ 16 16
Neosartorya_fischeri_NRRL_181_ 16 16
Aspergillus_terreus_NIH2624_ 15 15
Aspergillus_tubingensis_v1.0 16 16
Aspergillus_wentii_v1.0 16 16
Aspergillus_oryzae_RIB40_ 16 16
Aspergillus_niger_22 17 17
Aspergillus_niger_ATCC_1015_ 9 9
Aspergillus_flavus_NRRL3357_ 16 16
Aspergillus_clavatus_NRRL_1_ 16 16
Penicillium_marneffei_ATCC_18224_ 18 18
Tuber_melanosporum_Mel28_22 15 15
Tuber_melanosporum_Vittad_   (Perigord truffle)   19 19
Hansenula_polymorpha_v2.0 14 14
Dekkera_bruxellensis_CBS_2499_v2.0 14 14
Pichia_membranifaciensv1.0 12 12
Candida_tanzawaensis_NRRL_Y-17324__v1.0 13 13
Candida_dubliniensis_CD36_ 17 17
Candida_tropicalis_MYA-3404_ 15 15
Candida_parapsilosis_ 15 15
Candida_albicans_SC5314 14 14
Lodderomyces_elongisporus_NRRL_YB-4239_ 14 14
Babjeviella_inositovora_NRRL_Y-12698_v1.0 17 17
Pichia_stipitis_CBS_6054_ 16 15
Candida_guilliermondii_ATCC_6260_ 16 16
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 15 14
Debaromyces_hansenii 15 15
Wickerhamomyces_anomalus 16 16
Pichia_pastoris_GS115_ 14 14
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 6 6
Yarrowia_lipolytica_CLIB122 14 14
Candida_lusitaniae_ATCC_42720_ 12 12
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 14 14
Vanderwaltozyma_polyspora_DSM_70294_ 18 17
Candida_glabrata_CBS138 17 16
Kluyveromyces_thermotolerans_CBS_6340 15 15
Lachancea_kluyveri_ 13 13
Kluyveromyces_waltii 17 16
Ashbya_gossypii_ATCC_10895_ 14 14
Zygosaccharomyces_rouxii_ 15 14
Saccharomyces_mikatae_MIT 17 16
Saccharomyces_paradoxus_MIT 15 15
Saccharomyces_cerevisiae_76   (Baker's yeast)   16 15
Saccharomyces_bayanus_MIT 16 15
Kluyveromyces_lactis 11 11
Schizosaccharomyces_cryophilus_OY26_22 18 18
Schizosaccharomyces_octosporus_yFS286_ 18 18
Schizosaccharomyces_japonicus_yFS275_ 18 18
Schizosaccharomyces_pombe   (Fission yeast)   19 19
Catenaria_anguillulae_PL171_v1.0 18 18
Allomyces_macrogynus_ATCC_38327_ 29 28
Spizellomyces_punctatus_DAOM_BR117_ 29 28
Dictyostelium_discoideum 28 28
Dictyostelium_purpureum_ 28 28
Entamoeba_dispar_1.2 32 32
Entamoeba_invadens_1.2 31 31
Entamoeba_histolytica_1 29 29
Selaginella_moellendorffii_ 13 13
Pinus_taeda   (Loblolly pine)   5 4
Picea_abies   (Norway spruce)   7 7
Eucalyptus_grandis_v201   (Rose gum)   14 14
Theobroma_cacao_B97-61/B2_v1   (Cacao)   9 9
Gossypium_raimondii_v221 43 43
Citrus_clementina_v165 22 22
Citrus_sinensis_v154   (Sweet orange)   23 23
Thellungiella_halophila_v173 13 13
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   21 20
Capsella_rubella_v183 17 17
Arabidopsis_lyrata_   (Lyrate rockcress)   12 12
Arabidopsis_thaliana_10   (Thale cress)   15 15
Carica_papaya_   (Papaya)   9 9
Medicago_truncatula_   (Barrel medic)   28 28
Phaseolus_vulgaris_v186   (French bean)   20 20
Glycine_max_v109   (Soybean)   37 37
Cucumis_sativus_v122   (Cucumber)   13 13
Fragaria_vesca_   (Wild strawberry)   14 14
Malus_domestica_v196   (Apple)   22 21
Prunus_persica_v139   (Peach)   13 13
Linum_usitatissimum_v200   (Flax)   23 23
Manihot_esculenta_v147   (Cassava)   16 16
Populus_trichocarpa_v156   (Black cottonwood)   18 18
Vitis_vinifera_   (Wine grape)   12 12
Mimulus_guttatus_v140   (Spotted monkey flower)   13 13
Solanum_lycopersicum_v.2.3   (Tomato)   12 12
Solanum_tuberosum_   (Potato)   24 24
Actinidia_chinensis_Hongyang_ 20 19
Aquilegia_coerulea_v195 27 27
Triticum_urartu_22 9 9
Triticum_aestivum_22   (Bread wheat)   34 34
Aegilops_tauschii_22 9 9
Brachypodium_distachyon_   (Stiff brome)   18 18
Oryza_barthii_22   (African wild rice)   13 13
Oryza_meridionalis_22 19 19
Oryza_glumaepatula_22 16 16
Oryza_glaberrima   (African rice)   9 9
Oryza_punctata_22 16 15
Oryza_nivara_22 18 18
Oryza_brachyantha_22   (Malo sina)   12 12
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   16 16
Oryza_sativa_v193   (Rice)   14 14
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   13 12
Panicum_virgatum_v202   (Switchgrass)   32 32
Setaria_italica_v164   (Foxtail millet)   18 18
Zea_mays_subsp._mays_   (Maize)   33 33
Zea_mays_v181   (Maize)   40 40
Sorghum_bicolor_   (Sorghum)   14 14
Musa_balbisiana   (Balbis banana)   21 20
Musa_acuminata_22   (Wild Malaysian banana)   20 20
Amborella_trichopoda_22 10 10
Physcomitrella_patens 15 15
Coccomyxa_subellipsoidea_sp._C-169_v2 3 3
Asterochloris_sp._Cgr/DA1pho_v1.0 4 4
Chlorella_variabilis_sp._NC64A_ 5 4
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 6 6
Volvox_carteri_v199 7 7
Chlamydomonas_reinhardtii_4.0 5 5
Ostreococcus_sp._RCC809_ 5 5
Ostreococcus_lucimarinus_CCE9901_ 6 6
Ostreococcus_tauri_ 4 4
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 4 4
Micromonas_pusilla_CCMP1545_v3.0 5 5
Cyanidioschyzon_merolae_strain_10D_22 5 5
Cyanidioschyzon_merolae 5 5
Porphyridium_purpureum_02_2012 7 7
Thecamonas_trahens_ATCC_50062_ 29 29
Bigelowiella_natans_CCMP2755_22 26 24
Giardia_lamblia_2.3 2 2
Cyanophora_paradoxa_ 9 9
Leishmania_mexicana_2.4 7 7
Leishmania_major_strain_Friedlin_ 7 7
Leishmania_infantum_JPCM5_2.4 6 6
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 5 5
Trypanosoma_vivax_ 4 4
Trypanosoma_cruzi_strain_CL_Brener 6 6
Trypanosoma_congolense_2.4 3 3
Trypanosoma_brucei_gambiense_v4.1 3 3
Trypanosoma_brucei_TREU927_v4.1 3 3
Ectocarpus_siliculosus 14 14
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 11 11
Pythium_iwayamai_DAOM_BR242034_22 13 11
Pythium_arrhenomanes_ATCC_12531_22 13 13
Pythium_ultimum_v1.7-2 13 12
Pythium_aphanidermatum_DAOM_BR444_22 13 12
Pythium_irregulare_DAOM_BR486_22 16 14
Pythium_vexans_DAOM_BR484_22 13 12
Phytophthora_ramorum_1.1   (Sudden oak death agent)   15 14
Phytophthora_sojae_1.1 16 15
Phytophthora_infestans_T30-4_ 17 16
Phytophthora_capsici_ 14 13
Hyaloperonospora_arabidopsidis_22 9 9
Phaeodactylum_tricornutumCCAP_1055/1 5 4
Fragilariopsis_cylindrus 5 5
Thalassiosira_pseudonana_CCMP1335 4 4
Perkinsus_marinus_ATCC_50983_ 8 7
Paramecium_tetraurelia_ 36 36
Tetrahymena_thermophila_SB210_1_ 15 15
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 3 3
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 2 2
Toxoplasma_gondii_VEG 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 9 9
Naegleria_gruberi_ 14 14
Trichomonas_vaginalis_ 38 38
Guillardia_theta_CCMP2712_v1.0_ 12 12
Emiliania_huxleyi_CCMP1516_ 5 5
Trichodesmium_erythraeum_IMS101 1 1
Mycoplasma_genitalium_G37 1 1
Arthrobacter_arilaitensis_Re117 1 1
Gardnerella_vaginalis_409-05 1 1
Bifidobacterium_adolescentis_ATCC_15703 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Clostridium_acetobutylicum_ATCC_824 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 2
Flexibacter_litoralis_DSM_6794 1 1
Paludibacter_propionicigenes_WB4 1 1
Prevotella_intermedia_17 1 1
Muricauda_ruestringensis_DSM_13258 1 1
Spirochaeta_caldaria_DSM_7334 1 1
Thermotoga_thermarum_DSM_5069 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Hippea_maritima_DSM_10411 1 1
Babela_massiliensis 1 1
Myxococcus_xanthus_DK_1622 1 1
Phenylobacterium_zucineum_HLK1 1 1
Sinorhizobium_medicae_WSM419 1 1
Hyphomicrobium_denitrificans_ATCC_51888 1 1
Legionella_pneumophila_str._Corby 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 2 2
Pyrobaculum_sp._1860 1 1
Methanosaeta_concilii_GP6 1 1
Halorhabdus_utahensis_DSM_12940 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   130 130
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   50 50
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   32 32
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   29 28
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   45 45
Cryptococcus_neoformans_var._grubii_H99_ 12 12
Cryptococcus_neoformans_B-3501A_ 14 13
Cryptococcus_neoformans_JEC21_ 14 13
Paracoccidioides_brasiliensis_Pb01_ 16 16
Paracoccidioides_brasiliensis_Pb03_ 15 15
Coccidioides_posadasii_str._Silveira_ 16 16
Coccidioides_immitis_RMSCC_3703_ 15 15
Coccidioides_immitis_RMSCC_2394_ 16 16
Coccidioides_immitis_H538.4_ 17 17
Ajellomyces_dermatitidis_ER-3_ 14 14
Histoplasma_capsulatum_H143 14 14
Histoplasma_capsulatum_H88 15 15
Histoplasma_capsulatum_G186AR 15 15
Aspergillus_fumigatus_A1163_ 16 16
Candida_albicans_WO-1_ 14 14
Saccharomyces_cerevisiae_UC5 12 11
Saccharomyces_cerevisiae_PW5 14 13
Saccharomyces_cerevisiae_FL100 10 9
Saccharomyces_cerevisiae_CLIB324 6 5
Saccharomyces_cerevisiae_CBS7960 12 11
Saccharomyces_cerevisiae_YJM269 13 12
Saccharomyces_cerevisiae_T7 16 15
Saccharomyces_cerevisiae_FostersB 12 12
Saccharomyces_cerevisiae_FostersO 11 11
Saccharomyces_cerevisiae_VL3 13 13
Saccharomyces_cerevisiae_Vin13 12 11
Saccharomyces_cerevisiae_LalvinQA23 13 13
Saccharomyces_cerevisiae_AWRI796 12 11
Saccharomyces_cerevisiae_Sigma1278b 15 14
Saccharomyces_cerevisiae_W303 16 15
Saccharomyces_cerevisiae_JAY291 16 15
Saccharomyces_cerevisiae_AWRI1631 10 9
Saccharomyces_cerevisiae_YPS163 3 3
Saccharomyces_cerevisiae_M22 4 4
Saccharomyces_cerevisiae_T73 8 8
Saccharomyces_cerevisiae_CLIB215 14 13
Saccharomyces_cerevisiae_Y10 7 6
Saccharomyces_cerevisiae_YJM789_ 16 15
Saccharomyces_cerevisiae_YJM789 16 15
Saccharomyces_cerevisiae_RM11-1a 16 15
Saccharomyces_cerevisiae_RM11-1a_ 16 15
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   16 15
Schizosaccharomyces_pombe_972h-_ 19 19
Batrachochytrium_dendrobatidis_JEL423_ 19 19
Batrachochytrium_dendrobatidis_JAM81_ 18 18
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   9 9
Hordeum_vulgare_22   (Domesticated barley)   25 25
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   14 14
Trypanosoma_brucei_Lister_427_v4.1 3 3
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Cyanothece_sp._PCC_7822 1 1
Mycoplasma_genitalium_M2321 1 1
Mycoplasma_genitalium_M2288 1 1
Mycoplasma_genitalium_M6282 1 1
Mycoplasma_genitalium_M6320 1 1
Clostridium_perfringens_SM101 1 1
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Lactococcus_lactis_subsp._lactis_CV56 1 1
Bacillus_licheniformis_9945A 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 2
Helicobacter_pylori_Gambia94/24 1 1
Bradyrhizobium_sp._BTAi1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   72 70
Pan_troglodytes_69_2.1.4   (Chimpanzee)   66 66
Gorilla_gorilla_69_3.1   (Western gorilla)   66 65
Pongo_abelii_69_2   (Sumatran orangutan)   66 66
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   66 65
Macaca_mulatta_69_1   (Rhesus monkey)   66 66
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   71 70
Otolemur_garnettii_69_3   (Small-eared galago)   65 65
Microcebus_murinus_69_1   (Gray mouse lemur)   67 60
Rattus_norvegicus_69_3.4   (Norway rat)   71 71
Mus_musculus_69_38   (House mouse)   70 70
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   67 63
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   66 66
Cavia_porcellus_69_3   (Domestic guinea pig)   68 68
Oryctolagus_cuniculus_69_2   (Rabbit)   64 63
Ochotona_princeps_69   (American pika)   70 63
Tupaia_belangeri_69   (Northern tree shrew)   69 60
Sus_scrofa_69_10.2   (Pig)   69 69
Bos_taurus_69_3.1   (Cattle)   69 69
Vicugna_pacos_69_1   (Alpaca)   41 38
Tursiops_truncatus_69_1   (Bottlenose dolphin)   66 62
Mustela_putorius_furo_69_1.0   (Domestic ferret)   68 68
Ailuropoda_melanoleuca_69_1   (Giant panda)   73 72
Canis_familiaris_69_3.1   (Dog)   72 71
Felis_catus_69   (Domestic cat)   66 57
Equus_caballus_69_2   (Horse)   72 69
Myotis_lucifugus_69_2.0   (Little brown bat)   66 65
Pteropus_vampyrus_69_1   (Large flying fox)   66 66
Sorex_araneus_69_1   (European shrew)   54 47
Erinaceus_europaeus_69   (Western European hedgehog)   61 55
Procavia_capensis_69_1   (Cape rock hyrax)   80 65
Loxodonta_africana_69_3   (African savanna elephant)   73 73
Echinops_telfairi_69   (Small Madagascar hedgehog)   65 58
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   51 45
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   42 38
Macropus_eugenii_69_1.0   (Tammar wallaby)   75 61
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   70 69
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   67 67
Ornithorhynchus_anatinus_69_5   (Platypus)   70 68
Petromyzon_marinus_69_7.0   (Sea lamprey)   37 37
Meleagris_gallopavo_69_2   (Turkey)   58 58
Gallus_gallus_69_2   (Chicken)   63 63
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   63 62
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   65 65
Anolis_carolinensis_69_2.0   (Green anole)   66 66
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   71 71
Latimeria_chalumnae_69_1   (Coelacanth)   70 69
Gadus_morhua_69_1   (Atlantic cod)   96 94
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   101 100
Takifugu_rubripes_69_4   (Torafugu)   102 102
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   93 93
Oryzias_latipes_69_1   (Japanese medaka)   94 94
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   103 103
Oreochromis_niloticus_69_1.0   (Nile tilapia)   104 104
Danio_rerio_69_9   (Zebrafish)   110 110
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   30 29
Ciona_intestinalis_69   (Vase tunicate)   32 32
Drosophila_melanogaster_69_5   (Fruit fly)   20 20
Caenorhabditis_elegans_69_215   (Roundworm)   28 28
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   16 15
Arabidopsis_thaliana_10   (Thale cress)   11 11

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   378 375
Homo_sapiens__(NCBI_version)   (Human)   127 126
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   69 69
Heliconius_numata__(Incomplete) 7 7
Loa_loa_v3.3_(Request)   (Eye worm)   26 26
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   31 31
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   27 27
Moniliophthora_perniciosa_FA553__(Genome_survey) 9 9
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 11 10
Malus_x_domestica_(Duplicate)   (Apple)   22 21
Ricinus_communis__(Early_assembly)   (Castor bean)   11 11
Nicotiana_benthamiana_0.4.4_(Early_draft) 23 22
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   12 12
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   12 12
Phoenix_dactylifera__(Early_draft)   (Date palm)   11 11
NCBI_plasmid_sequences_(Plasmids) 6 6
TargetDB__(Targets) 168 168
Protein_Data_Bank_(all_PDB_sequenc) 174 164
UniProt__viral_sequences_(Viral) 5 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 240 240
Protozoadb_2010_08_(Protozoadb) 262 262
STRING_v9.0.5_(STRING) 3404 3367
Uniprot_2018_03_genome 43150 42731
NCBI_viral_sequences_(Viral) 4 4
NCBI_2017_08_genome 60001 59741
PDB_chains_(SCOP_1.75)_(PDB) 12 12

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