SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for RbcX-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a RbcX-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Selaginella_moellendorffii_ 3 3
Eucalyptus_grandis_v201   (Rose gum)   6 6
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 7 7
Citrus_clementina_v165 3 3
Citrus_sinensis_v154   (Sweet orange)   6 6
Thellungiella_halophila_v173 3 3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   4 4
Capsella_rubella_v183 2 2
Arabidopsis_lyrata_   (Lyrate rockcress)   2 2
Arabidopsis_thaliana_10   (Thale cress)   2 2
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   3 3
Phaseolus_vulgaris_v186   (French bean)   3 3
Glycine_max_v109   (Soybean)   6 6
Cucumis_sativus_v122   (Cucumber)   10 10
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   2 2
Prunus_persica_v139   (Peach)   2 2
Linum_usitatissimum_v200   (Flax)   6 6
Manihot_esculenta_v147   (Cassava)   4 4
Populus_trichocarpa_v156   (Black cottonwood)   3 3
Vitis_vinifera_   (Wine grape)   3 3
Mimulus_guttatus_v140   (Spotted monkey flower)   3 3
Solanum_lycopersicum_v.2.3   (Tomato)   3 3
Solanum_tuberosum_   (Potato)   5 5
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 3 3
Triticum_urartu_22 3 3
Triticum_aestivum_22   (Bread wheat)   9 9
Aegilops_tauschii_22 3 2
Brachypodium_distachyon_   (Stiff brome)   5 5
Oryza_barthii_22   (African wild rice)   3 3
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 3 3
Oryza_glaberrima   (African rice)   3 3
Oryza_punctata_22 2 2
Oryza_nivara_22 3 3
Oryza_brachyantha_22   (Malo sina)   3 3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   4 4
Oryza_sativa_v193   (Rice)   4 4
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2 2
Panicum_virgatum_v202   (Switchgrass)   7 7
Setaria_italica_v164   (Foxtail millet)   3 3
Zea_mays_subsp._mays_   (Maize)   5 5
Zea_mays_v181   (Maize)   6 6
Sorghum_bicolor_   (Sorghum)   3 3
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   3 3
Amborella_trichopoda_22 2 2
Physcomitrella_patens 3 3
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 5 5
Chlorella_vulgaris_ 3 3
Volvox_carteri_f._nagariensis_ 4 4
Volvox_carteri_v199 3 3
Chlamydomonas_reinhardtii_4.0 3 3
Ostreococcus_sp._RCC809_ 8 8
Ostreococcus_lucimarinus_CCE9901_ 8 8
Ostreococcus_tauri_ 5 5
Bathycoccus_prasinos_ 7 7
Micromonas_sp._RCC299_ 5 5
Micromonas_pusilla_CCMP1545_v3.0 7 6
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Cyanophora_paradoxa_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 2 1
Leptolyngbya_sp._PCC_7376 1 1
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 1 1
Synechocystis_sp._PCC_6803 1 1
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_7502 1 1
Synechococcus_sp._PCC_6312 1 1
Synechococcus_elongatus_PCC_7942 1 1
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 1 1
Geitlerinema_sp._PCC_7407 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeocapsa_sp._PCC_7428 1 1
Halothece_sp._PCC_7418 1 1
Microcystis_aeruginosa_NIES-843 1 1
Gloeobacter_violaceus_PCC_7421 1 1
Rivularia_sp._PCC_7116 1 1
Calothrix_sp._PCC_7507 1 1
Anabaena_variabilis_ATCC_29413 1 1
'Nostoc_azollae'_0708 1 1
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7120 1 1
Nostoc_sp._PCC_7524 1 1
Anabaena_sp._90 1 1

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   7 7
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3 3
Chroococcidiopsis_thermalis_PCC_7203 1 1
Chamaesiphon_minutus_PCC_6605 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Dactylococcopsis_salina_PCC_8305 1 1
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Synechococcus_sp._PCC_7002 1 1
Synechococcus_elongatus_PCC_6301 1 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Oscillatoria_acuminata_PCC_6304 1 1
Arthrospira_platensis_NIES-39 1 1
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Stanieria_cyanosphaera_PCC_7437 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Cylindrospermum_stagnale_PCC_7417 1 1
Anabaena_cylindrica_PCC_7122 1 1

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Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   2 2

Others
Genome     Number   Proteins
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   2 2
Ricinus_communis__(Early_assembly)   (Castor bean)   2 2
Nicotiana_benthamiana_0.4.4_(Early_draft) 5 5
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   3 3
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3 3
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 2
STRING_v9.0.5_(STRING) 61 61
Protein_Data_Bank_(all_PDB_sequenc) 87 87
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 156 156
PDB_chains_(SCOP_1.75)_(PDB) 6 6
NCBI_2017_08_genome 583 580
Uniprot_2018_03_genome 2125 2120
TargetDB__(Targets) 4 4
NCBI_viral_sequences_(Viral) 1 1

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