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Domain combinations for YdgH-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YdgH-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Rhodnius_prolixus_22 2 2
Thelohanellus_kitauei 2 1
Chitinophaga_pinensis_DSM_2588 1 1
Spirosoma_linguale_DSM_74 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Photorhabdus_asymbiotica 4 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 4 2
Xenorhabdus_bovienii_SS-2004 4 2
Xenorhabdus_nematophila_ATCC_19061 4 2
Providencia_stuartii_MRSN_2154 6 4
Proteus_mirabilis_HI4320 4 2
Edwardsiella_ictaluri_93-146 8 6
Edwardsiella_tarda_EIB202 8 6
Rahnella_sp._Y9602 16 14
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 15 13
Yersinia_pseudotuberculosis_IP_31758 7 5
Yersinia_pestis_Pestoides_F 7 5
Yersinia_enterocolitica_subsp._enterocolitica_8081 11 9
Serratia_sp._AS12 15 13
Serratia_sp._ATCC_39006 6 4
Serratia_plymuthica_AS9 15 13
Serratia_proteamaculans_568 14 12
Dickeya_dadantii_Ech703 10 8
Dickeya_zeae_Ech1591 10 8
Pectobacterium_wasabiae_WPP163 6 4
Pectobacterium_sp._SCC3193 6 4
Pectobacterium_atrosepticum_SCRI1043 7 5
Pectobacterium_carotovorum_subsp._carotovorum_PC1 7 5
Sodalis_glossinidius_str._'morsitans' 5 3
Pantoea_sp._At-9b 29 27
Pantoea_vagans_C9-1 13 11
Pantoea_ananatis_LMG_20103 13 11
Erwinia_tasmaniensis_Et1/99 8 6
Erwinia_sp._Ejp617 8 6
Erwinia_billingiae_Eb661 15 13
Erwinia_pyrifoliae_Ep1/96 8 6
Erwinia_amylovora_ATCC_49946 8 6
Escherichia_blattae_DSM_4481 11 9
Cronobacter_turicensis_z3032 11 9
Cronobacter_sakazakii_ES15 11 9
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 3 1
Enterobacteriaceae_bacterium_strain_FGI_57 16 14
Shigella_sonnei_Ss046 11 9
Shigella_flexneri_5_str._8401 10 8
Shigella_dysenteriae_Sd197 9 7
Shigella_boydii_CDC_3083-94 9 7
Salmonella_bongori_NCTC_12419 14 12
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 13 11
Klebsiella_oxytoca_E718 15 13
Klebsiella_variicola_At-22 19 17
Klebsiella_pneumoniae_NTUH-K2044 19 17
Enterobacter_aerogenes_KCTC_2190 18 16
Escherichia_fergusonii_ATCC_35469 10 8
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 12 10
Enterobacter_sp._R4-368 14 12
Enterobacter_sp._638 14 12
Enterobacter_asburiae_LF7a 17 15
Enterobacter_cloacae_subsp._dissolvens_SDM 15 13
Citrobacter_rodentium_ICC168 11 9
Citrobacter_koseri_ATCC_BAA-895 12 10

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Strains
Genome     Number   Proteins
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Vibrio_vulnificus_YJ016 1 1
Proteus_mirabilis_BB2000 4 2
Morganella_morganii_subsp._morganii_KT 5 3
Edwardsiella_tarda_C07-087 8 6
Edwardsiella_tarda_FL6-60 8 6
Rahnella_aquatilis_HX2 16 14
Yersinia_pseudotuberculosis_PB1/+ 7 5
Yersinia_pseudotuberculosis_YPIII 7 5
Yersinia_pseudotuberculosis_IP_32953 7 5
Yersinia_pestis_biovar_Microtus_str._91001 7 5
Yersinia_pestis_A1122 7 5
Yersinia_pestis_Z176003 4 2
Yersinia_pestis_D182038 3 1
Yersinia_pestis_D106004 4 2
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 7 5
Yersinia_pestis_Nepal516 7 5
Yersinia_pestis_Antiqua 7 5
Yersinia_pestis_Angola 7 5
Yersinia_pestis_CO92 7 5
Yersinia_pestis_KIM10+ 7 5
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 11 9
Yersinia_enterocolitica_subsp._palearctica_Y11 11 9
Serratia_sp._AS13 15 13
Serratia_plymuthica_S13 15 13
Serratia_plymuthica_4Rx13 14 12
Serratia_marcescens_FGI94 11 9
Serratia_marcescens_WW4 16 14
Serratia_liquefaciens_ATCC_27592 18 16
Dickeya_dadantii_Ech586 12 10
Dickeya_dadantii_3937 11 9
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 6 4
Pantoea_ananatis_LMG_5342 13 11
Pantoea_ananatis_PA13 13 11
Pantoea_ananatis_AJ13355 8 6
Erwinia_pyrifoliae_DSM_12163 8 6
Erwinia_amylovora_CFBP1430 7 5
Cronobacter_sakazakii_CMCC_45402 11 9
Cronobacter_sakazakii_SP291 11 9
Cronobacter_sakazakii_ATCC_BAA-894 11 9
Raoultella_ornithinolytica_B6 17 15
Shigella_sonnei_53G 11 9
Shigella_flexneri_2002017 10 8
Shigella_flexneri_2a_str._2457T 10 8
Shigella_flexneri_2a_str._301 10 8
Shigella_dysenteriae_1617 10 8
Shigella_boydii_Sb227 9 7
Salmonella_bongori_N268-08 14 12
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 13 11
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 13 11
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 13 11
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 13 11
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 13 11
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 13 11
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 13 11
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 13 11
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 13 11
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 12 10
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 13 11
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 13 11
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 13 11
Salmonella_enterica_serovar_Bovismorbificans_genomics 13 11
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 13 11
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 12 10
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 13 11
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 14 12
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 13 11
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 13 11
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 13 11
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 13 11
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 13 11
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 13 11
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 12 10
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 13 11
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 13 11
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 13 11
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 13 11
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 13 11
Klebsiella_oxytoca_KCTC_1686 15 13
Klebsiella_pneumoniae_JM45 16 14
Klebsiella_pneumoniae_CG43 17 15
Klebsiella_pneumoniae_KCTC_2242 19 17
Klebsiella_pneumoniae_342 19 17
Klebsiella_pneumoniae_subsp._pneumoniae_1084 17 15
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 17 15
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 15 13
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 17 15
Enterobacter_aerogenes_EA1509E 18 16
Escherichia_coli_E24377A 12 10
Escherichia_coli_E._coli_PMV-1 11 9
Escherichia_coli_JJ1886 13 11
Escherichia_coli_LY180 12 10
Escherichia_coli_APEC_O78 12 10
Escherichia_coli_O7:K1_str._CE10 13 11
Escherichia_coli_O104:H4_str._2009EL-2050 12 10
Escherichia_coli_O104:H4_str._2009EL-2071 12 10
Escherichia_coli_O104:H4_str._2011C-3493 12 10
Escherichia_coli_NA114 13 11
Escherichia_coli_P12b 6 4
Escherichia_coli_str._'clone_D_i2' 13 11
Escherichia_coli_str._'clone_D_i14' 13 11
Escherichia_coli_UM146 12 10
Escherichia_coli_042 12 10
Escherichia_coli_Xuzhou21 13 11
Escherichia_coli_IHE3034 12 10
Escherichia_coli_UMNK88 12 10
Escherichia_coli_O83:H1_str._NRG_857C 12 10
Escherichia_coli_ABU_83972 12 10
Escherichia_coli_KO11FL 12 10
Escherichia_coli_KO11FL 12 10
Escherichia_coli_LF82 12 10
Escherichia_coli_ED1a 12 10
Escherichia_coli_IAI39 13 11
Escherichia_coli_UMN026 15 13
Escherichia_coli_55989 12 10
Escherichia_coli_S88 12 10
Escherichia_coli_IAI1 12 10
Escherichia_coli_W 12 10
Escherichia_coli_W 12 10
Escherichia_coli_DH1 12 10
Escherichia_coli_DH1 12 10
Escherichia_coli_ATCC_8739 11 9
Escherichia_coli_BL21(DE3) 12 10
Escherichia_coli_BL21(DE3) 12 10
Escherichia_coli_SMS-3-5 13 11
Escherichia_coli_SE15 12 10
Escherichia_coli_SE11 12 10
Escherichia_coli_APEC_O1 10 8
Escherichia_coli_O103:H2_str._12009 12 10
Escherichia_coli_UTI89 12 10
Escherichia_coli_536 13 11
Escherichia_coli_HS 11 9
Escherichia_coli_ETEC_H10407 12 10
Escherichia_coli_O55:H7_str._RM12579 13 11
Escherichia_coli_O55:H7_str._CB9615 13 11
Escherichia_coli_O26:H11_str._11368 12 10
Escherichia_coli_CFT073 13 11
Escherichia_coli_O111:H-_str._11128 12 10
Escherichia_coli_O127:H6_str._E2348/69 12 10
Escherichia_coli_O157:H7_str._TW14359 13 11
Escherichia_coli_O157:H7_str._EC4115 13 11
Escherichia_coli_O157:H7_str._Sakai 13 11
Escherichia_coli_O157:H7_str._EDL933 13 11
Escherichia_coli_str._K-12_substr._MDS42 11 9
Escherichia_coli_BW2952 10 8
Escherichia_coli_str._K-12_substr._MG1655 12 10
Escherichia_coli_str._K-12_substr._W3110 12 10
Escherichia_coli_str._K-12_substr._DH10B 11 9
Escherichia_coli_B_str._REL606 12 10
Enterobacter_cloacae_SCF1 17 15
Enterobacter_cloacae_EcWSU1 13 11
Enterobacter_cloacae_subsp._cloacae_ENHKU01 14 12
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 10 8
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 14 12

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 31 31
NCBI_2017_08_genome 281025 238056
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 21 21
TargetDB__(Targets) 92 74
PDB_chains_(SCOP_1.75)_(PDB) 2 2
NCBI_viral_sequences_(Viral) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 9 9
STRING_v9.0.5_(STRING) 943 767
Uniprot_2018_03_genome 11558 9555

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