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Domain combinations for SWIB/MDM2 domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SWIB/MDM2 domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   54 48
Pan_troglodytes_76_2.1.4   (Chimpanzee)   7 6
Gorilla_gorilla_76_3.1   (Western gorilla)   9 8
Pongo_abelii_76_2   (Sumatran orangutan)   7 6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   8 7
Papio_anubis_76   (Olive baboon)   7 6
Macaca_mulatta_76_1   (Rhesus monkey)   20 17
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   33 29
Otolemur_garnettii_76_3   (Small-eared galago)   10 8
Microcebus_murinus_76_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_76_5.0   (Norway rat)   7 6
Mus_musculus_76_38   (House mouse)   22 20
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   7 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   8 6
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   8 7
Cavia_porcellus_76_3   (Domestic guinea pig)   7 6
Oryctolagus_cuniculus_76_2   (Rabbit)   10 8
Ochotona_princeps_76   (American pika)   7 6
Tupaia_belangeri_76   (Northern tree shrew)   4 4
Sus_scrofa_76_10.2   (Pig)   7 6
Bos_taurus_76_3.1   (Cattle)   7 6
Ovis_aries_76_3.1   (Sheep)   12 10
Vicugna_pacos_76_1   (Alpaca)   6 5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7 6
Mustela_putorius_furo_76_1.0   (Domestic ferret)   8 7
Ailuropoda_melanoleuca_76_1   (Giant panda)   7 6
Canis_familiaris_76_3.1   (Dog)   9 8
Felis_catus_76_6.2   (Domestic cat)   7 6
Equus_caballus_76_2   (Horse)   8 7
Myotis_lucifugus_76_2.0   (Little brown bat)   8 7
Pteropus_vampyrus_76_1   (Large flying fox)   7 6
Sorex_araneus_76_1   (European shrew)   6 5
Erinaceus_europaeus_76   (Western European hedgehog)   6 5
Procavia_capensis_76_1   (Cape rock hyrax)   6 5
Loxodonta_africana_76_3   (African savanna elephant)   10 9
Echinops_telfairi_76   (Small Madagascar hedgehog)   7 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   16 13
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6 5
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 5
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11 9
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7 6
Ornithorhynchus_anatinus_76_5   (Platypus)   5 4
Saccoglossus_kowalevskii_v3.0 8 8
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   10 8
Gallus_gallus_76_4   (Chicken)   7 6
Anas_platyrhynchos_76_1.0   (Mallard)   7 6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   7 6
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   11 9
Anolis_carolinensis_76_2.0   (Green anole)   6 5
Xenopus_laevis_   (African clawed frog)   25 22
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   9 7
Latimeria_chalumnae_76_1   (Coelacanth)   10 9
Lepisosteus_oculatus_76   (Spotted gar)   9 8
Gadus_morhua_76_1   (Atlantic cod)   6 6
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   7 7
Takifugu_rubripes_76_4   (Torafugu)   29 24
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   11 9
Oryzias_latipes_76_1   (Japanese medaka)   9 8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   7 6
Poecilia_formosa_76   (Amazon molly)   7 6
Oreochromis_niloticus_76_1.0   (Nile tilapia)   8 7
Astyanax_mexicanus_76   (Mexican tetra)   7 7
Danio_rerio_76_9   (Zebrafish)   13 13
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_76   (Vase tunicate)   3 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 8 8
Octopus_bimaculoides_280 4 4
Crassostrea_gigas_22   (Pacific oyster)   4 4
Lottia_gigantea_   (Owl limpet)   5 5
Helobdella_robusta_ 2 2
Capitella_sp._I_ 4 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   3 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8 8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 4 4
Drosophila_willistoni_1.3 3 3
Drosophila_pseudoobscura_2.13 3 3
Drosophila_persimilis_1.3 3 3
Drosophila_suzukii 3 3
Drosophila_yakuba_1.3 3 3
Drosophila_simulans_1.3 3 3
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   3 3
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 3 3
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 3 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 5
Anopheles_darlingi_22   (American malaria mosquito)   4 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   4 4
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   3 3
Strigamia_maritima_22 5 5
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   2 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 3 3
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   4 4
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 5 5
Echinococcus_granulosus_ 3 3
Taenia_solium_   (Pork tapeworm)   2 2
Schistosoma_mansoni_ 4 4
Mnemiopsis_leidyi   (Sea walnut)   4 3
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 4
Hydra_vulgaris 2 2
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 3 2
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 4 3
Conidiobolus_coronatus_NRRL28638_v1.0 2 2
Mortierella_verticillata_NRRL_6337_ 3 3
Phycomyces_blakesleeanus_ 3 3
Rhizopus_oryzae_RA_99-880_ 7 6
Mucor_circinelloides_ 6 6
Rhizomucor_miehei_CAU432_ 4 4
Malassezia_globosa_CBS_7966_ 4 4
Sporisorium_reilianum_22 2 2
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2 2
Melampsora_laricis-populina_ 3 3
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 4 4
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 3 3
Piloderma_croceum_F_1598_v1.0 3 3
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 3 3
Hydnomerulius_pinastri_v2.0 2 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 2
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 3 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   4 4
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 4 4
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 2 2
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 2 2
Punctularia_strigosozonata_v1.0 4 4
Sebacina_vermifera_MAFF_305830_v1.0 3 3
Fomitiporia_mediterranea_v1.0 3 3
Tulasnella_calospora_AL13/4D_v1.0 4 4
Postia_placenta_ 2 2
Wolfiporia_cocos_MD-104_SS10__v1.0 3 3
Fomitopsis_pinicolav1.0 2 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2 2
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 3 3
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 2 2
Magnaporthe_poae_ATCC_64411_22 3 3
Magnaporthe_grisea_70-15_ 2 2
Podospora_anserina_ 2 2
Sporotrichum_thermophile_ATCC_42464_ 2 2
Thielavia_terrestris_NRRL_8126_ 2 2
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 2 2
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 2 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 2 2
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 2 2
Fusarium_graminearum_ 2 2
Nectria_haematococca_mpVI_ 2 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 2 2
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 2 2
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 2 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 2 2
Blumeria_graminis_22 2 2
Didymella_exigua_CBS_183.55_v1.0 3 3
Leptosphaeria_maculans_22 3 3
Setosphaeria_turcica_v1.0 3 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 3 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 3
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 3 3
Pyrenophora_tritici-repentis_ 3 3
Stagonospora_nodorum_ 3 3
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Dothistroma_septosporum 3 3
Septoria_musiva_v1.0 3 3
Mycosphaerella_fijiensis_CIRAD86_ 4 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 3
Paracoccidioides_brasiliensis_Pb18_ 2 2
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 2 2
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Microsporum_canis_CBS_113480_ 2 2
Trichophyton_equinum_CBS_127.97_ 2 2
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 2 2
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 2 2
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 2
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 3 3
Aspergillus_nidulans_FGSC_A4_ 2 2
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 2 2
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 2 2
Aspergillus_tubingensis_v1.0 3 3
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 2 2
Aspergillus_niger_22 3 3
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 2 2
Penicillium_marneffei_ATCC_18224_ 2 2
Tuber_melanosporum_Mel28_22 3 3
Tuber_melanosporum_Vittad_   (Perigord truffle)   3 3
Hansenula_polymorpha_v2.0 3 3
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 3 3
Candida_tropicalis_MYA-3404_ 2 2
Candida_parapsilosis_ 3 3
Candida_albicans_SC5314 2 2
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 3 3
Candida_guilliermondii_ATCC_6260_ 3 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 3 3
Wickerhamomyces_anomalus 4 4
Pichia_pastoris_GS115_ 4 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 2 2
Candida_lusitaniae_ATCC_42720_ 3 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 3
Vanderwaltozyma_polyspora_DSM_70294_ 4 4
Candida_glabrata_CBS138 5 5
Kluyveromyces_thermotolerans_CBS_6340 3 3
Lachancea_kluyveri_ 3 3
Kluyveromyces_waltii 3 3
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 3 3
Saccharomyces_mikatae_MIT 5 5
Saccharomyces_paradoxus_MIT 5 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   5 5
Saccharomyces_bayanus_MIT 5 5
Kluyveromyces_lactis 3 3
Schizosaccharomyces_cryophilus_OY26_22 2 2
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   2 2
Catenaria_anguillulae_PL171_v1.0 5 5
Allomyces_macrogynus_ATCC_38327_ 7 5
Spizellomyces_punctatus_DAOM_BR117_ 4 3
Dictyostelium_discoideum 3 3
Dictyostelium_purpureum_ 2 2
Selaginella_moellendorffii_ 19 14
Pinus_taeda   (Loblolly pine)   6 6
Picea_abies   (Norway spruce)   6 6
Eucalyptus_grandis_v201   (Rose gum)   27 22
Theobroma_cacao_B97-61/B2_v1   (Cacao)   21 17
Gossypium_raimondii_v221 81 57
Citrus_clementina_v165 25 21
Citrus_sinensis_v154   (Sweet orange)   40 30
Thellungiella_halophila_v173 23 20
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   26 21
Capsella_rubella_v183 23 20
Arabidopsis_lyrata_   (Lyrate rockcress)   25 20
Arabidopsis_thaliana_10   (Thale cress)   27 21
Carica_papaya_   (Papaya)   15 12
Medicago_truncatula_   (Barrel medic)   29 24
Phaseolus_vulgaris_v186   (French bean)   29 25
Glycine_max_v109   (Soybean)   42 36
Cucumis_sativus_v122   (Cucumber)   26 22
Fragaria_vesca_   (Wild strawberry)   21 18
Malus_domestica_v196   (Apple)   40 31
Prunus_persica_v139   (Peach)   18 15
Linum_usitatissimum_v200   (Flax)   27 23
Manihot_esculenta_v147   (Cassava)   28 24
Populus_trichocarpa_v156   (Black cottonwood)   31 26
Vitis_vinifera_   (Wine grape)   21 17
Mimulus_guttatus_v140   (Spotted monkey flower)   25 21
Solanum_lycopersicum_v.2.3   (Tomato)   19 16
Solanum_tuberosum_   (Potato)   29 25
Actinidia_chinensis_Hongyang_ 34 27
Aquilegia_coerulea_v195 25 20
Triticum_urartu_22 16 13
Triticum_aestivum_22   (Bread wheat)   46 39
Aegilops_tauschii_22 15 12
Brachypodium_distachyon_   (Stiff brome)   23 19
Oryza_barthii_22   (African wild rice)   19 17
Oryza_meridionalis_22 21 18
Oryza_glumaepatula_22 25 22
Oryza_glaberrima   (African rice)   17 13
Oryza_punctata_22 28 23
Oryza_nivara_22 25 21
Oryza_brachyantha_22   (Malo sina)   17 14
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   16 13
Oryza_sativa_v193   (Rice)   16 13
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   27 23
Panicum_virgatum_v202   (Switchgrass)   30 24
Setaria_italica_v164   (Foxtail millet)   16 13
Zea_mays_subsp._mays_   (Maize)   36 28
Zea_mays_v181   (Maize)   39 32
Sorghum_bicolor_   (Sorghum)   16 13
Musa_balbisiana   (Balbis banana)   23 20
Musa_acuminata_22   (Wild Malaysian banana)   27 24
Amborella_trichopoda_22 11 9
Physcomitrella_patens 10 8
Coccomyxa_subellipsoidea_sp._C-169_v2 3 2
Asterochloris_sp._Cgr/DA1pho_v1.0 4 3
Chlorella_variabilis_sp._NC64A_ 3 2
Chlorella_vulgaris_ 3 2
Volvox_carteri_f._nagariensis_ 3 2
Volvox_carteri_v199 3 2
Chlamydomonas_reinhardtii_4.0 3 2
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 2 2
Cyanidioschyzon_merolae_strain_10D_22 3 2
Cyanidioschyzon_merolae 3 2
Porphyridium_purpureum_02_2012 9 5
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 4 4
Cyanophora_paradoxa_ 3 3
Ectocarpus_siliculosus 4 3
Aureococcus_anophagefferens_ 3 2
Albugo_laibachii_22 35 34
Pythium_iwayamai_DAOM_BR242034_22 5 4
Pythium_arrhenomanes_ATCC_12531_22 3 2
Pythium_ultimum_v1.7-2 5 4
Pythium_aphanidermatum_DAOM_BR444_22 5 4
Pythium_irregulare_DAOM_BR486_22 5 4
Pythium_vexans_DAOM_BR484_22 4 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 4
Phytophthora_sojae_1.1 5 4
Phytophthora_infestans_T30-4_ 5 4
Phytophthora_capsici_ 5 4
Hyaloperonospora_arabidopsidis_22 5 3
Phaeodactylum_tricornutumCCAP_1055/1 3 2
Fragilariopsis_cylindrus 3 3
Thalassiosira_pseudonana_CCMP1335 3 2
Perkinsus_marinus_ATCC_50983_ 4 4
Paramecium_tetraurelia_ 2 2
Tetrahymena_thermophila_SB210_1_ 1 1
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 2 2
Cryptosporidium_parvum_Iowa_II 2 2
Neospora_caninum 3 3
Toxoplasma_gondii_VEG 3 3
Toxoplasma_gondii_ME49 3 3
Toxoplasma_gondii_GT1 3 3
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 3 3
Plasmodium_knowlesi_strain_H_ 3 3
Plasmodium_yoelii_ssp._yoelii_1_ 3 3
Plasmodium_chabaudi_ 3 3
Plasmodium_berghei_ANKA_ 3 3
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 3 3
Emiliania_huxleyi_CCMP1516_ 1 1
Gemmatimonas_aurantiaca_T-27 1 1
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 1 1
Waddlia_chondrophila_WSU_86-1044 2 2
Candidatus_Protochlamydia_amoebophila_UWE25 2 2
Parachlamydia_acanthamoebae_UV-7 2 2
Simkania_negevensis_Z 3 3
Chlamydophila_pecorum_E58 2 2
Chlamydia_muridarum_Nigg 2 2
Chlamydophila_pneumoniae_TW-183 2 2
Chlamydophila_caviae_GPIC 2 2
Chlamydophila_felis_Fe/C-56 2 2
Chlamydophila_abortus_S26/3 2 2
Chlamydia_psittaci_01DC11 2 2
Chlamydia_trachomatis_B/Jali20/OT 2 2
Opitutus_terrae_PB90-1 1 1
Elusimicrobium_minutum_Pei191 1 1
Bacteriovorax_marinus_SJ 2 2
Bdellovibrio_bacteriovorus_HD100 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Methylibium_petroleiphilum_PM1 1 1
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Rubrivivax_gelatinosus_IL144 1 1
Leptothrix_cholodnii_SP-6 1 1
Verminephrobacter_eiseniae_EF01-2 1 1
Alicycliphilus_denitrificans_K601 2 2
Ramlibacter_tataouinensis_TTB310 2 2
Delftia_sp._Cs1-4 2 2
Delftia_acidovorans_SPH-1 2 2
Polaromonas_sp._JS666 2 2
Polaromonas_naphthalenivorans_CJ2 2 2
Variovorax_paradoxus_S110 2 2
Rhodoferax_ferrireducens_T118 2 2
Acidovorax_ebreus_TPSY 2 2
Acidovorax_sp._KKS102 2 2
Acidovorax_sp._JS42 2 2
Acidovorax_citrulli_AAC00-1 2 2
Acidovorax_avenae_subsp._avenae_ATCC_19860 2 2
Comamonas_testosteroni_CNB-2 2 2
Herminiimonas_arsenicoxydans 1 1
Collimonas_fungivorans_Ter331 1 1
Janthinobacterium_sp._Marseille 1 1
Herbaspirillum_seropedicae_SmR1 1 1
Pusillimonas_sp._T7-7 1 1
Advenella_kashmirensis_WT001 1 1
Taylorella_asinigenitalis_MCE3 1 1
Taylorella_equigenitalis_MCE9 1 1
Bordetella_petrii_DSM_12804 1 1
Bordetella_avium_197N 1 1
Bordetella_pertussis_Tohama_I 1 1
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 1 1
Achromobacter_xylosoxidans_A8 1 1
Achromobacter_xylosoxidans 1 1
Phenylobacterium_zucineum_HLK1 2 2
Erythrobacter_litoralis_HTCC2594 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 2 2
Methylobacterium_sp._4-46 1 1
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Methylocella_silvestris_BL2 1 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   20 16
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   3 3
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4 4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 2 2
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 2 2
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 2 2
Coccidioides_immitis_H538.4_ 2 2
Ajellomyces_dermatitidis_ER-3_ 2 2
Histoplasma_capsulatum_H143 2 2
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 2 2
Aspergillus_fumigatus_A1163_ 2 2
Candida_albicans_WO-1_ 2 2
Saccharomyces_cerevisiae_UC5 3 3
Saccharomyces_cerevisiae_PW5 5 5
Saccharomyces_cerevisiae_FL100 3 3
Saccharomyces_cerevisiae_CLIB382 2 2
Saccharomyces_cerevisiae_CLIB324 3 3
Saccharomyces_cerevisiae_CBS7960 3 3
Saccharomyces_cerevisiae_YJM269 5 5
Saccharomyces_cerevisiae_T7 5 5
Saccharomyces_cerevisiae_FostersB 3 3
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_VL3 5 5
Saccharomyces_cerevisiae_Vin13 5 5
Saccharomyces_cerevisiae_LalvinQA23 5 5
Saccharomyces_cerevisiae_AWRI796 4 4
Saccharomyces_cerevisiae_Sigma1278b 5 5
Saccharomyces_cerevisiae_W303 5 5
Saccharomyces_cerevisiae_JAY291 5 5
Saccharomyces_cerevisiae_AWRI1631 5 5
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_T73 3 3
Saccharomyces_cerevisiae_CLIB215 5 5
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 5 5
Saccharomyces_cerevisiae_YJM789 5 5
Saccharomyces_cerevisiae_RM11-1a 5 5
Saccharomyces_cerevisiae_RM11-1a_ 5 5
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   5 5
Schizosaccharomyces_pombe_972h-_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 3 3
Batrachochytrium_dendrobatidis_JAM81_ 4 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   22 17
Hordeum_vulgare_22   (Domesticated barley)   20 19
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   17 14
Neospora_caninum_Nc-Liverpool_6.2 3 3
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 1 1
Chlamydia_pecorum_P787 2 2
Chlamydia_pecorum_W73 2 2
Chlamydia_pecorum_PV3056/3 2 2
Chlamydophila_pneumoniae_LPCoLN 2 2
Chlamydophila_pneumoniae_J138 2 2
Chlamydophila_pneumoniae_CWL029 2 2
Chlamydophila_pneumoniae_AR39 2 2
Chlamydia_psittaci_01DC12 2 2
Chlamydia_psittaci_WC 2 2
Chlamydia_psittaci_M56 2 2
Chlamydia_psittaci_WS/RT/E30 2 2
Chlamydia_psittaci_VS225 2 2
Chlamydia_psittaci_MN 2 2
Chlamydia_psittaci_GR9 2 2
Chlamydia_psittaci_84/55 2 2
Chlamydia_psittaci_08DC60 2 2
Chlamydia_psittaci_02DC15 2 2
Chlamydia_psittaci_C19/98 2 2
Chlamydia_psittaci_NJ1 2 2
Chlamydia_psittaci_CP3 2 2
Chlamydophila_psittaci_RD1 2 2
Chlamydia_psittaci_Mat116 2 2
Chlamydophila_psittaci_6BC 2 2
Chlamydophila_psittaci_6BC 2 2
Chlamydia_trachomatis_C/TW-3 2 2
Chlamydia_trachomatis_L2/434/Bu(f) 2 2
Chlamydia_trachomatis_L2/434/Bu(i) 2 2
Chlamydia_trachomatis_IU888 2 2
Chlamydia_trachomatis_IU824 2 2
Chlamydia_trachomatis_L2b/Canada2 2 2
Chlamydia_trachomatis_L2b/Canada1 2 2
Chlamydia_trachomatis_L3/404/LN 2 2
Chlamydia_trachomatis_L2b/Ams5 2 2
Chlamydia_trachomatis_L2b/Ams4 2 2
Chlamydia_trachomatis_L2b/Ams3 2 2
Chlamydia_trachomatis_L2b/Ams2 2 2
Chlamydia_trachomatis_L2b/Ams1 2 2
Chlamydia_trachomatis_L2b/795 2 2
Chlamydia_trachomatis_L2b/CV204 2 2
Chlamydia_trachomatis_L2b/LST 2 2
Chlamydia_trachomatis_L2b/UCH-2 2 2
Chlamydia_trachomatis_L2b/8200/07 2 2
Chlamydia_trachomatis_L2/25667R 2 2
Chlamydia_trachomatis_L1/224 2 2
Chlamydia_trachomatis_L1/115 2 2
Chlamydia_trachomatis_L1/440/LN 2 2
Chlamydia_trachomatis_K/SotonK1 2 2
Chlamydia_trachomatis_Ia/SotonIa3 2 2
Chlamydia_trachomatis_Ia/SotonIa1 2 2
Chlamydia_trachomatis_G/SotonG1 2 2
Chlamydia_trachomatis_F/SotonF3 2 2
Chlamydia_trachomatis_F/SW5 2 2
Chlamydia_trachomatis_F/SW4 2 2
Chlamydia_trachomatis_E/SotonE8 2 2
Chlamydia_trachomatis_E/SotonE4 2 2
Chlamydia_trachomatis_E/SW3 2 2
Chlamydia_trachomatis_D/SotonD6 2 2
Chlamydia_trachomatis_D/SotonD5 2 2
Chlamydia_trachomatis_D/SotonD1 2 2
Chlamydia_trachomatis_A/5291 2 2
Chlamydia_trachomatis_A/363 2 2
Chlamydia_trachomatis_RC-J/971 2 2
Chlamydia_trachomatis_RC-L2/55 2 2
Chlamydia_trachomatis_J/6276tet1 2 2
Chlamydia_trachomatis_RC-J/966 2 2
Chlamydia_trachomatis_RC-J(s)/122 2 2
Chlamydia_trachomatis_RC-F(s)/342 2 2
Chlamydia_trachomatis_RC-L2(s)/3 2 2
Chlamydia_trachomatis_RC-J/953 2 2
Chlamydia_trachomatis_RC-J943 2 2
Chlamydia_trachomatis_RC-Fs852 2 2
Chlamydia_trachomatis_RC-L2s46 2 2
Chlamydia_trachomatis_RC-F69 2 2
Chlamydia_trachomatis_L2c 2 2
Chlamydia_trachomatis_D-LC 2 2
Chlamydia_trachomatis_D-EC 2 2
Chlamydia_trachomatis_G/9301 2 2
Chlamydia_trachomatis_G/11074 2 2
Chlamydia_trachomatis_G/11222 2 2
Chlamydia_trachomatis_G/9768 2 2
Chlamydia_trachomatis_E/150 2 2
Chlamydia_trachomatis_E/11023 2 2
Chlamydia_trachomatis_B/TZ1A828/OT 2 2
Chlamydia_trachomatis_Sweden2 2 2
Chlamydia_trachomatis_E/Bour 2 2
Chlamydia_trachomatis_A2497 2 2
Chlamydia_trachomatis_A2497 2 2
Chlamydia_trachomatis_L2b/UCH-1/proctitis 2 2
Chlamydia_trachomatis_434/Bu 2 2
Chlamydia_trachomatis_A/HAR-13 2 2
Chlamydia_trachomatis_D/UW-3/CX 2 2
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1
Alicycliphilus_denitrificans_BC 2 2
Variovorax_paradoxus_B4 2 2
Variovorax_paradoxus_EPS 2 2
Taylorella_asinigenitalis_14/45 1 1
Taylorella_equigenitalis_14/56 1 1
Taylorella_equigenitalis_ATCC_35865 1 1
Bordetella_pertussis_CS 1 1
Bordetella_parapertussis_18323 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 1 1
Bordetella_bronchiseptica_253 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   8 7
Pan_troglodytes_69_2.1.4   (Chimpanzee)   7 6
Gorilla_gorilla_69_3.1   (Western gorilla)   7 6
Pongo_abelii_69_2   (Sumatran orangutan)   7 6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 6
Macaca_mulatta_69_1   (Rhesus monkey)   8 7
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   10 9
Otolemur_garnettii_69_3   (Small-eared galago)   10 8
Microcebus_murinus_69_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_69_3.4   (Norway rat)   7 6
Mus_musculus_69_38   (House mouse)   7 6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   7 6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   8 6
Cavia_porcellus_69_3   (Domestic guinea pig)   7 6
Oryctolagus_cuniculus_69_2   (Rabbit)   10 8
Ochotona_princeps_69   (American pika)   7 6
Tupaia_belangeri_69   (Northern tree shrew)   4 4
Sus_scrofa_69_10.2   (Pig)   6 5
Bos_taurus_69_3.1   (Cattle)   7 6
Vicugna_pacos_69_1   (Alpaca)   6 5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7 6
Mustela_putorius_furo_69_1.0   (Domestic ferret)   8 7
Ailuropoda_melanoleuca_69_1   (Giant panda)   7 6
Canis_familiaris_69_3.1   (Dog)   7 6
Felis_catus_69   (Domestic cat)   4 4
Equus_caballus_69_2   (Horse)   7 6
Myotis_lucifugus_69_2.0   (Little brown bat)   8 7
Pteropus_vampyrus_69_1   (Large flying fox)   7 6
Sorex_araneus_69_1   (European shrew)   6 5
Erinaceus_europaeus_69   (Western European hedgehog)   6 5
Procavia_capensis_69_1   (Cape rock hyrax)   6 5
Loxodonta_africana_69_3   (African savanna elephant)   7 6
Echinops_telfairi_69   (Small Madagascar hedgehog)   7 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6 5
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 5
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10 8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7 6
Ornithorhynchus_anatinus_69_5   (Platypus)   5 4
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   7 6
Gallus_gallus_69_2   (Chicken)   7 6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8 7
Anolis_carolinensis_69_2.0   (Green anole)   5 4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7 6
Latimeria_chalumnae_69_1   (Coelacanth)   8 7
Gadus_morhua_69_1   (Atlantic cod)   6 6
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   7 7
Takifugu_rubripes_69_4   (Torafugu)   7 6
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   7 6
Oryzias_latipes_69_1   (Japanese medaka)   7 6
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   7 6
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7 6
Danio_rerio_69_9   (Zebrafish)   7 7
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   3 3
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   3 3
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5 5
Arabidopsis_thaliana_10   (Thale cress)   24 19

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   52 46
Homo_sapiens__(NCBI_version)   (Human)   12 11
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7 6
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 3
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   4 2
Lotus_japonicus__(Early_assembly) 16 14
Malus_x_domestica_(Duplicate)   (Apple)   40 31
Ricinus_communis__(Early_assembly)   (Castor bean)   18 13
Nicotiana_benthamiana_0.4.4_(Early_draft) 39 33
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   17 14
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   19 16
Phoenix_dactylifera__(Early_draft)   (Date palm)   18 13
NCBI_plasmid_sequences_(Plasmids) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 260 260
NCBI_viral_sequences_(Viral) 26 24
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 552 552
STRING_v9.0.5_(STRING) 641 580
Uniprot_2018_03_genome 9984 9106
PDB_chains_(SCOP_1.75)_(PDB) 10 10
NCBI_2017_08_genome 11059 9898
Protozoadb_2010_08_(Protozoadb) 42 42
UniProt__viral_sequences_(Viral) 9 8
TargetDB__(Targets) 30 29

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