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Domain combinations for Head decoration protein D (gpD, major capsid protein D) superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Head decoration protein D (gpD, major capsid protein D) domain in that genome.

Complete genomes
Genome     Number   Proteins
Sinorhizobium_meliloti_AK83 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Hahella_chejuensis_KCTC_2396 1 1
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 1 1
Shigella_boydii_CDC_3083-94 3 3
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1

Strains
Genome     Number   Proteins
Glaciecola_psychrophila_170 1 1
Serratia_plymuthica_S13 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2002017 1 1
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Shigella_boydii_Sb227 1 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_E._coli_PMV-1 4 4
Escherichia_coli_JJ1886 1 1
Escherichia_coli_O7:K1_str._CE10 3 3
Escherichia_coli_O104:H4_str._2009EL-2050 3 3
Escherichia_coli_O104:H4_str._2009EL-2071 4 4
Escherichia_coli_O104:H4_str._2011C-3493 3 3
Escherichia_coli_NA114 2 2
Escherichia_coli_str._'clone_D_i2' 3 3
Escherichia_coli_str._'clone_D_i14' 3 3
Escherichia_coli_UM146 3 3
Escherichia_coli_042 3 3
Escherichia_coli_Xuzhou21 3 3
Escherichia_coli_IHE3034 4 4
Escherichia_coli_UMNK88 1 1
Escherichia_coli_O83:H1_str._NRG_857C 2 2
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_LF82 1 1
Escherichia_coli_ED1a 3 3
Escherichia_coli_IAI39 3 3
Escherichia_coli_UMN026 3 3
Escherichia_coli_55989 2 2
Escherichia_coli_S88 3 3
Escherichia_coli_IAI1 2 2
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_ATCC_8739 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SE15 1 1
Escherichia_coli_SE11 4 4
Escherichia_coli_O103:H2_str._12009 6 6
Escherichia_coli_UTI89 2 2
Escherichia_coli_536 1 1
Escherichia_coli_ETEC_H10407 2 2
Escherichia_coli_O55:H7_str._RM12579 6 6
Escherichia_coli_O55:H7_str._CB9615 6 6
Escherichia_coli_O26:H11_str._11368 7 7
Escherichia_coli_CFT073 4 4
Escherichia_coli_O111:H-_str._11128 3 3
Escherichia_coli_O127:H6_str._E2348/69 1 1
Escherichia_coli_O157:H7_str._TW14359 3 3
Escherichia_coli_O157:H7_str._EC4115 5 5
Escherichia_coli_O157:H7_str._Sakai 4 4
Escherichia_coli_O157:H7_str._EDL933 3 3
Escherichia_coli_BW2952 1 1
Escherichia_coli_str._K-12_substr._DH10B 1 1

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Others
Genome     Number   Proteins
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
STRING_v9.0.5_(STRING) 76 76
PDB_chains_(SCOP_1.75)_(PDB) 4 4
Uniprot_2018_03_genome 709 709
NCBI_2017_08_genome 14947 14947
UniProt__viral_sequences_(Viral) 5 5
NCBI_viral_sequences_(Viral) 12 12
TargetDB__(Targets) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 22 22
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 58 58

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