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Domain combinations for YcfA/nrd intein domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a YcfA/nrd intein domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Dictyostelium_discoideum 1 1
Acaryochloris_marina_MBIC11017 4 4
Synechocystis_sp._PCC_6803 2 2
Synechococcus_sp._PCC_7502 1 1
Synechococcus_sp._PCC_6312 5 5
Synechococcus_elongatus_PCC_7942 2 2
Microcoleus_sp._PCC_7113 2 2
Cyanothece_sp._PCC_8802 13 13
Gloeocapsa_sp._PCC_7428 4 4
Halothece_sp._PCC_7418 11 11
Microcystis_aeruginosa_NIES-843 26 26
Rivularia_sp._PCC_7116 3 3
Calothrix_sp._PCC_7507 5 5
Anabaena_variabilis_ATCC_29413 2 2
Nostoc_sp._PCC_7107 5 5
Nostoc_punctiforme_PCC_73102 5 5
Nostoc_sp._PCC_7120 2 2
Nostoc_sp._PCC_7524 5 5
Anabaena_sp._90 18 18
Conexibacter_woesei_DSM_14684 1 1
Eggerthella_sp._YY7918 1 1
Eggerthella_lenta_DSM_2243 2 2
Rubrobacter_xylanophilus_DSM_9941 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Frankia_symbiont_of_Datisca_glomerata 1 1
Frankia_sp._EAN1pec 2 2
Frankia_alni_ACN14a 2 2
Actinosynnema_mirum_DSM_43827 1 1
Propionibacterium_acnes_SK137 1 1
Salinispora_arenicola_CNS-205 1 1
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 2 2
Corynebacterium_variabile_DSM_44702 1 1
Microbacterium_testaceum_StLB037 1 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1 1
Intrasporangium_calvum_DSM_43043 1 1
Arthrobacter_chlorophenolicus_A6 1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 6 6
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 2 2
Truepera_radiovictrix_DSM_17093 1 1
Oceanithermus_profundus_DSM_14977 1 1
Meiothermus_silvanus_DSM_9946 2 2
Meiothermus_ruber_DSM_1279 1 1
Thermus_sp._CCB_US3_UF1 1 1
Thermus_scotoductus_SA-01 4 4
Thermus_thermophilus_HB27 4 4
Finegoldia_magna_ATCC_29328 2 2
Veillonella_parvula_DSM_2008 1 1
Megasphaera_elsdenii_DSM_20460 1 1
Acidaminococcus_fermentans_DSM_20731 1 1
Selenomonas_sputigena_ATCC_35185 2 2
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Sulfobacillus_acidophilus_DSM_10332 1 1
Candidatus_Desulforudis_audaxviator_MP104C 2 2
Thermincola_potens_JR 2 2
Pelotomaculum_thermopropionicum_SI 1 1
Desulfosporosinus_acidiphilus_SJ4 1 1
Desulfosporosinus_orientis_DSM_765 2 2
Syntrophobotulus_glycolicus_DSM_8271 3 3
Desulfitobacterium_hafniense_Y51 1 1
Desulfitobacterium_dehalogenans_ATCC_51507 2 2
Desulfotomaculum_reducens_MI-1 1 1
Desulfotomaculum_acetoxidans_DSM_771 2 2
Desulfotomaculum_kuznetsovii_DSM_6115 3 3
Eubacterium_limosum_KIST612 4 4
[Ruminococcus]_obeum 1 1
Eubacterium_rectale_M104/1 2 2
Eubacterium_rectale_ATCC_33656 2 2
Butyrivibrio_fibrisolvens 1 1
Syntrophothermus_lipocalidus_DSM_12680 3 3
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 6 6
Heliobacterium_modesticaldum_Ice1 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_kluyveri_DSM_555 4 4
Caldicellulosiruptor_obsidiansis_OB47 2 2
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 1 1
Caldicellulosiruptor_owensensis_OL 1 1
Caldicellulosiruptor_lactoaceticus_6A 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 4 4
Caldicellulosiruptor_bescii_DSM_6725 2 2
Thermoanaerobacterium_xylanolyticum_LX-11 1 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 3 3
Tepidanaerobacter_acetatoxydans_Re1 1 1
Carboxydothermus_hydrogenoformans_Z-2901 1 1
Moorella_thermoacetica_ATCC_39073 3 3
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 2 2
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1 1
Tetragenococcus_halophilus_NBRC_12172 2 2
Enterococcus_faecalis_62 1 1
Weissella_koreensis_KACC_15510 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 1 1
Lactobacillus_buchneri_NRRL_B-30929 1 1
Streptococcus_gallolyticus_UCN34 1 1
Streptococcus_pseudopneumoniae_IS7493 2 2
Streptococcus_equi_subsp._equi_4047 1 1
Streptococcus_infantarius_subsp._infantarius_CJ18 1 1
Streptococcus_uberis_0140J 1 1
Streptococcus_pyogenes_str._Manfredo 1 1
Streptococcus_mutans_NN2025 1 1
Kyrpidia_tusciae_DSM_2912 5 5
Bacillus_atrophaeus_1942 2 2
Ignavibacterium_album_JCM_16511 1 1
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chloroherpeton_thalassium_ATCC_35110 1 1
Marivirga_tractuosa_DSM_4126 1 1
Spirosoma_linguale_DSM_74 2 2
Runella_slithyformis_DSM_19594 1 1
Bacteroides_sp._CF50 1 1
Bacteroides_salanitronis_DSM_18170 1 1
Bacteroides_fragilis_YCH46 1 1
Solitalea_canadensis_DSM_3403 2 2
Fluviicola_taffensis_DSM_16823 1 1
Capnocytophaga_ochracea_DSM_7271 1 1
Waddlia_chondrophila_WSU_86-1044 2 2
Phycisphaera_mikurensis_NBRC_102666 1 1
Rhodopirellula_baltica_SH_1 1 1
Akkermansia_muciniphila_ATCC_BAA-835 1 1
Fretibacterium_fastidiosum 1 1
Anaerobaculum_mobile_DSM_13181 3 3
Turneriella_parva_DSM_21527 2 2
Brachyspira_murdochii_DSM_12563 1 1
Brachyspira_pilosicoli_95/1000 2 2
Brachyspira_hyodysenteriae_WA1 2 2
Spirochaeta_smaragdinae_DSM_11293 1 1
Spirochaeta_caldaria_DSM_7334 3 3
Treponema_azotonutricium_ZAS-9 2 2
Treponema_primitia_ZAS-2 4 4
Treponema_denticola_ATCC_35405 6 6
Thermodesulfatator_indicus_DSM_15286 3 3
Thermodesulfobacterium_sp._OPB45 1 1
Petrotoga_mobilis_SJ95 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Thermotoga_thermarum_DSM_5069 1 1
Thermotoga_sp._RQ2 1 1
Thermotoga_naphthophila_RKU-10 1 1
Thermotoga_petrophila_RKU-1 1 1
Thermotoga_maritima_MSB8 1 1
Caldisericum_exile_AZM16c01 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 5 5
Granulicella_tundricola_MP5ACTX9 1 1
Terriglobus_saanensis_SP1PR4 1 1
Terriglobus_roseus_DSM_18391 3 3
Thermodesulfovibrio_yellowstonii_DSM_11347 3 3
Candidatus_Nitrospira_defluvii 2 2
Leptospirillum_ferrooxidans_C2-3 1 1
Leptotrichia_buccalis_C-1013-b 1 1
Ilyobacter_polytropus_DSM_2926 1 1
Candidatus_Methylomirabilis_oxyfera 7 7
Acidithiobacillus_ferrivorans_SS3 3 3
Acidithiobacillus_caldus_SM-1 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Arcobacter_butzleri_RM4018 1 1
Campylobacter_hominis_ATCC_BAA-381 1 1
Campylobacter_curvus_525.92 1 1
Campylobacter_concisus_13826 1 1
Campylobacter_jejuni_subsp._doylei_269.97 1 1
uncultured_Sulfuricurvum_sp._RIFRC-1 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Helicobacter_pylori_B38 5 5
Desulfobacca_acetoxidans_DSM_11109 3 3
Desulfomonile_tiedjei_DSM_6799 2 2
Desulfurivibrio_alkaliphilus_AHT2 1 1
Desulfotalea_psychrophila_LSv54 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfococcus_oleovorans_Hxd3 1 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Desulfovibrio_magneticus_RS-1 2 2
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Geobacter_uraniireducens_Rf4 4 4
Geobacter_metallireducens_GS-15 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Babela_massiliensis 1 1
Neisseria_gonorrhoeae_NCCP11945 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 1 1
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_metallidurans_CH34 1 1
Ralstonia_eutropha_H16 1 1
Burkholderia_sp._CCGE1002 1 1
Burkholderia_thailandensis_E264 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Rhodoferax_ferrireducens_T118 1 1
Pusillimonas_sp._T7-7 2 2
Advenella_kashmirensis_WT001 1 1
Taylorella_asinigenitalis_MCE3 1 1
Bordetella_pertussis_Tohama_I 1 1
Bordetella_parapertussis_12822 2 2
Achromobacter_xylosoxidans_A8 1 1
Thiobacillus_denitrificans_ATCC_25259 1 1
Nitrosomonas_sp._Is79A3 3 3
Sideroxydans_lithotrophicus_ES-1 1 1
Caulobacter_crescentus_NA1000 1 1
Erythrobacter_litoralis_HTCC2594 1 1
Sphingobium_japonicum_UT26S 1 1
Sphingomonas_wittichii_RW1 1 1
Maricaulis_maris_MCS10 1 1
Rhodobacter_sphaeroides_ATCC_17029 1 1
Rhodospirillum_rubrum_F11 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_621H 1 1
Micavibrio_aeruginosavorus_ARL-13 1 1
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
Rickettsia_philipii_str._364D 1 1
Rickettsia_heilongjiangensis_054 1 1
Rickettsia_felis_URRWXCal2 1 1
Rickettsia_parkeri_str._Portsmouth 1 1
Rickettsia_montanensis_str._OSU_85-930 1 1
Candidatus_Rickettsia_amblyommii_str._GAT-30V 1 1
Rickettsia_akari_str._Hartford 1 1
Rickettsia_rickettsii_str._'Sheila_Smith' 1 1
Rickettsia_conorii_str._Malish_7 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 2 2
Methylobacterium_radiotolerans_JCM_2831 1 1
Sinorhizobium_meliloti_AK83 2 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 1 1
Beijerinckia_indica_subsp._indica_ATCC_9039 1 1
Rhodopseudomonas_palustris_BisA53 2 2
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_sp._ORS_278 1 1
Methylocystis_sp._SC2 4 4
Bartonella_tribocorum_CIP_105476 1 1
Bartonella_henselae_str._Houston-1 1 1
Bartonella_grahamii_as4aup 2 2
Haemophilus_somnus_129PT 2 2
Gallibacterium_anatis_UMN179 1 1
Haemophilus_parasuis_SH0165 2 2
Haemophilus_ducreyi_35000HP 1 1
Haemophilus_influenzae_PittEE 2 2
Oceanimonas_sp._GK1 1 1
Tolumonas_auensis_DSM_9187 1 1
Marinobacter_aquaeolei_VT8 1 1
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 1 1
Methylomicrobium_alcaliphilum 2 2
Methylomonas_methanica_MC09 1 1
Rhodanobacter_denitrificans 1 1
Pseudoxanthomonas_spadix_BD-a59 1 1
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 2 2
Allochromatium_vinosum_DSM_180 1 1
Thiocystis_violascens_DSM_198 5 5
Nitrosococcus_watsonii_C-113 8 8
Nitrosococcus_halophilus_Nc4 13 13
Nitrosococcus_oceani_ATCC_19707 4 4
Photorhabdus_asymbiotica 2 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 2 2
Xenorhabdus_nematophila_ATCC_19061 1 1
Proteus_mirabilis_HI4320 1 1
Rahnella_sp._Y9602 2 2
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 1 1
Yersinia_pestis_Pestoides_F 2 2
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
Serratia_sp._AS12 1 1
Serratia_plymuthica_AS9 1 1
Serratia_proteamaculans_568 1 1
Dickeya_dadantii_Ech703 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Pantoea_sp._At-9b 1 1
Erwinia_tasmaniensis_Et1/99 1 1
Erwinia_billingiae_Eb661 1 1
Erwinia_amylovora_ATCC_49946 2 2
Cronobacter_sakazakii_ES15 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Salmonella_bongori_NCTC_12419 1 1
Klebsiella_oxytoca_E718 2 2
Enterobacter_aerogenes_KCTC_2190 2 2
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Citrobacter_rodentium_ICC168 1 1
Citrobacter_koseri_ATCC_BAA-895 1 1
Pseudomonas_sp._TKP 2 2
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_fluorescens_SBW25 3 3
Acinetobacter_baumannii_ATCC_17978 1 1
Thermofilum_sp._1910b 1 1
halophilic_archaeon_DL31 1 1
Methanosaeta_harundinacea_6Ac 6 6
Methanosaeta_concilii_GP6 11 11
Methanosarcina_acetivorans_C2A 3 3
Methanosarcina_mazei_Go1 4 4
Methanosarcina_barkeri_str._Fusaro 3 3
Methanosphaerula_palustris_E1-9c 3 3
Methanoregula_boonei_6A8 3 3
Methanospirillum_hungatei_JF-1 8 8
Methanoplanus_petrolearius_DSM_11571 3 3
Methanoculleus_bourgensis_MS2 3 3
Methanoculleus_marisnigri_JR1 3 3
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Archaeoglobus_veneficus_SNP6 4 4
Thermococcus_sp._4557 1 1
Thermococcus_kodakarensis_KOD1 3 3
Thermococcus_barophilus_MP 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 2 2
Natrinema_sp._J7-2 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Haloferax_volcanii_DS2 2 2
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 2 2
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halobacterium_salinarum_R1 1 1
Halobacterium_sp._NRC-1 1 1
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_sp._FS406-22 1 1
methanocaldococcus_infernus_ME 1 1

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Strains
Genome     Number   Proteins
Chroococcidiopsis_thermalis_PCC_7203 5 5
Chamaesiphon_minutus_PCC_6605 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 2 2
Synechocystis_sp._PCC_6803_substr._PCC-N 2 2
Synechocystis_sp._PCC_6803_substr._GT-I 2 2
Synechocystis_sp._PCC_6803 2 2
Cyanobium_gracile_PCC_6307 2 2
Dactylococcopsis_salina_PCC_8305 12 12
Synechococcus_sp._RCC307 1 1
Synechococcus_sp._PCC_7002 2 2
Synechococcus_elongatus_PCC_6301 2 2
Crinalium_epipsammum_PCC_9333 10 10
Oscillatoria_nigro-viridis_PCC_7112 6 6
Oscillatoria_acuminata_PCC_6304 2 2
Arthrospira_platensis_NIES-39 5 5
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7425 8 8
Cyanothece_sp._PCC_7424 4 4
Cyanothece_sp._ATCC_51142 9 9
Cyanothece_sp._PCC_8801 11 11
Cyanobacterium_aponinum_PCC_10605 5 5
Cyanobacterium_stanieri_PCC_7202 4 4
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Stanieria_cyanosphaera_PCC_7437 11 11
Calothrix_parietina_Calothrix_sp._PCC_6303 2 2
Cylindrospermum_stagnale_PCC_7417 9 9
Anabaena_cylindrica_PCC_7122 5 5
Gordonibacter_pamelaeae_7-10-1-b 2 2
Frankia_sp._CcI3 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Propionibacterium_acnes_TypeIA2_P.acn31 1 1
Propionibacterium_acnes_TypeIA2_P.acn17 1 1
Propionibacterium_acnes_TypeIA2_P.acn33 1 1
Propionibacterium_acnes_C1 1 1
Propionibacterium_acnes_HL096PA1 1 1
Propionibacterium_acnes_6609 1 1
Propionibacterium_acnes_266 1 1
Propionibacterium_acnes_KPA171202 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Corynebacterium_callunae_DSM_20147 1 1
Clavibacter_michiganensis_subsp._sepedonicus 1 1
Gardnerella_vaginalis_HMP9231 1 1
Gardnerella_vaginalis_ATCC_14019 1 1
Bifidobacterium_bifidum_PRL2010 1 1
Thermus_oshimai_JL-2 5 5
Thermus_thermophilus_JL-18 4 4
Thermus_thermophilus_SG0.5JP17-16 5 5
Thermus_thermophilus_HB8 2 2
Ruminococcus_champanellensis_18P13 1 1
Sulfobacillus_acidophilus_TPY 1 1
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Desulfotomaculum_gibsoniae_DSM_7213 6 6
Roseburia_intestinalis_XB6B4 1 1
Clostridium_sp._SY8519 1 1
Clostridium_kluyveri_NBRC_12016 2 2
Clostridium_perfringens_str._13 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 4 4
Thermacetogenium_phaeum_DSM_12270 2 2
Thermoanaerobacter_sp._X513 1 1
Enterococcus_mundtii_QU_25 3 3
Enterococcus_faecium_Aus0085 1 1
Lactobacillus_reuteri_I5007 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 1 1
Streptococcus_anginosus_C238 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 2 2
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 2 2
Streptococcus_lutetiensis_033 2 2
Streptococcus_pyogenes_HSC5 1 1
Streptococcus_pyogenes_MGAS10750 1 1
Streptococcus_pyogenes_MGAS10270 1 1
Streptococcus_pyogenes_MGAS9429 1 1
Streptococcus_pyogenes_MGAS8232 1 1
Streptococcus_pneumoniae_A026 1 1
Streptococcus_pneumoniae_ST556 1 1
Streptococcus_pneumoniae_SPNA45 1 1
Streptococcus_pneumoniae_gamPNI0373 1 1
Streptococcus_pneumoniae_AP200 1 1
Streptococcus_pneumoniae_TCH8431/19A 1 1
Streptococcus_pneumoniae_G54 1 1
Streptococcus_pneumoniae_JJA 1 1
Streptococcus_pneumoniae_70585 1 1
Streptococcus_pneumoniae_Hungary19A-6 1 1
Streptococcus_pneumoniae_Taiwan19F-14 1 1
Streptococcus_pneumoniae_670-6B 1 1
Streptococcus_pneumoniae_R6 1 1
Streptococcus_pneumoniae_TIGR4 1 1
Streptococcus_agalactiae_ILRI005 1 1
Streptococcus_agalactiae_2603V/R 1 1
Streptococcus_mutans_GS-5 1 1
Streptococcus_mutans_LJ23 1 1
Streptococcus_suis_T15 1 1
Streptococcus_suis_TL13 1 1
Streptococcus_suis_D12 1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Bacillus_amyloliquefaciens_DSM_7 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1 1
Chlorobium_phaeobacteroides_BS1 3 3
Psychroflexus_torquis_ATCC_700755 1 1
Riemerella_anatipestifer_RA-CH-1 1 1
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Thermotoga_maritima_MSB8 1 1
Leptospirillum_ferriphilum_ML-04 2 2
Fusobacterium_nucleatum_subsp._animalis_4_8 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_exovorus_JSS 1 1
Campylobacter_jejuni_subsp._jejuni_S3 1 1
Campylobacter_jejuni_subsp._jejuni_81-176 2 2
Campylobacter_coli_CVM_N29710 1 1
Helicobacter_pylori_Gambia94/24 1 1
Helicobacter_pylori_2017 1 1
Helicobacter_pylori_2018 1 1
Helicobacter_pylori_908 1 1
Helicobacter_pylori_B8 1 1
Helicobacter_pylori_HPAG1 1 1
Helicobacter_pylori_J99 1 1
Desulfobacula_toluolica_Tol2 3 3
Desulfovibrio_vulgaris_RCH1 1 1
Desulfovibrio_vulgaris_str._Hildenborough 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 2 2
Geobacter_sp._M18 2 2
Neisseria_gonorrhoeae_FA_1090 1 1
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_ambifaria_MC40-6 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1
Alicycliphilus_denitrificans_BC 2 2
Bordetella_pertussis_CS 1 1
Bordetella_parapertussis_18323 1 1
Bordetella_parapertussis_Bpp5 2 2
Bordetella_bronchiseptica_MO149 1 1
Sulfuricella_denitrificans_skB26 1 1
Caulobacter_crescentus_CB15 1 1
Zymomonas_mobilis_subsp._mobilis_CP4 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 2 2
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1 1
Rhodospirillum_rubrum_ATCC_11170 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Acetobacter_pasteurianus_386B 1 1
Micavibrio_aeruginosavorus_EPB 1 1
Rickettsia_slovaca_str._D-CWPP 1 1
Rickettsia_rickettsii_str._Arizona 1 1
Rickettsia_rickettsii_str._Brazil 1 1
Rickettsia_rickettsii_str._Hauke 1 1
Rickettsia_rickettsii_str._Colombia 1 1
Rickettsia_rickettsii__str._Hlp#2 1 1
Rickettsia_rickettsii_str._Hino 1 1
Rickettsia_rickettsii_str._Iowa 1 1
Sinorhizobium_fredii_HH103 1 1
Sinorhizobium_meliloti_2011 1 1
Sinorhizobium_meliloti_GR4 1 1
Sinorhizobium_meliloti_SM11 1 1
Sinorhizobium_meliloti_BL225C 2 2
Sinorhizobium_meliloti_1021 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 1 1
Rhodopseudomonas_palustris_DX-1 3 3
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 5 5
Rhodopseudomonas_palustris_BisB18 2 2
Bartonella_vinsonii_subsp._berkhoffii_str._Winnie 2 2
Aggregatibacter_actinomycetemcomitans_ANH9381 1 1
Haemophilus_somnus_2336 1 1
Mannheimia_haemolytica_USMARC_2286 1 1
Mannheimia_haemolytica_M42548 2 2
Mannheimia_haemolytica_D174 1 1
Mannheimia_haemolytica_D171 1 1
Mannheimia_haemolytica_D153 2 2
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1 1
Haemophilus_parasuis_ZJ0906 3 3
Haemophilus_influenzae_F3047 1 1
Haemophilus_influenzae_86-028NP 2 2
Haemophilus_influenzae_R2866 2 2
Haemophilus_influenzae_R2846 1 1
Actinobacillus_suis_H91-0380 1 1
Vibrio_vulnificus_YJ016 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 5 5
Thioflavicoccus_mobilis_8321 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Edwardsiella_tarda_FL6-60 1 1
Rahnella_aquatilis_HX2 1 1
Yersinia_pseudotuberculosis_PB1/+ 1 1
Yersinia_pseudotuberculosis_YPIII 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_pestis_biovar_Microtus_str._91001 3 3
Yersinia_pestis_A1122 3 3
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 3 3
Yersinia_pestis_Nepal516 3 3
Yersinia_pestis_Antiqua 3 3
Yersinia_pestis_Angola 2 2
Yersinia_pestis_CO92 3 3
Yersinia_pestis_KIM10+ 2 2
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1 1
Serratia_sp._AS13 1 1
Serratia_plymuthica_S13 2 2
Serratia_marcescens_WW4 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Erwinia_amylovora_CFBP1430 1 1
Cronobacter_sakazakii_SP291 1 1
Shigella_dysenteriae_1617 1 1
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 3 3
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 2 2
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_oxytoca_KCTC_1686 1 1
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 2 2
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 3 3
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_JJ1886 5 5
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 2 2
Escherichia_coli_O104:H4_str._2009EL-2071 2 2
Escherichia_coli_O104:H4_str._2011C-3493 3 3
Escherichia_coli_NA114 4 4
Escherichia_coli_str._'clone_D_i2' 2 2
Escherichia_coli_str._'clone_D_i14' 2 2
Escherichia_coli_UM146 2 2
Escherichia_coli_042 6 6
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_UMNK88 2 2
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_ABU_83972 2 2
Escherichia_coli_KO11FL 2 2
Escherichia_coli_KO11FL 2 2
Escherichia_coli_ED1a 2 2
Escherichia_coli_IAI39 2 2
Escherichia_coli_UMN026 4 4
Escherichia_coli_55989 2 2
Escherichia_coli_S88 4 4
Escherichia_coli_W 2 2
Escherichia_coli_W 2 2
Escherichia_coli_DH1 2 2
Escherichia_coli_DH1 2 2
Escherichia_coli_ATCC_8739 2 2
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_SMS-3-5 3 3
Escherichia_coli_SE15 2 2
Escherichia_coli_SE11 3 3
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_UTI89 2 2
Escherichia_coli_536 2 2
Escherichia_coli_ETEC_H10407 4 4
Escherichia_coli_O55:H7_str._RM12579 1 1
Escherichia_coli_O55:H7_str._CB9615 1 1
Escherichia_coli_O26:H11_str._11368 3 3
Escherichia_coli_CFT073 4 4
Escherichia_coli_O111:H-_str._11128 2 2
Escherichia_coli_O157:H7_str._TW14359 2 2
Escherichia_coli_O157:H7_str._EC4115 2 2
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_O157:H7_str._EDL933 1 1
Escherichia_coli_str._K-12_substr._MDS42 1 1
Escherichia_coli_BW2952 2 2
Escherichia_coli_str._K-12_substr._MG1655 2 2
Escherichia_coli_str._K-12_substr._W3110 2 2
Escherichia_coli_str._K-12_substr._DH10B 2 2
Enterobacter_cloacae_SCF1 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Pseudomonas_putida_NBRC_14164 2 2
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_poae_RE*1-1-14 2 2
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 2 2
Pseudomonas_fluorescens_R124 3 3
Pseudomonas_fluorescens_Pf0-1 2 2
Pseudomonas_resinovorans_NBRC_106553 2 2
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Acinetobacter_sp.__SH024 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_D1279779 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 2 2
Acinetobacter_baumannii_SDF 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_ACICU 1 1
Acinetobacter_junii__SH205 1 1
Methanomethylovorans_hollandica_DSM_15978 3 3
Methanolobus_psychrophilus_R15 4 4
Methanosarcina_mazei_Tuc01 3 3
Methanoregula_formicica_Methanoregula_formicicum_SMSP 3 3
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Thermococcus_sp._AM4 3 3
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_furiosus_DSM_3638 2 2
Halovivax_ruber_XH-70 2 2
Halorhabdus_tiamatea_SARL4B 2 2
Natronomonas_moolapensis_8.8.11 2 2
Haloarcula_hispanica_N601 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 222 222
NCBI_viral_sequences_(Viral) 7 7
PDB_chains_(SCOP_1.75)_(PDB) 3 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 13 13
TargetDB__(Targets) 11 11
UniProt__viral_sequences_(Viral) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 8 8
STRING_v9.0.5_(STRING) 472 472
Uniprot_2018_03_genome 12489 12489
NCBI_2017_08_genome 57296 57296

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