SUPERFAMILY 1.75 HMM library and genome assignments server

Domain combinations for Hect, E3 ligase catalytic domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Hect, E3 ligase catalytic domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   99 98
Pan_troglodytes_76_2.1.4   (Chimpanzee)   26 26
Gorilla_gorilla_76_3.1   (Western gorilla)   38 38
Pongo_abelii_76_2   (Sumatran orangutan)   32 32
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   30 30
Papio_anubis_76   (Olive baboon)   31 31
Macaca_mulatta_76_1   (Rhesus monkey)   47 47
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   66 66
Otolemur_garnettii_76_3   (Small-eared galago)   28 28
Microcebus_murinus_76_1   (Gray mouse lemur)   28 23
Tarsius_syrichta_76_1   (Philippine tarsier)   33 28
Rattus_norvegicus_76_5.0   (Norway rat)   27 27
Mus_musculus_76_38   (House mouse)   49 49
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   24 24
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   26 25
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   29 29
Cavia_porcellus_76_3   (Domestic guinea pig)   27 27
Oryctolagus_cuniculus_76_2   (Rabbit)   29 29
Ochotona_princeps_76   (American pika)   30 28
Tupaia_belangeri_76   (Northern tree shrew)   33 27
Sus_scrofa_76_10.2   (Pig)   35 35
Bos_taurus_76_3.1   (Cattle)   30 30
Ovis_aries_76_3.1   (Sheep)   34 34
Vicugna_pacos_76_1   (Alpaca)   29 26
Tursiops_truncatus_76_1   (Bottlenosed dolphin)   32 28
Mustela_putorius_furo_76_1.0   (Domestic ferret)   29 29
Ailuropoda_melanoleuca_76_1   (Giant panda)   32 32
Canis_familiaris_76_3.1   (Dog)   42 42
Felis_catus_76_6.2   (Domestic cat)   29 29
Equus_caballus_76_2   (Horse)   36 36
Myotis_lucifugus_76_2.0   (Little brown bat)   30 30
Pteropus_vampyrus_76_1   (Large flying fox)   30 28
Sorex_araneus_76_1   (European shrew)   35 26
Erinaceus_europaeus_76   (Western European hedgehog)   32 27
Procavia_capensis_76_1   (Cape rock hyrax)   32 28
Loxodonta_africana_76_3   (African savanna elephant)   43 43
Echinops_telfairi_76   (Small Madagascar hedgehog)   31 25
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   34 34
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   32 27
Macropus_eugenii_76_1.0   (Tammar wallaby)   28 24
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   34 34
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   28 28
Ornithorhynchus_anatinus_76_5   (Platypus)   36 35
Saccoglossus_kowalevskii_v3.0 106 102
Petromyzon_marinus_76_7.0   (Sea lamprey)   10 10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   31 31
Ficedula_albicollis_76_1.0   (Collared flycatcher)   27 27
Meleagris_gallopavo_76_2   (Turkey)   28 28
Gallus_gallus_76_4   (Chicken)   29 29
Anas_platyrhynchos_76_1.0   (Mallard)   26 26
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   36 36
Anolis_carolinensis_76_2.0   (Green anole)   27 27
Xenopus_laevis_   (African clawed frog)   30 30
Xenopus_tropicalis_76_4.2   (Western clawed frog)   36 36
Latimeria_chalumnae_76_1   (Coelacanth)   40 40
Lepisosteus_oculatus_76   (Spotted gar)   48 48
Gadus_morhua_76_1   (Atlantic cod)   58 54
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   44 44
Takifugu_rubripes_76_4   (Torafugu)   94 94
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   46 46
Oryzias_latipes_76_1   (Japanese medaka)   45 45
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   34 34
Poecilia_formosa_76   (Amazon molly)   37 36
Oreochromis_niloticus_76_1.0   (Nile tilapia)   58 58
Astyanax_mexicanus_76   (Mexican tetra)   42 42
Danio_rerio_76_9   (Zebrafish)   57 57
Branchiostoma_floridae_1.0   (Florida lancelet)   51 49
Oikopleura_dioica 14 14
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   44 44
Ciona_intestinalis_76   (Vase tunicate)   17 17
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   64 60
Crassostrea_gigas_22   (Pacific oyster)   36 35
Lottia_gigantea_   (Owl limpet)   25 25
Helobdella_robusta_ 17 17
Capitella_sp._I_ 38 38
Danaus_plexippus_OGS1.0   (Monarch butterfly)   14 14
Heliconius_melpomene_   (Postman butterfly)   14 14
Bombyx_mori_   (Domestic silkworm)   16 15
Nasonia_vitripennis_   (Jewel wasp)   11 11
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   31 31
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   14 14
Linepithema_humile_v1.1   (Argentine ant)   15 15
Solenopsis_invicta_v.2.2.3   (Red fire ant)   18 18
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   14 14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   14 14
Atta_cephalotes_v1.1 14 14
Camponotus_floridanus_v3.3   (Florida carpenter ant)   14 14
Drosophila_grimshawi_1.3 16 16
Drosophila_willistoni_1.3 15 15
Drosophila_pseudoobscura_2.13 15 15
Drosophila_persimilis_1.3 17 17
Drosophila_suzukii 15 14
Drosophila_yakuba_1.3 14 14
Drosophila_simulans_1.3 13 13
Drosophila_sechellia_1.3 13 13
Drosophila_melanogaster_76_5   (Fruit fly)   42 42
Drosophila_erecta_1.3 15 15
Drosophila_ananassae_1.3 14 14
Drosophila_virilis_1.2 13 13
Drosophila_mojavensis_1.3 14 14
Megaselia_scalaris_22 9 9
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   16 15
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   18 17
Anopheles_darlingi_22   (American malaria mosquito)   17 17
Anopheles_gambiae_49_3j   (African malaria mosquito)   16 15
Tribolium_castaneum_3.0   (Red flour beetle)   16 16
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   14 14
Rhodnius_prolixus_22 15 15
Acyrthosiphon_pisum_   (Pea aphid)   14 14
Daphnia_pulex_   (Common water flea)   27 27
Strigamia_maritima_22 21 21
Tetranychus_urticae_   (Two-spotted spider mite)   14 14
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   9 9
Pristionchus_pacificus_ 12 12
Meloidogyne_incognita_   (Southern root-knot nematode)   21 21
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 10 10
Brugia_malayi_WS218   (Agent of lymphatic filariasis)   25 25
Caenorhabditis_japonica_ 8 8
Caenorhabditis_brenneri_ 13 13
Caenorhabditis_remanei_ 10 10
Caenorhabditis_elegans_76_235   (Roundworm)   18 18
Caenorhabditis_briggsae_2 9 9
Trichinella_spiralis_22 8 8
Hymenolepis_microstoma_ 19 19
Echinococcus_multilocularis_ 12 12
Echinococcus_granulosus_ 13 12
Taenia_solium_   (Pork tapeworm)   15 15
Schistosoma_mansoni_ 18 17
Acropora_digitifera_v1.0 71 69
Nematostella_vectensis_1.0   (Starlet sea anemone)   33 33
Hydra_vulgaris 23 23
Amphimedon_queenslandica 76 75
Trichoplax_adhaerens_ 19 19
Proterospongia_sp._ATCC_50818_ 20 20
Monosiga_brevicollis_ 21 21
Sphaeroforma_arctica_JP610_ 14 14
Capsaspora_owczarzaki_ATCC_30864_ 18 18
Conidiobolus_coronatus_NRRL28638_v1.0 6 6
Malassezia_globosa_CBS_7966_ 10 10
Sporisorium_reilianum_22 5 5
Ustilago_maydis_ 5 5
Wallemia_sebi_v1.0 4 4
Mixia_osmundae_IAM_14324_v1.0 4 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 7 7
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 6 6
Sporobolomyces_roseus_IAM_13481_ 6 6
Microbotryum_violaceum_22 4 4
Sphaerobolus_stellatus_v1.0 4 4
Piloderma_croceum_F_1598_v1.0 9 9
Serpula_lacrymans_var._lacrymans_S7.9_ 4 4
Coniophora_puteana 5 5
Hydnomerulius_pinastri_v2.0 5 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 6 6
Pisolithus_microcarpus_441_v1.0 6 6
Pisolithus_tinctorius_Marx_270_v1.0 6 6
Scleroderma_citrinum_Foug_A_v1.0 5 5
Coprinopsis_cinerea_okayama7_130_v3 5 5
Pleurotus_ostreatus_   (Oyster mushroom)   5 5
Amanita_thiersii_Skay4041_v1.0 5 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   5 5
Galerina_marginata_v1.0 18 18
Hebeloma_cylindrosporum_h7_v2.0 6 6
Laccaria_bicolor_S238N-H82_ 6 6
Agaricus_bisporus_var._bisporus_ 7 6
Schizophyllum_commune_ 6 6
Stereum_hirsutum_FP-91666_SS1__v1.0 5 5
Heterobasidion_annosum_ 5 5
Gloeophyllum_trabeumv1.0 5 5
Punctularia_strigosozonata_v1.0 4 4
Phanerochaete_chrysosporium_RP-78_2.1 4 4
Sebacina_vermifera_MAFF_305830_v1.0 10 10
Fomitiporia_mediterranea_v1.0 6 6
Tulasnella_calospora_AL13/4D_v1.0 4 4
Postia_placenta_ 6 6
Wolfiporia_cocos_MD-104_SS10__v1.0 4 4
Fomitopsis_pinicolav1.0 4 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4 4
Trametes_versicolor_v1.0 4 4
Dichomitus_squalens 4 4
Tremella_mesenterica_   (Witches' butter)   4 4
Apiospora_montagnei_NRRL_25634_v1.0 6 6
Daldinia_eschscholzii_EC12_v1.0 6 6
Magnaporthe_poae_ATCC_64411_22 4 4
Magnaporthe_grisea_70-15_ 6 6
Podospora_anserina_ 6 6
Sporotrichum_thermophile_ATCC_42464_ 6 6
Thielavia_terrestris_NRRL_8126_ 6 6
Chaetomium_globosum_CBS_148.51_ 7 6
Neurospora_tetrasperma_ 7 6
Neurospora_discreta_FGSC_8579_ 7 6
Neurospora_crassa_OR74A_ 7 6
Cryphonectria_parasitica_   (Chestnut blight fungus)   6 6
Verticillium_albo-atrum_VaMs.102_ 6 6
Verticillium_dahliae_VdLs.17_ 6 6
Acremonium_alcalophilumv_1.0 6 6
Glomerella_graminicola_22 6 6
Fusarium_graminearum_ 6 6
Nectria_haematococca_mpVI_ 6 6
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6 6
Fusarium_verticillioides_7600_ 6 6
Trichoderma_asperellum_CBS_433.97_v1.0 6 6
Trichoderma_atroviride_ 6 6
Trichoderma_citrinoviride_v1.0 6 6
Trichoderma_reesei_1.2 6 6
Trichoderma_virens_Gv29-8_ 6 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 6 6
Trichoderma_harzianum_CBS_226.95_v1.0 6 6
Amorphotheca_resinae_v1.0   (Creosote fungus)   6 6
Botrytis_cinerea_B05.10_ 6 6
Sclerotinia_sclerotiorum_ 6 6
Blumeria_graminis_22 6 6
Didymella_exigua_CBS_183.55_v1.0 5 5
Leptosphaeria_maculans_22 6 6
Setosphaeria_turcica_v1.0 5 5
Cochliobolus_miyabeanus_ATCC_44560_v1.0 5 5
Cochliobolus_victoriae_FI3_v1.0 5 5
Cochliobolus_carbonum_26-R-13_v1.0 5 5
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   5 5
Alternaria_brassicicola_ 5 5
Cochliobolus_lunatus_m118_v2.0 5 5
Pyrenophora_teres_f._teres_22 5 5
Pyrenophora_tritici-repentis_ 5 5
Stagonospora_nodorum_ 5 5
Mycosphaerella_graminicola_IPO323_ 7 7
Zasmidium_cellare_ATCC_36951_v1.0 6 6
Septoria_musiva_v1.0 6 6
Mycosphaerella_fijiensis_CIRAD86_ 4 4
Dothistroma_septosporum 6 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 6 6
Ajellomyces_dermatitidis_SLH14081_ 6 6
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 6 6
Microsporum_canis_CBS_113480_ 6 6
Arthroderma_benhamiae_CBS_112371_ 6 6
Trichophyton_equinum_CBS_127.97_ 5 5
Trichophyton_verrucosum_HKI_0517_ 6 6
Trichophyton_tonsurans_CBS_112818_ 6 6
Trichophyton_rubrum_CBS_118892_ 6 6
Paracoccidioides_brasiliensis_Pb18_ 6 6
Coccidioides_posadasii_RMSCC_3488_ 6 6
Coccidioides_immitis_RS_ 6 6
Uncinocarpus_reesii_1704_ 6 6
Neosartorya_fischeri_NRRL_181_ 6 6
Penicillium_chrysogenum_Wisconsin_54-1255_ 6 6
Penicillium_chrysogenum_v1.0 6 6
Aspergillus_acidus_v1.0 6 6
Aspergillus_fumigatus_Af293 6 6
Aspergillus_brasiliensis_v1.0 6 6
Aspergillus_nidulans_FGSC_A4_ 6 6
Aspergillus_sydowii_v1.0 6 6
Aspergillus_versicolor_v1.0 6 6
Aspergillus_glaucus 6 6
Aspergillus_zonatus_v1.0 6 6
Aspergillus_carbonarius_ITEM_5010_ 6 6
Aspergillus_terreus_NIH2624_ 6 6
Aspergillus_tubingensis_v1.0 6 6
Aspergillus_wentii_v1.0 6 6
Aspergillus_oryzae_RIB40_ 6 6
Aspergillus_niger_22 6 6
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 6 6
Aspergillus_clavatus_NRRL_1_ 6 6
Penicillium_marneffei_ATCC_18224_ 6 6
Tuber_melanosporum_Mel28_22 6 6
Tuber_melanosporum_Vittad_   (Perigord truffle)   6 6
Pichia_membranifaciensv1.0 4 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5 5
Pichia_stipitis_CBS_6054_ 5 5
Candida_guilliermondii_ATCC_6260_ 5 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 5 5
Debaromyces_hansenii 5 5
Hansenula_polymorpha_v2.0 5 5
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 5
Candida_dubliniensis_CD36_ 5 5
Candida_tropicalis_MYA-3404_ 5 5
Candida_parapsilosis_ 6 6
Candida_albicans_SC5314 5 5
Wickerhamomyces_anomalus 5 5
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 4 4
Yarrowia_lipolytica_CLIB122 6 6
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 5
Candida_lusitaniae_ATCC_42720_ 5 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 5 5
Pichia_pastoris_GS115_ 5 5
Vanderwaltozyma_polyspora_DSM_70294_ 5 5
Candida_glabrata_CBS138 5 5
Kluyveromyces_thermotolerans_CBS_6340 5 5
Lachancea_kluyveri_ 5 5
Kluyveromyces_waltii 5 5
Ashbya_gossypii_ATCC_10895_ 5 5
Dekkera_bruxellensis_CBS_2499_v2.0 5 5
Zygosaccharomyces_rouxii_ 5 5
Saccharomyces_mikatae_MIT 6 6
Saccharomyces_paradoxus_MIT 5 5
Saccharomyces_cerevisiae_76   (Baker's yeast)   5 5
Saccharomyces_bayanus_MIT 5 5
Kluyveromyces_lactis 5 5
Schizosaccharomyces_cryophilus_OY26_22 7 7
Schizosaccharomyces_octosporus_yFS286_ 7 7
Schizosaccharomyces_japonicus_yFS275_ 8 8
Schizosaccharomyces_pombe   (Fission yeast)   7 7
Catenaria_anguillulae_PL171_v1.0 7 7
Allomyces_macrogynus_ATCC_38327_ 17 17
Mortierella_verticillata_NRRL_6337_ 10 10
Phycomyces_blakesleeanus_ 9 9
Rhizopus_oryzae_RA_99-880_ 12 12
Mucor_circinelloides_ 10 10
Spizellomyces_punctatus_DAOM_BR117_ 7 7
Dictyostelium_discoideum 6 6
Dictyostelium_purpureum_ 6 6
Entamoeba_dispar_1.2 6 6
Entamoeba_invadens_1.2 5 5
Entamoeba_histolytica_1 6 6
Selaginella_moellendorffii_ 19 19
Pinus_taeda   (Loblolly pine)   28 23
Picea_abies   (Norway spruce)   6 6
Eucalyptus_grandis_v201   (Rose gum)   13 13
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7 7
Gossypium_raimondii_v221 44 44
Citrus_clementina_v165 16 16
Citrus_sinensis_v154   (Sweet orange)   22 22
Thellungiella_halophila_v173 11 11
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   11 11
Capsella_rubella_v183 9 9
Arabidopsis_lyrata_   (Lyrate rockcress)   10 10
Arabidopsis_thaliana_10   (Thale cress)   12 12
Carica_papaya_   (Papaya)   9 9
Medicago_truncatula_   (Barrel medic)   27 27
Phaseolus_vulgaris_v186   (French bean)   18 18
Glycine_max_v109   (Soybean)   28 28
Cucumis_sativus_v122   (Cucumber)   8 8
Fragaria_vesca_   (Wild strawberry)   8 8
Malus_domestica_v196   (Apple)   22 20
Prunus_persica_v139   (Peach)   7 7
Linum_usitatissimum_v200   (Flax)   14 14
Manihot_esculenta_v147   (Cassava)   24 24
Populus_trichocarpa_v156   (Black cottonwood)   17 17
Vitis_vinifera_   (Wine grape)   9 9
Mimulus_guttatus_v140   (Spotted monkey flower)   8 8
Solanum_lycopersicum_v.2.3   (Tomato)   20 20
Solanum_tuberosum_   (Potato)   26 25
Actinidia_chinensis_Hongyang_ 18 17
Aquilegia_coerulea_v195 21 21
Triticum_urartu_22 5 5
Triticum_aestivum_22   (Bread wheat)   31 31
Aegilops_tauschii_22 11 11
Brachypodium_distachyon_ 13 13
Oryza_barthii_22   (African wild rice)   8 8
Oryza_meridionalis_22 14 14
Oryza_glumaepatula_22 13 13
Oryza_glaberrima   (African rice)   8 8
Oryza_punctata_22 9 8
Oryza_nivara_22 11 11
Oryza_brachyantha_22   (Malo sina)   8 8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   11 11
Oryza_sativa_v193   (Rice)   11 11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   15 14
Zea_mays_subsp._mays_   (Maize)   21 21
Zea_mays_v181   (Maize)   21 21
Sorghum_bicolor_   (Sorghum)   12 10
Setaria_italica_v164   (Foxtail millet)   11 11
Panicum_virgatum_v202   (Switchgrass)   23 23
Musa_balbisiana   (Balbis banana)   12 11
Musa_acuminata_22   (Wild Malaysian banana)   15 15
Amborella_trichopoda_22 8 8
Physcomitrella_patens 12 12
Ostreococcus_sp._RCC809_ 6 6
Ostreococcus_lucimarinus_CCE9901_ 8 8
Ostreococcus_tauri_ 5 5
Bathycoccus_prasinos_ 5 4
Micromonas_sp._RCC299_ 10 9
Micromonas_pusilla_CCMP1545_v3.0 10 10
Coccomyxa_subellipsoidea_sp._C-169_v2 8 8
Asterochloris_sp._Cgr/DA1pho_v1.0 9 8
Chlorella_variabilis_sp._NC64A_ 8 8
Chlorella_vulgaris_ 8 8
Volvox_carteri_f._nagariensis_ 13 11
Volvox_carteri_v199 11 10
Chlamydomonas_reinhardtii_4.0 13 11
Cyanidioschyzon_merolae_strain_10D_22 4 4
Cyanidioschyzon_merolae 4 4
Porphyridium_purpureum_02_2012 4 4
Thecamonas_trahens_ATCC_50062_ 22 22
Bigelowiella_natans_CCMP2755_22 33 33
Giardia_lamblia_2.3 6 6
Cyanophora_paradoxa_ 21 21
Leishmania_mexicana_2.4 13 13
Leishmania_major_strain_Friedlin_ 14 13
Leishmania_infantum_JPCM5_2.4 12 12
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 13 13
Trypanosoma_vivax_ 11 11
Trypanosoma_cruzi_strain_CL_Brener 7 7
Trypanosoma_congolense_2.4 12 12
Trypanosoma_brucei_TREU927_v4.1 11 11
Trypanosoma_brucei_gambiense_v4.1 11 11
Ectocarpus_siliculosus 19 19
Aureococcus_anophagefferens_ 20 20
Albugo_laibachii_22 16 16
Pythium_iwayamai_DAOM_BR242034_22 67 66
Pythium_arrhenomanes_ATCC_12531_22 45 41
Pythium_ultimum_v1.7-2 60 58
Pythium_aphanidermatum_DAOM_BR444_22 41 40
Pythium_vexans_DAOM_BR484_22 38 36
Pythium_irregulare_DAOM_BR486_22 58 56
Phytophthora_ramorum_1.1   (Sudden oak death agent)   32 30
Phytophthora_sojae_1.1 31 30
Phytophthora_infestans_T30-4_ 37 36
Phytophthora_capsici_ 35 35
Hyaloperonospora_arabidopsidis_22 17 16
Phaeodactylum_tricornutumCCAP_1055/1 10 10
Fragilariopsis_cylindrus 14 14
Thalassiosira_pseudonana_CCMP1335 9 9
Perkinsus_marinus_ATCC_50983_ 10 10
Paramecium_tetraurelia_ 36 35
Tetrahymena_thermophila_SB210_1_ 17 17
Ichthyophthirius_multifiliis_strain_G5_ 20 20
Cryptosporidium_hominis 5 5
Cryptosporidium_muris 6 6
Cryptosporidium_parvum_Iowa_II 6 5
Neospora_caninum 10 9
Toxoplasma_gondii_VEG 10 9
Toxoplasma_gondii_ME49 10 9
Toxoplasma_gondii_GT1 10 9
Babesia_bovis_T2Bo_ 8 8
Theileria_parva__ 4 4
Theileria_annulata 4 4
Plasmodium_falciparum_3D7_ 6 4
Plasmodium_vivax_SaI-1_7.0 6 4
Plasmodium_knowlesi_strain_H_ 7 4
Plasmodium_yoelii_ssp._yoelii_1_ 7 5
Plasmodium_chabaudi_ 6 4
Plasmodium_berghei_ANKA_ 6 4
Naegleria_gruberi_ 11 11
Trichomonas_vaginalis_ 67 67
Guillardia_theta_CCMP2712_v1.0_ 28 26
Emiliania_huxleyi_CCMP1516_ 35 35
Waddlia_chondrophila_WSU_86-1044 1 1
Simkania_negevensis_Z 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Western clawed frog)   47 47
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   34 34
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   17 16
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   11 11
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   10 10
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 4 4
Cryptococcus_neoformans_JEC21_ 3 3
Ajellomyces_dermatitidis_ER-3_ 6 6
Histoplasma_capsulatum_H143 6 6
Histoplasma_capsulatum_H88 6 6
Histoplasma_capsulatum_G186AR 7 7
Paracoccidioides_brasiliensis_Pb01_ 6 6
Paracoccidioides_brasiliensis_Pb03_ 6 6
Coccidioides_posadasii_str._Silveira_ 6 6
Coccidioides_immitis_RMSCC_3703_ 4 4
Coccidioides_immitis_RMSCC_2394_ 6 6
Coccidioides_immitis_H538.4_ 5 5
Aspergillus_fumigatus_A1163_ 6 6
Candida_albicans_WO-1_ 5 5
Saccharomyces_cerevisiae_UC5 3 3
Saccharomyces_cerevisiae_PW5 4 4
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 2 2
Saccharomyces_cerevisiae_YJM269 4 4
Saccharomyces_cerevisiae_T7 5 5
Saccharomyces_cerevisiae_FostersB 3 3
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_VL3 4 4
Saccharomyces_cerevisiae_Vin13 4 4
Saccharomyces_cerevisiae_LalvinQA23 3 3
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 5 5
Saccharomyces_cerevisiae_W303 5 5
Saccharomyces_cerevisiae_JAY291 5 5
Saccharomyces_cerevisiae_AWRI1631 2 2
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_YJM789_ 5 5
Saccharomyces_cerevisiae_YJM789 5 5
Saccharomyces_cerevisiae_RM11-1a 4 4
Saccharomyces_cerevisiae_RM11-1a_ 3 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   5 5
Schizosaccharomyces_pombe_972h-_ 7 7
Batrachochytrium_dendrobatidis_JEL423_ 6 6
Batrachochytrium_dendrobatidis_JAM81_ 6 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7 7
Hordeum_vulgare_22   (Domesticated barley)   29 29
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8 8
Trypanosoma_brucei_Lister_427_v4.1 11 11
Neospora_caninum_Nc-Liverpool_6.2 10 9
Plasmodium_falciparum_HB3_ 6 4
Plasmodium_falciparum_Dd2_ 5 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   30 30
Pan_troglodytes_69_2.1.4   (Chimpanzee)   26 26
Gorilla_gorilla_69_3.1   (Western gorilla)   29 29
Pongo_abelii_69_2   (Sumatran orangutan)   27 27
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   26 26
Macaca_mulatta_69_1   (Rhesus monkey)   28 28
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   28 28
Otolemur_garnettii_69_3   (Small-eared galago)   27 27
Microcebus_murinus_69_1   (Gray mouse lemur)   28 23
Tarsius_syrichta_69_1   (Philippine tarsier)   33 28
Rattus_norvegicus_69_3.4   (Norway rat)   28 28
Mus_musculus_69_38   (House mouse)   27 27
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   23 23
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   26 25
Cavia_porcellus_69_3   (Domestic guinea pig)   27 27
Oryctolagus_cuniculus_69_2   (Rabbit)   27 27
Ochotona_princeps_69   (American pika)   30 28
Tupaia_belangeri_69   (Northern tree shrew)   33 27
Sus_scrofa_69_10.2   (Pig)   29 29
Bos_taurus_69_3.1   (Cattle)   28 28
Vicugna_pacos_69_1   (Alpaca)   29 26
Tursiops_truncatus_69_1   (Bottlenosed dolphin)   32 28
Mustela_putorius_furo_69_1.0   (Domestic ferret)   28 28
Ailuropoda_melanoleuca_69_1   (Giant panda)   29 29
Canis_familiaris_69_3.1   (Dog)   28 28
Felis_catus_69   (Domestic cat)   29 22
Equus_caballus_69_2   (Horse)   28 28
Myotis_lucifugus_69_2.0   (Little brown bat)   29 29
Pteropus_vampyrus_69_1   (Large flying fox)   30 28
Sorex_araneus_69_1   (European shrew)   35 26
Erinaceus_europaeus_69   (Western European hedgehog)   32 27
Procavia_capensis_69_1   (Cape rock hyrax)   32 28
Loxodonta_africana_69_3   (African savanna elephant)   29 29
Echinops_telfairi_69   (Small Madagascar hedgehog)   31 25
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   37 28
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   32 27
Macropus_eugenii_69_1.0   (Tammar wallaby)   28 24
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   27 27
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   27 27
Ornithorhynchus_anatinus_69_5   (Platypus)   34 33
Petromyzon_marinus_69_7.0   (Sea lamprey)   10 10
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   31 31
Meleagris_gallopavo_69_2   (Turkey)   26 26
Gallus_gallus_69_2   (Chicken)   30 30
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   27 27
Anolis_carolinensis_69_2.0   (Green anole)   26 26
Xenopus_tropicalis_69_4.2   (Western clawed frog)   26 26
Latimeria_chalumnae_69_1   (Coelacanth)   29 29
Gadus_morhua_69_1   (Atlantic cod)   41 38
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   36 36
Takifugu_rubripes_69_4   (Torafugu)   36 36
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   39 39
Oryzias_latipes_69_1   (Japanese medaka)   38 38
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   34 34
Oreochromis_niloticus_69_1.0   (Nile tilapia)   38 38
Danio_rerio_69_9   (Zebrafish)   40 40
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   17 17
Ciona_intestinalis_69   (Vase tunicate)   16 16
Drosophila_melanogaster_69_5   (Fruit fly)   14 14
Caenorhabditis_elegans_69_215   (Roundworm)   9 9
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5 5
Arabidopsis_thaliana_10   (Thale cress)   7 7

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens__(NCBI_version)   (Human)   45 45
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   27 27
Heliconius_numata__(Incomplete_geno) 8 8
Loa_loa_v3.3_(Request)   (Eye worm)   12 12
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   16 16
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   11 11
Moniliophthora_perniciosa_FA553__(Genome_survey) 6 6
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 2 2
Lotus_japonicus__(Early_assembly) 17 17
Malus_x_domestica_(Duplicate)   (Apple)   22 20
Ricinus_communis__(Early_assembly)   (Castor bean)   8 8
Nicotiana_benthamiana_0.4.4_(Early_draft) 31 30
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   18 18
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   20 20
Phoenix_dactylifera__(Early_draft)   (Date palm)   18 17
PDB_chains_(SCOP_1.75)_(PDB) 2 2
UniProt__viral_sequences_(Viral) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 27 27
TargetDB__(Targets) 34 34
NCBI_viral_sequences_(Viral) 5 5
Uniprot_2014_06 7923 7798
Protozoadb_2010_08_(Protozoadb) 367 345
STRING_v9.0.5_(STRING) 1791 1750

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]