SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for F-box domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a F-box domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   192 192
Pan_troglodytes_76_2.1.4   (Chimpanzee)   59 59
Gorilla_gorilla_76_3.1   (Western gorilla)   81 81
Pongo_abelii_76_2   (Sumatran orangutan)   63 63
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   68 68
Papio_anubis_76   (Olive baboon)   67 67
Macaca_mulatta_76_1   (Rhesus monkey)   89 89
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   124 124
Otolemur_garnettii_76_3   (Small-eared galago)   67 67
Microcebus_murinus_76_1   (Gray mouse lemur)   39 39
Rattus_norvegicus_76_5.0   (Norway rat)   64 64
Mus_musculus_76_38   (House mouse)   162 162
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   48 48
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   55 55
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   60 60
Cavia_porcellus_76_3   (Domestic guinea pig)   61 61
Oryctolagus_cuniculus_76_2   (Rabbit)   59 59
Ochotona_princeps_76   (American pika)   45 45
Tupaia_belangeri_76   (Northern tree shrew)   29 29
Sus_scrofa_76_10.2   (Pig)   59 59
Bos_taurus_76_3.1   (Cattle)   71 71
Ovis_aries_76_3.1   (Sheep)   68 68
Vicugna_pacos_76_1   (Alpaca)   30 30
Tursiops_truncatus_76_1   (Bottlenose dolphin)   51 51
Mustela_putorius_furo_76_1.0   (Domestic ferret)   60 60
Ailuropoda_melanoleuca_76_1   (Giant panda)   64 64
Canis_familiaris_76_3.1   (Dog)   73 73
Felis_catus_76_6.2   (Domestic cat)   61 61
Equus_caballus_76_2   (Horse)   56 56
Myotis_lucifugus_76_2.0   (Little brown bat)   141 141
Pteropus_vampyrus_76_1   (Large flying fox)   57 57
Sorex_araneus_76_1   (European shrew)   34 34
Erinaceus_europaeus_76   (Western European hedgehog)   44 44
Procavia_capensis_76_1   (Cape rock hyrax)   41 41
Loxodonta_africana_76_3   (African savanna elephant)   78 78
Echinops_telfairi_76   (Small Madagascar hedgehog)   35 35
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   64 64
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   26 26
Macropus_eugenii_76_1.0   (Tammar wallaby)   34 34
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   57 57
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   65 65
Ornithorhynchus_anatinus_76_5   (Platypus)   45 45
Saccoglossus_kowalevskii_v3.0 110 110
Petromyzon_marinus_76_7.0   (Sea lamprey)   28 28
Meleagris_gallopavo_76_2   (Turkey)   44 44
Gallus_gallus_76_4   (Chicken)   50 50
Anas_platyrhynchos_76_1.0   (Mallard)   45 45
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   51 51
Ficedula_albicollis_76_1.0   (Collared flycatcher)   51 51
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   60 60
Anolis_carolinensis_76_2.0   (Green anole)   57 57
Xenopus_laevis_   (African clawed frog)   104 104
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   66 66
Latimeria_chalumnae_76_1   (Coelacanth)   74 74
Lepisosteus_oculatus_76   (Spotted gar)   75 75
Gadus_morhua_76_1   (Atlantic cod)   60 60
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   63 63
Takifugu_rubripes_76_4   (Torafugu)   107 107
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   73 73
Oryzias_latipes_76_1   (Japanese medaka)   64 64
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   72 72
Poecilia_formosa_76   (Amazon molly)   72 72
Oreochromis_niloticus_76_1.0   (Nile tilapia)   87 87
Astyanax_mexicanus_76   (Mexican tetra)   61 61
Danio_rerio_76_9   (Zebrafish)   121 121
Oikopleura_dioica 26 26
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   26 26
Ciona_intestinalis_76   (Vase tunicate)   30 30
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   56 56
Adineta_vaga 212 211
Octopus_bimaculoides_280 55 55
Crassostrea_gigas_22   (Pacific oyster)   52 52
Lottia_gigantea_   (Owl limpet)   59 59
Helobdella_robusta_ 33 33
Capitella_sp._I_ 55 55
Danaus_plexippus_OGS1.0   (Monarch butterfly)   34 33
Heliconius_melpomene_   (Postman butterfly)   29 29
Bombyx_mori_   (Domestic silkworm)   14 14
Nasonia_vitripennis_   (Jewel wasp)   35 33
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   44 44
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   26 26
Linepithema_humile_v1.1   (Argentine ant)   30 30
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   30 30
Solenopsis_invicta_v.2.2.3   (Red fire ant)   41 41
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   28 28
Atta_cephalotes_v1.1 27 27
Camponotus_floridanus_v3.3   (Florida carpenter ant)   30 30
Lucilia_cuprina   (Australian sheep blowfly)   26 26
Drosophila_grimshawi_1.3 28 28
Drosophila_willistoni_1.3 32 32
Drosophila_pseudoobscura_2.13 27 27
Drosophila_persimilis_1.3 28 28
Drosophila_suzukii 31 28
Drosophila_yakuba_1.3 25 25
Drosophila_simulans_1.3 27 27
Drosophila_sechellia_1.3 26 26
Drosophila_melanogaster_76_5   (Fruit fly)   56 56
Drosophila_erecta_1.3 25 25
Drosophila_ananassae_1.3 28 28
Drosophila_virilis_1.2 29 29
Drosophila_mojavensis_1.3 28 28
Megaselia_scalaris_22 10 10
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   46 46
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   150 149
Anopheles_darlingi_22   (American malaria mosquito)   27 25
Anopheles_gambiae_49_3j   (African malaria mosquito)   33 33
Tribolium_castaneum_3.0   (Red flour beetle)   33 33
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   31 31
Acyrthosiphon_pisum_   (Pea aphid)   24 24
Rhodnius_prolixus_22 41 41
Daphnia_pulex_   (Common water flea)   70 70
Strigamia_maritima_22 36 36
Sarcoptes_scabiei 10 10
Tetranychus_urticae_   (Two-spotted spider mite)   82 82
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   43 43
Pristionchus_pacificus_ 69 69
Meloidogyne_incognita_   (Southern root-knot nematode)   110 105
Meloidogyne_hapla_ 56 56
Onchocerca_volvulus_22 35 35
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   35 35
Caenorhabditis_japonica_ 21 21
Caenorhabditis_brenneri_ 108 107
Caenorhabditis_remanei_ 125 122
Caenorhabditis_elegans_76_235   (Roundworm)   116 116
Caenorhabditis_briggsae_2 44 44
Trichinella_spiralis_22 19 19
Hymenolepis_microstoma_ 19 19
Echinococcus_multilocularis_ 17 17
Echinococcus_granulosus_ 16 16
Taenia_solium_   (Pork tapeworm)   17 17
Schistosoma_mansoni_ 29 29
Mnemiopsis_leidyi   (Sea walnut)   33 33
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 36 36
Nematostella_vectensis_1.0   (Starlet sea anemone)   72 72
Hydra_vulgaris 23 23
Amphimedon_queenslandica 32 32
Trichoplax_adhaerens_ 41 41
Proterospongia_sp._ATCC_50818_ 33 33
Monosiga_brevicollis_ 20 20
Sphaeroforma_arctica_JP610_ 38 38
Capsaspora_owczarzaki_ATCC_30864_ 36 34
Conidiobolus_coronatus_NRRL28638_v1.0 49 49
Mortierella_verticillata_NRRL_6337_ 188 188
Phycomyces_blakesleeanus_ 246 245
Rhizopus_oryzae_RA_99-880_ 46 46
Mucor_circinelloides_ 111 110
Rhizomucor_miehei_CAU432_ 83 83
Malassezia_globosa_CBS_7966_ 16 16
Sporisorium_reilianum_22 22 22
Ustilago_maydis_ 21 21
Mixia_osmundae_IAM_14324_v1.0 27 27
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 19 19
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 16 16
Melampsora_laricis-populina_ 17 17
Rhodotorula_graminis_WP1_v1.0 41 41
Sporobolomyces_roseus_IAM_13481_ 30 30
Microbotryum_violaceum_22 24 24
Wallemia_sebi_v1.0 17 17
Sphaerobolus_stellatus_v1.0 205 205
Piloderma_croceum_F_1598_v1.0 114 114
Serpula_lacrymans_var._lacrymans_S7.9_ 46 46
Coniophora_puteana 121 120
Hydnomerulius_pinastri_v2.0 78 78
Paxillus_rubicundulus_Ve08.2h10_v1.0 56 56
Pisolithus_microcarpus_441_v1.0 55 55
Pisolithus_tinctorius_Marx_270_v1.0 74 74
Scleroderma_citrinum_Foug_A_v1.0 100 99
Coprinopsis_cinerea_okayama7_130_v3 179 177
Pleurotus_ostreatus_   (Oyster mushroom)   116 115
Amanita_thiersii_Skay4041_v1.0 62 62
Amanita_muscaria_Koide_v1.0   (Fly agaric)   122 122
Galerina_marginata_v1.0 282 282
Hebeloma_cylindrosporum_h7_v2.0 197 197
Laccaria_bicolor_S238N-H82_ 119 118
Agaricus_bisporus_var._bisporus_ 85 85
Schizophyllum_commune_ 231 224
Stereum_hirsutum_FP-91666_SS1__v1.0 151 150
Heterobasidion_annosum_ 59 59
Gloeophyllum_trabeumv1.0 89 89
Punctularia_strigosozonata_v1.0 71 70
Sebacina_vermifera_MAFF_305830_v1.0 232 228
Fomitiporia_mediterranea_v1.0 84 84
Tulasnella_calospora_AL13/4D_v1.0 306 300
Postia_placenta_ 151 151
Wolfiporia_cocos_MD-104_SS10__v1.0 107 107
Fomitopsis_pinicolav1.0 135 134
Fomitopsis_pinicola_FP-58527_SS1_v3.0 151 151
Phanerochaete_chrysosporium_RP-78_2.1 91 90
Dichomitus_squalens 120 120
Trametes_versicolor_v1.0 189 188
Tremella_mesenterica_   (Witches' butter)   18 18
Daldinia_eschscholzii_EC12_v1.0 53 53
Apiospora_montagnei_NRRL_25634_v1.0 75 75
Magnaporthe_poae_ATCC_64411_22 37 37
Magnaporthe_grisea_70-15_ 44 44
Podospora_anserina_ 41 41
Sporotrichum_thermophile_ATCC_42464_ 39 39
Thielavia_terrestris_NRRL_8126_ 40 40
Chaetomium_globosum_CBS_148.51_ 37 37
Neurospora_tetrasperma_ 35 35
Neurospora_discreta_FGSC_8579_ 33 33
Neurospora_crassa_OR74A_ 36 36
Cryphonectria_parasitica_   (Chestnut blight fungus)   33 33
Verticillium_albo-atrum_VaMs.102_ 21 21
Verticillium_dahliae_VdLs.17_ 36 36
Acremonium_alcalophilumv_1.0 30 30
Glomerella_graminicola_22 34 34
Fusarium_graminearum_ 51 51
Nectria_haematococca_mpVI_ 75 75
Fusarium_oxysporum_f._sp._lycopersici_4286_ 36 36
Fusarium_verticillioides_7600_ 38 38
Trichoderma_asperellum_CBS_433.97_v1.0 54 54
Trichoderma_atroviride_ 55 55
Trichoderma_citrinoviride_v1.0 40 40
Trichoderma_reesei_1.2 38 38
Trichoderma_virens_Gv29-8_ 46 46
Trichoderma_longibrachiatum_ATCC_18648_v1.0 38 38
Trichoderma_harzianum_CBS_226.95_v1.0 47 47
Amorphotheca_resinae_v1.0   (Creosote fungus)   44 44
Botrytis_cinerea_B05.10_ 30 30
Sclerotinia_sclerotiorum_ 37 37
Blumeria_graminis_22 25 25
Didymella_exigua_CBS_183.55_v1.0 41 41
Leptosphaeria_maculans_22 35 35
Setosphaeria_turcica_v1.0 55 55
Cochliobolus_miyabeanus_ATCC_44560_v1.0 52 52
Cochliobolus_victoriae_FI3_v1.0 57 57
Cochliobolus_carbonum_26-R-13_v1.0 54 54
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   33 33
Alternaria_brassicicola_ 30 30
Cochliobolus_lunatus_m118_v2.0 54 54
Pyrenophora_teres_f._teres_22 42 42
Pyrenophora_tritici-repentis_ 48 48
Stagonospora_nodorum_ 63 62
Mycosphaerella_graminicola_IPO323_ 59 58
Zasmidium_cellare_ATCC_36951_v1.0 107 107
Dothistroma_septosporum 57 57
Septoria_musiva_v1.0 47 47
Mycosphaerella_fijiensis_CIRAD86_ 70 70
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 49 49
Paracoccidioides_brasiliensis_Pb18_ 35 35
Coccidioides_posadasii_RMSCC_3488_ 45 45
Coccidioides_immitis_RS_ 50 50
Ajellomyces_dermatitidis_SLH14081_ 42 42
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 36 36
Microsporum_canis_CBS_113480_ 41 41
Trichophyton_equinum_CBS_127.97_ 32 32
Trichophyton_verrucosum_HKI_0517_ 39 39
Arthroderma_benhamiae_CBS_112371_ 37 37
Trichophyton_tonsurans_CBS_112818_ 38 38
Trichophyton_rubrum_CBS_118892_ 43 43
Uncinocarpus_reesii_1704_ 33 33
Aspergillus_zonatus_v1.0 45 45
Penicillium_chrysogenum_Wisconsin_54-1255_ 67 67
Penicillium_chrysogenum_v1.0 61 61
Aspergillus_acidus_v1.0 67 67
Aspergillus_fumigatus_Af293 40 40
Aspergillus_brasiliensis_v1.0 70 70
Aspergillus_nidulans_FGSC_A4_ 42 42
Aspergillus_sydowii_v1.0 83 83
Aspergillus_versicolor_v1.0 59 59
Aspergillus_glaucus 65 65
Aspergillus_carbonarius_ITEM_5010_ 53 53
Neosartorya_fischeri_NRRL_181_ 45 45
Aspergillus_terreus_NIH2624_ 44 44
Aspergillus_tubingensis_v1.0 59 59
Aspergillus_wentii_v1.0 72 72
Aspergillus_oryzae_RIB40_ 43 43
Aspergillus_niger_22 58 58
Aspergillus_niger_ATCC_1015_ 50 50
Aspergillus_flavus_NRRL3357_ 43 43
Aspergillus_clavatus_NRRL_1_ 45 45
Penicillium_marneffei_ATCC_18224_ 39 39
Tuber_melanosporum_Mel28_22 39 39
Tuber_melanosporum_Vittad_   (Perigord truffle)   56 56
Hansenula_polymorpha_v2.0 7 7
Dekkera_bruxellensis_CBS_2499_v2.0 10 10
Pichia_membranifaciensv1.0 9 9
Candida_tanzawaensis_NRRL_Y-17324__v1.0 13 13
Candida_dubliniensis_CD36_ 17 17
Candida_tropicalis_MYA-3404_ 20 20
Candida_parapsilosis_ 15 15
Candida_albicans_SC5314 19 19
Lodderomyces_elongisporus_NRRL_YB-4239_ 13 13
Babjeviella_inositovora_NRRL_Y-12698_v1.0 16 16
Pichia_stipitis_CBS_6054_ 16 16
Candida_guilliermondii_ATCC_6260_ 14 14
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 12 12
Debaromyces_hansenii 17 17
Wickerhamomyces_anomalus 18 18
Pichia_pastoris_GS115_ 10 10
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 65 65
Candida_lusitaniae_ATCC_42720_ 17 17
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 17 17
Vanderwaltozyma_polyspora_DSM_70294_ 12 12
Candida_glabrata_CBS138 12 12
Kluyveromyces_thermotolerans_CBS_6340 13 13
Lachancea_kluyveri_ 15 15
Kluyveromyces_waltii 15 15
Ashbya_gossypii_ATCC_10895_ 11 11
Zygosaccharomyces_rouxii_ 11 11
Saccharomyces_mikatae_MIT 8 8
Saccharomyces_paradoxus_MIT 11 11
Saccharomyces_cerevisiae_76   (Baker's yeast)   11 11
Saccharomyces_bayanus_MIT 10 10
Kluyveromyces_lactis 16 16
Schizosaccharomyces_cryophilus_OY26_22 11 11
Schizosaccharomyces_octosporus_yFS286_ 11 11
Schizosaccharomyces_japonicus_yFS275_ 10 10
Schizosaccharomyces_pombe   (Fission yeast)   12 12
Catenaria_anguillulae_PL171_v1.0 49 48
Allomyces_macrogynus_ATCC_38327_ 57 57
Spizellomyces_punctatus_DAOM_BR117_ 77 77
Dictyostelium_discoideum 46 45
Dictyostelium_purpureum_ 46 45
Entamoeba_dispar_1.2 14 14
Entamoeba_invadens_1.2 27 27
Entamoeba_histolytica_1 14 14
Selaginella_moellendorffii_ 304 302
Pinus_taeda   (Loblolly pine)   220 207
Picea_abies   (Norway spruce)   185 184
Eucalyptus_grandis_v201   (Rose gum)   344 344
Theobroma_cacao_B97-61/B2_v1   (Cacao)   332 318
Gossypium_raimondii_v221 599 599
Citrus_clementina_v165 400 399
Citrus_sinensis_v154   (Sweet orange)   422 419
Thellungiella_halophila_v173 778 778
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   763 757
Capsella_rubella_v183 871 870
Arabidopsis_lyrata_   (Lyrate rockcress)   762 754
Arabidopsis_thaliana_10   (Thale cress)   731 731
Carica_papaya_   (Papaya)   151 151
Medicago_truncatula_   (Barrel medic)   1414 1401
Phaseolus_vulgaris_v186   (French bean)   288 287
Glycine_max_v109   (Soybean)   526 526
Cucumis_sativus_v122   (Cucumber)   207 207
Fragaria_vesca_   (Wild strawberry)   857 821
Malus_domestica_v196   (Apple)   650 633
Prunus_persica_v139   (Peach)   397 396
Linum_usitatissimum_v200   (Flax)   491 487
Manihot_esculenta_v147   (Cassava)   271 271
Populus_trichocarpa_v156   (Black cottonwood)   374 374
Vitis_vinifera_   (Wine grape)   144 142
Mimulus_guttatus_v140   (Spotted monkey flower)   731 728
Solanum_lycopersicum_v.2.3   (Tomato)   335 329
Solanum_tuberosum_   (Potato)   644 644
Actinidia_chinensis_Hongyang_ 292 284
Aquilegia_coerulea_v195 710 705
Triticum_urartu_22 857 846
Triticum_aestivum_22   (Bread wheat)   723 719
Aegilops_tauschii_22 1307 1280
Brachypodium_distachyon_   (Stiff brome)   663 657
Oryza_barthii_22   (African wild rice)   831 680
Oryza_meridionalis_22 732 633
Oryza_glumaepatula_22 1055 864
Oryza_glaberrima   (African rice)   536 535
Oryza_punctata_22 683 604
Oryza_nivara_22 1017 857
Oryza_brachyantha_22   (Malo sina)   248 244
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   857 847
Oryza_sativa_v193   (Rice)   850 840
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   221 221
Panicum_virgatum_v202   (Switchgrass)   1155 1148
Setaria_italica_v164   (Foxtail millet)   753 746
Zea_mays_subsp._mays_   (Maize)   357 357
Zea_mays_v181   (Maize)   412 412
Sorghum_bicolor_   (Sorghum)   634 614
Musa_balbisiana   (Balbis banana)   293 293
Musa_acuminata_22   (Wild Malaysian banana)   207 207
Amborella_trichopoda_22 192 192
Physcomitrella_patens 207 207
Coccomyxa_subellipsoidea_sp._C-169_v2 19 19
Asterochloris_sp._Cgr/DA1pho_v1.0 16 16
Chlorella_variabilis_sp._NC64A_ 60 58
Chlorella_vulgaris_ 13 13
Volvox_carteri_f._nagariensis_ 41 41
Volvox_carteri_v199 44 44
Chlamydomonas_reinhardtii_4.0 42 42
Ostreococcus_sp._RCC809_ 11 11
Ostreococcus_lucimarinus_CCE9901_ 8 8
Ostreococcus_tauri_ 11 11
Bathycoccus_prasinos_ 12 12
Micromonas_sp._RCC299_ 28 28
Micromonas_pusilla_CCMP1545_v3.0 39 39
Cyanidioschyzon_merolae_strain_10D_22 5 5
Cyanidioschyzon_merolae 5 5
Porphyridium_purpureum_02_2012 19 19
Thecamonas_trahens_ATCC_50062_ 67 66
Bigelowiella_natans_CCMP2755_22 30 30
Cyanophora_paradoxa_ 237 235
Leishmania_mexicana_2.4 9 9
Leishmania_major_strain_Friedlin_ 8 8
Leishmania_infantum_JPCM5_2.4 8 8
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 7 7
Trypanosoma_vivax_ 11 11
Trypanosoma_cruzi_strain_CL_Brener 11 11
Trypanosoma_congolense_2.4 9 9
Trypanosoma_brucei_gambiense_v4.1 13 13
Trypanosoma_brucei_TREU927_v4.1 10 10
Ectocarpus_siliculosus 21 21
Aureococcus_anophagefferens_ 14 14
Albugo_laibachii_22 11 11
Pythium_iwayamai_DAOM_BR242034_22 19 19
Pythium_arrhenomanes_ATCC_12531_22 22 22
Pythium_ultimum_v1.7-2 20 20
Pythium_aphanidermatum_DAOM_BR444_22 22 22
Pythium_irregulare_DAOM_BR486_22 28 28
Pythium_vexans_DAOM_BR484_22 24 24
Phytophthora_ramorum_1.1   (Sudden oak death agent)   25 25
Phytophthora_sojae_1.1 28 28
Phytophthora_infestans_T30-4_ 31 31
Phytophthora_capsici_ 22 22
Hyaloperonospora_arabidopsidis_22 14 14
Phaeodactylum_tricornutumCCAP_1055/1 17 17
Fragilariopsis_cylindrus 48 47
Thalassiosira_pseudonana_CCMP1335 19 18
Perkinsus_marinus_ATCC_50983_ 6 6
Paramecium_tetraurelia_ 10 10
Tetrahymena_thermophila_SB210_1_ 11 11
Ichthyophthirius_multifiliis_strain_G5_ 3 3
Cryptosporidium_muris 4 4
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 7 7
Toxoplasma_gondii_VEG 8 8
Toxoplasma_gondii_ME49 7 7
Toxoplasma_gondii_GT1 6 6
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 3 3
Symbiodinium_minutum_clade_B1_v1.2 29 29
Naegleria_gruberi_ 272 272
Trichomonas_vaginalis_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 31 31
Emiliania_huxleyi_CCMP1516_ 133 133
Candidatus_Amoebophilus_asiaticus_5a2 15 15
Waddlia_chondrophila_WSU_86-1044 2 2
Candidatus_Protochlamydia_amoebophila_UWE25 12 11
Parachlamydia_acanthamoebae_UV-7 26 26
Babela_massiliensis 1 1
Burkholderia_rhizoxinica_HKI_454 9 9
Ralstonia_solanacearum_CFBP2957 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Xanthomonas_albilineans_GPE_PC73 1 1
Coxiella_burnetii_Dugway_5J108-111 1 1
Legionella_longbeachae_NSW150 1 1
Legionella_pneumophila_str._Corby 2 2
Pseudomonas_stutzeri_A1501 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   127 127
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   43 43
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   35 35
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   37 37
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   112 111
Cryptococcus_neoformans_var._grubii_H99_ 20 20
Cryptococcus_neoformans_B-3501A_ 20 20
Cryptococcus_neoformans_JEC21_ 16 16
Paracoccidioides_brasiliensis_Pb01_ 31 31
Paracoccidioides_brasiliensis_Pb03_ 34 34
Coccidioides_posadasii_str._Silveira_ 48 48
Coccidioides_immitis_RMSCC_3703_ 35 35
Coccidioides_immitis_RMSCC_2394_ 46 46
Coccidioides_immitis_H538.4_ 40 40
Ajellomyces_dermatitidis_ER-3_ 39 39
Histoplasma_capsulatum_H143 38 38
Histoplasma_capsulatum_H88 39 39
Histoplasma_capsulatum_G186AR 39 39
Aspergillus_fumigatus_A1163_ 46 46
Candida_albicans_WO-1_ 16 16
Saccharomyces_cerevisiae_UC5 8 8
Saccharomyces_cerevisiae_PW5 8 8
Saccharomyces_cerevisiae_FL100 5 5
Saccharomyces_cerevisiae_CLIB324 4 4
Saccharomyces_cerevisiae_CBS7960 7 7
Saccharomyces_cerevisiae_YJM269 8 8
Saccharomyces_cerevisiae_T7 9 9
Saccharomyces_cerevisiae_FostersB 9 9
Saccharomyces_cerevisiae_FostersO 7 7
Saccharomyces_cerevisiae_VL3 8 8
Saccharomyces_cerevisiae_Vin13 10 10
Saccharomyces_cerevisiae_LalvinQA23 8 8
Saccharomyces_cerevisiae_AWRI796 9 9
Saccharomyces_cerevisiae_Sigma1278b 10 10
Saccharomyces_cerevisiae_W303 10 10
Saccharomyces_cerevisiae_JAY291 10 10
Saccharomyces_cerevisiae_AWRI1631 3 3
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_M22 5 5
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 6 6
Saccharomyces_cerevisiae_Y10 2 2
Saccharomyces_cerevisiae_YJM789_ 11 11
Saccharomyces_cerevisiae_YJM789 11 11
Saccharomyces_cerevisiae_RM11-1a 11 11
Saccharomyces_cerevisiae_RM11-1a_ 11 11
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   10 10
Schizosaccharomyces_pombe_972h-_ 12 12
Batrachochytrium_dendrobatidis_JEL423_ 28 28
Batrachochytrium_dendrobatidis_JAM81_ 25 25
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   297 285
Hordeum_vulgare_22   (Domesticated barley)   641 639
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   822 801
Trypanosoma_brucei_Lister_427_v4.1 11 11
Neospora_caninum_Nc-Liverpool_6.2 7 7
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 3 3
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_campestris_pv._vesicatoria_str._85-10 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Coxiella_burnetii_CbuG_Q212 1 1
Coxiella_burnetii_RSA_331 1 1
Coxiella_burnetii_RSA_493 1 1
Legionella_pneumophila_str._Paris 4 4
Legionella_pneumophila_str._Lens 3 3
Legionella_pneumophila_subsp._pneumophila_LPE509 4 4
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 4 4
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 4 4
Legionella_pneumophila_subsp._pneumophila 4 4
Legionella_pneumophila_subsp._pneumophila 3 3
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 4 4
Legionella_pneumophila_2300/99_Alcoy 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   68 68
Pan_troglodytes_69_2.1.4   (Chimpanzee)   59 59
Gorilla_gorilla_69_3.1   (Western gorilla)   60 60
Pongo_abelii_69_2   (Sumatran orangutan)   60 60
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   57 57
Macaca_mulatta_69_1   (Rhesus monkey)   58 58
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   58 58
Otolemur_garnettii_69_3   (Small-eared galago)   64 64
Microcebus_murinus_69_1   (Gray mouse lemur)   39 39
Rattus_norvegicus_69_3.4   (Norway rat)   67 67
Mus_musculus_69_38   (House mouse)   78 78
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   48 48
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   51 51
Cavia_porcellus_69_3   (Domestic guinea pig)   58 58
Oryctolagus_cuniculus_69_2   (Rabbit)   54 54
Ochotona_princeps_69   (American pika)   45 45
Tupaia_belangeri_69   (Northern tree shrew)   29 29
Sus_scrofa_69_10.2   (Pig)   56 56
Bos_taurus_69_3.1   (Cattle)   67 67
Vicugna_pacos_69_1   (Alpaca)   30 30
Tursiops_truncatus_69_1   (Bottlenose dolphin)   51 51
Mustela_putorius_furo_69_1.0   (Domestic ferret)   60 60
Ailuropoda_melanoleuca_69_1   (Giant panda)   61 61
Canis_familiaris_69_3.1   (Dog)   61 61
Felis_catus_69   (Domestic cat)   39 39
Equus_caballus_69_2   (Horse)   54 54
Myotis_lucifugus_69_2.0   (Little brown bat)   117 117
Pteropus_vampyrus_69_1   (Large flying fox)   57 57
Sorex_araneus_69_1   (European shrew)   34 34
Erinaceus_europaeus_69   (Western European hedgehog)   44 44
Procavia_capensis_69_1   (Cape rock hyrax)   41 41
Loxodonta_africana_69_3   (African savanna elephant)   56 56
Echinops_telfairi_69   (Small Madagascar hedgehog)   35 35
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   38 38
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   26 26
Macropus_eugenii_69_1.0   (Tammar wallaby)   34 34
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   48 48
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   63 63
Ornithorhynchus_anatinus_69_5   (Platypus)   42 42
Petromyzon_marinus_69_7.0   (Sea lamprey)   28 28
Meleagris_gallopavo_69_2   (Turkey)   40 40
Gallus_gallus_69_2   (Chicken)   49 49
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   48 48
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   52 52
Anolis_carolinensis_69_2.0   (Green anole)   51 51
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   56 56
Latimeria_chalumnae_69_1   (Coelacanth)   62 62
Gadus_morhua_69_1   (Atlantic cod)   58 58
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   58 58
Takifugu_rubripes_69_4   (Torafugu)   52 52
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   59 59
Oryzias_latipes_69_1   (Japanese medaka)   55 55
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   72 72
Oreochromis_niloticus_69_1.0   (Nile tilapia)   68 68
Danio_rerio_69_9   (Zebrafish)   75 75
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   19 19
Ciona_intestinalis_69   (Vase tunicate)   30 30
Drosophila_melanogaster_69_5   (Fruit fly)   26 26
Caenorhabditis_elegans_69_215   (Roundworm)   102 102
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   11 11
Arabidopsis_thaliana_10   (Thale cress)   640 640

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   200 200
Homo_sapiens__(NCBI_version)   (Human)   102 102
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   77 77
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   38 38
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   29 28
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   27 27
Moniliophthora_perniciosa_FA553__(Genome_survey) 32 32
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   20 20
Lotus_japonicus__(Early_assembly) 463 461
Malus_x_domestica_(Duplicate)   (Apple)   650 633
Ricinus_communis__(Early_assembly)   (Castor bean)   194 194
Nicotiana_benthamiana_0.4.4_(Early_draft) 446 442
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   330 324
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   335 329
Phoenix_dactylifera__(Early_draft)   (Date palm)   54 54
NCBI_plasmid_sequences_(Plasmids) 7 7
TargetDB__(Targets) 273 273
NCBI_viral_sequences_(Viral) 426 426
Protein_Data_Bank_(all_PDB_sequenc) 45 45
Protozoadb_2010_08_(Protozoadb) 160 160
STRING_v9.0.5_(STRING) 8999 8929
NCBI_2017_08_genome 95305 95035
Uniprot_2018_03_genome 121867 120116
PDB_chains_(SCOP_1.75)_(PDB) 6 6
UniProt__viral_sequences_(Viral) 32 32
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 145 145

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