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Domain combinations for Fucose-specific lectin superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Fucose-specific lectin domain in that genome.

Complete genomes
Genome     Number   Proteins
Saccoglossus_kowalevskii_v3.0 3 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 1 1
Acropora_digitifera_v1.0 1 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 2
Hydra_vulgaris 2 1
Amphimedon_queenslandica 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Sphaerobolus_stellatus_v1.0 39 29
Piloderma_croceum_F_1598_v1.0 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Hydnomerulius_pinastri_v2.0 2 2
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pleurotus_ostreatus_   (Oyster mushroom)   2 1
Amanita_thiersii_Skay4041_v1.0 3 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 3 3
Hebeloma_cylindrosporum_h7_v2.0 19 18
Laccaria_bicolor_S238N-H82_ 2 2
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Heterobasidion_annosum_ 1 1
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 3 3
Tulasnella_calospora_AL13/4D_v1.0 2 2
Postia_placenta_ 1 1
Wolfiporia_cocos_MD-104_SS10__v1.0 4 4
Fomitopsis_pinicolav1.0 2 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2 2
Phanerochaete_chrysosporium_RP-78_2.1 14 12
Daldinia_eschscholzii_EC12_v1.0 8 8
Apiospora_montagnei_NRRL_25634_v1.0 15 13
Magnaporthe_poae_ATCC_64411_22 9 9
Magnaporthe_grisea_70-15_ 12 12
Podospora_anserina_ 13 9
Sporotrichum_thermophile_ATCC_42464_ 5 5
Thielavia_terrestris_NRRL_8126_ 7 5
Chaetomium_globosum_CBS_148.51_ 9 9
Neurospora_tetrasperma_ 2 2
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 2 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   5 5
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 2 2
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 4 4
Fusarium_graminearum_ 7 7
Nectria_haematococca_mpVI_ 8 7
Fusarium_oxysporum_f._sp._lycopersici_4286_ 6 5
Fusarium_verticillioides_7600_ 6 6
Trichoderma_asperellum_CBS_433.97_v1.0 8 8
Trichoderma_atroviride_ 8 8
Trichoderma_citrinoviride_v1.0 5 5
Trichoderma_reesei_1.2 5 5
Trichoderma_virens_Gv29-8_ 9 8
Trichoderma_longibrachiatum_ATCC_18648_v1.0 5 5
Trichoderma_harzianum_CBS_226.95_v1.0 9 9
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 5 5
Sclerotinia_sclerotiorum_ 6 6
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 2 2
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 2 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 3 2
Cochliobolus_carbonum_26-R-13_v1.0 3 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   3 2
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 3 3
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 4 3
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 3 2
Coccidioides_immitis_RS_ 3 2
Microsporum_canis_CBS_113480_ 5 3
Trichophyton_equinum_CBS_127.97_ 4 2
Trichophyton_verrucosum_HKI_0517_ 6 3
Arthroderma_benhamiae_CBS_112371_ 5 3
Trichophyton_tonsurans_CBS_112818_ 3 2
Trichophyton_rubrum_CBS_118892_ 5 3
Uncinocarpus_reesii_1704_ 4 3
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 1
Penicillium_chrysogenum_v1.0 2 1
Aspergillus_fumigatus_Af293 3 3
Aspergillus_brasiliensis_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_wentii_v1.0 8 7
Aspergillus_oryzae_RIB40_ 5 4
Aspergillus_flavus_NRRL3357_ 4 4
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Eucalyptus_grandis_v201   (Rose gum)   3 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3 2
Gossypium_raimondii_v221 8 5
Citrus_clementina_v165 4 2
Citrus_sinensis_v154   (Sweet orange)   2 1
Carica_papaya_   (Papaya)   2 1
Medicago_truncatula_   (Barrel medic)   3 2
Phaseolus_vulgaris_v186   (French bean)   4 2
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   2 1
Fragaria_vesca_   (Wild strawberry)   2 1
Malus_domestica_v196   (Apple)   2 1
Prunus_persica_v139   (Peach)   2 1
Linum_usitatissimum_v200   (Flax)   4 2
Manihot_esculenta_v147   (Cassava)   3 2
Populus_trichocarpa_v156   (Black cottonwood)   6 3
Vitis_vinifera_   (Wine grape)   2 1
Mimulus_guttatus_v140   (Spotted monkey flower)   2 1
Solanum_lycopersicum_v.2.3   (Tomato)   2 1
Solanum_tuberosum_   (Potato)   7 6
Actinidia_chinensis_Hongyang_ 4 2
Aquilegia_coerulea_v195 2 1
Triticum_urartu_22 3 2
Triticum_aestivum_22   (Bread wheat)   5 3
Aegilops_tauschii_22 2 1
Brachypodium_distachyon_   (Stiff brome)   2 1
Oryza_barthii_22   (African wild rice)   3 2
Oryza_meridionalis_22 4 2
Oryza_glumaepatula_22 2 1
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 2 1
Oryza_nivara_22 2 1
Oryza_brachyantha_22   (Malo sina)   3 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2 1
Panicum_virgatum_v202   (Switchgrass)   3 2
Setaria_italica_v164   (Foxtail millet)   2 1
Zea_mays_subsp._mays_   (Maize)   3 2
Zea_mays_v181   (Maize)   3 2
Sorghum_bicolor_   (Sorghum)   2 1
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   2 1
Amborella_trichopoda_22 2 1
Chlorella_variabilis_sp._NC64A_ 6 5
Ostreococcus_tauri_ 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 3 3
Cyanophora_paradoxa_ 1 1
Aureococcus_anophagefferens_ 1 1
Geitlerinema_sp._PCC_7407 1 1
Gloeobacter_violaceus_PCC_7421 3 2
Rivularia_sp._PCC_7116 1 1
Calothrix_sp._PCC_7507 1 1
Anabaena_sp._90 2 2
Conexibacter_woesei_DSM_14684 4 3
Modestobacter_marinus 1 1
Blastococcus_saxobsidens_DD2 1 1
Catenulispora_acidiphila_DSM_44928 7 6
Stackebrandtia_nassauensis_DSM_44728 9 6
Frankia_symbiont_of_Datisca_glomerata 3 2
Frankia_alni_ACN14a 2 2
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Streptosporangium_roseum_DSM_43021 2 2
Kitasatospora_setae_KM-6054 13 10
Streptomyces_coelicolor_A3(2) 4 4
Streptomyces_sp._PAMC26508 7 5
Streptomyces_flavogriseus_ATCC_33331 7 4
Streptomyces_sp._SirexAA-E 4 4
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 10 7
Streptomyces_violaceusniger_Tu_4113 7 6
Streptomyces_avermitilis_MA-4680 6 6
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Actinosynnema_mirum_DSM_43827 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Saccharopolyspora_erythraea_NRRL_2338 2 1
Kribbella_flavida_DSM_17836 2 1
Microlunatus_phosphovorus_NM-1 2 2
Salinispora_arenicola_CNS-205 3 3
Salinispora_tropica_CNB-440 2 2
Actinoplanes_sp._N902-109 1 1
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 3 2
Gordonia_sp._KTR9 1 1
Gordonia_bronchialis_DSM_43247 1 1
Arthrobacter_phenanthrenivorans_Sphe3 2 1
Arthrobacter_aurescens_TC1 2 2
Arthrobacter_sp._Rue61a 2 2
Dehalococcoides_sp._BAV1 1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1 1
Sphaerobacter_thermophilus_DSM_20745 1 1
Herpetosiphon_aurantiacus_DSM_785 3 3
Roseiflexus_sp._RS-1 2 1
Roseiflexus_castenholzii_DSM_13941 3 2
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_deserti_VCD115 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Symbiobacterium_thermophilum_IAM_14863 2 1
Clostridium_cellulolyticum_H10 2 2
Clostridium_thermocellum_ATCC_27405 1 1
Candidatus_Desulforudis_audaxviator_MP104C 1 1
Desulfosporosinus_acidiphilus_SJ4 1 1
Desulfosporosinus_orientis_DSM_765 1 1
Desulfitobacterium_hafniense_Y51 1 1
Desulfotomaculum_acetoxidans_DSM_771 3 2
Desulfotomaculum_kuznetsovii_DSM_6115 2 2
Acetobacterium_woodii_DSM_1030 1 1
Clostridium_saccharolyticum_WM1 1 1
Alkaliphilus_oremlandii_OhILAs 1 1
Alkaliphilus_metalliredigens_QYMF 2 2
Clostridium_sp._BNL1100 1 1
Clostridium_beijerinckii_NCIMB_8052 2 1
Clostridium_tetani_E88 2 1
Clostridium_cellulovorans_743B 1 1
Clostridium_botulinum_A_str._ATCC_3502 3 2
Clostridium_acetobutylicum_ATCC_824 2 1
Mahella_australiensis_50-1_BON 2 2
Thermoanaerobacter_sp._X514 1 1
Haliscomenobacter_hydrossis_DSM_1100 3 3
Niastella_koreensis_GR20-10 4 1
Cytophaga_hutchinsonii_ATCC_33406 4 3
Solitalea_canadensis_DSM_3403 2 1
Pedobacter_heparinus_DSM_2366 1 1
Aequorivita_sublithincola_DSM_14238 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Treponema_denticola_ATCC_35405 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_mallensis_MP5ACTX8 4 2
Terriglobus_saanensis_SP1PR4 3 2
Candidatus_Nitrospira_defluvii 1 1
Bdellovibrio_bacteriovorus_HD100 2 2
Desulfococcus_oleovorans_Hxd3 1 1
Geobacter_daltonii_FRC-32 1 1
Geobacter_uraniireducens_Rf4 2 2
Sorangium_cellulosum_'So_ce_56' 6 5
Stigmatella_aurantiaca_DW4/3-1 4 4
Corallococcus_coralloides_DSM_2259 9 8
Myxococcus_xanthus_DK_1622 5 3
Myxococcus_fulvus_HW-1 3 2
Dechlorosoma_suillum_PS 1 1
Chromobacterium_violaceum_ATCC_12472 1 1
Neisseria_gonorrhoeae_NCCP11945 2 2
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Burkholderia_phymatum_STM815 1 1
Burkholderia_pseudomallei_1106a 2 2
Burkholderia_mallei_SAVP1 1 1
Burkholderia_ambifaria_AMMD 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Bordetella_petrii_DSM_12804 1 1
Achromobacter_xylosoxidans_A8 2 1
Achromobacter_xylosoxidans 1 1
Ruegeria_sp._TM1040 1 1
Rhodobacter_capsulatus_SB_1003 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2 1
Bradyrhizobium_japonicum_USDA_110 2 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_woodyi_ATCC_51908 1 1
Marinobacter_aquaeolei_VT8 1 1
Hahella_chejuensis_KCTC_2396 1 1
Photorhabdus_asymbiotica 4 3
Photorhabdus_luminescens_subsp._laumondii_TTO1 6 5
Pseudomonas_entomophila_L48 1 1
Candidatus_Nitrosopumilus_sp._AR2 2 1
Methanosaeta_harundinacea_6Ac 2 1
Methanosaeta_concilii_GP6 3 1
Methanococcoides_burtonii_DSM_6242 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 3 2
Aciduliprofundum_sp._MAR08-339 1 1

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Strains
Genome     Number   Proteins
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 3 2
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 3 2
Coccidioides_immitis_H538.4_ 3 2
Aspergillus_fumigatus_A1163_ 3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 1
Hordeum_vulgare_22   (Domesticated barley)   10 8
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3 2
Oscillatoria_nigro-viridis_PCC_7112 2 1
Cyanobacterium_aponinum_PCC_10605 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 3 2
Anabaena_cylindrica_PCC_7122 2 1
Frankia_sp._EuI1c 1 1
Frankia_sp._CcI3 1 1
Streptomyces_rapamycinicus_NRRL_5491 6 5
Streptomyces_davawensis_JCM_4913 3 2
Streptomyces_fulvissimus_DSM_40593 10 6
Streptomyces_venezuelae_ATCC_10712 11 8
Streptomyces_collinus_Tu_365 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Saccharothrix_espanaensis_DSM_44229 10 7
Amycolatopsis_orientalis_HCCB10007 1 1
Actinoplanes_friuliensis_DSM_7358 3 2
Dehalococcoides_mccartyi_DCMB5 1 1
Dehalococcoides_sp._VS 1 1
Clostridium_thermocellum_DSM_1313 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Clostridium_saccharobutylicum_DSM_13864 1 1
Clostridium_tetani_genome_12124569 2 1
Clostridium_pasteurianum_BC1 1 1
Clostridium_botulinum_H04402_065 3 2
Clostridium_botulinum_F_str._230613 3 2
Clostridium_botulinum_F_str._Langeland 3 2
Clostridium_botulinum_B1_str._Okra 3 2
Clostridium_botulinum_Ba4_str._657 3 2
Clostridium_botulinum_A2_str._Kyoto 3 2
Clostridium_botulinum_A3_str._Loch_Maree 3 2
Clostridium_botulinum_A_str._Hall 3 2
Clostridium_botulinum_A_str._ATCC_19397 3 2
Clostridium_acetobutylicum_DSM_1731 2 1
Clostridium_acetobutylicum_EA_2018 2 1
Thermoanaerobacter_sp._X513 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_biovar_anthracis_str._CI 1 1
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 2 2
Geobacter_sp._M18 2 1
Sorangium_cellulosum_So0157-2 6 5
Myxococcus_stipitatus_DSM_14675 8 7
Neisseria_gonorrhoeae_TCDC-NG08107 4 2
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_pseudomallei_MSHR305 2 2
Burkholderia_pseudomallei_NCTC_13179 2 2
Burkholderia_pseudomallei_BPC006 2 2
Burkholderia_pseudomallei_1026b 2 2
Burkholderia_pseudomallei_MSHR346 2 2
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 2 2
Burkholderia_pseudomallei_K96243 2 2
Burkholderia_mallei_NCTC_10229 1 1
Burkholderia_mallei_NCTC_10247 1 1
Burkholderia_lata 1 1
Burkholderia_ambifaria_MC40-6 2 2
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Magnetospirillum_gryphiswaldense_MSR-1_v2 1 1
Bradyrhizobium_japonicum_USDA_6 1 1
Xylella_fastidiosa_9a5c 1 1
Edwardsiella_tarda_C07-087 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Archaeoglobus_sulfaticallidus_PM70-1 2 1
Methanobacterium_sp._SWAN-1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 1

Others
Genome     Number   Proteins
Lotus_japonicus__(Early_assembly) 2 1
Malus_x_domestica_(Duplicate)   (Apple)   2 1
Ricinus_communis__(Early_assembly)   (Castor bean)   2 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 1
NCBI_plasmid_sequences_(Plasmids) 11 11
PDB_chains_(SCOP_1.75)_(PDB) 2 2
NCBI_viral_sequences_(Viral) 1 1
TargetDB__(Targets) 6 6
Protein_Data_Bank_(all_PDB_sequenc) 116 105
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 143 134
STRING_v9.0.5_(STRING) 269 233
Uniprot_2018_03_genome 7510 6055
NCBI_2017_08_genome 10334 8514

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