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Mammalian Phenotype (MP): embryonic lethality 

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Root: MP Hierarchy (mammalian/mouse phenotype from MGI_4.41)

Shortest distance to current term
(+ for parents, - for children)
MP term [MP ID] <#Children> #Domains
(Superfamily|Family)
#Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   mammalian phenotype [MP:0000001] <29>
+ + + 3:   mortality/aging [MP:0010768] <4>(82|115) (89|67|51)
+ + 2:   abnormal survival [MP:0010769] <10>(59|91) (67|55|40)
+ + 2:   preweaning lethality [MP:0010770] <4>(47|78) (55|45|38)
+ 1:   prenatal lethality [MP:0002080] <5>(26|48) (30|23|16)
0:   embryonic lethality [MP:0008762] <4>(15|29) (16|11|7)
- 1:   embryonic lethality during organogenesis [MP:0006207] <2>(4|7) (4|2|2)
- 1:   embryonic lethality prior to tooth bud stage [MP:0013293] <1>(9|14) (10|5|1)
- 1:   embryonic lethality, complete penetrance [MP:0011092](0|2) (0|2|2)
- 1:   embryonic lethality, incomplete penetrance [MP:0011102](1|0) (1|0|0)

Superfamily

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Superfamily

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SCOP term FDR (all) Annotation (direct or inherited)
Ribonuclease PH domain 2-like0Direct
GroEL-intermediate domain like0Direct
ARM repeat0.00007466Direct
SMAD MH1 domain0.001222Inherited
DNA clamp0.00364Inherited
GroEL apical domain-like0.00364Inherited
HCP-like0.003984Inherited
ADC-like0.01254Inherited
dsRNA-binding domain-like0.01618Inherited
Subtilisin-like0.03267Inherited
BRCT domain0.245Inherited
Cullin homology domain0.4154Inherited
Zinc beta-ribbon0.4979Inherited
Nucleic acid-binding proteins0.7236Inherited
p53-like transcription factors0.7236Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

Family

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Family

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SCOP term FDR (all) Annotation (direct or inherited)
Chromo barrel domain0Direct
Retinoblastoma tumor suppressor domains0Direct
Ribonuclease PH domain 1-like0Direct
Ribonuclease PH domain 2-like0Direct
Fumble-like0Direct
DNA ligase0Direct
Group II chaperonin (CCT, TRIC), apical domain0Direct
RecA protein-like (ATPase-domain)0.0000538Direct
Phoshoinositide 3-kinase (PI3K), catalytic domain0.0001628Direct
SMAD MH1 domain0.0007177Direct
SMAD domain0.0007177Direct
SCF ubiquitin ligase complex WHB domain0.002261Inherited
Armadillo repeat0.006312Inherited
DNA polymerase I0.008229Inherited
Proprotein convertase P-domain0.008229Inherited
Prohormone convertase 1 pro-domain0.008229Inherited
C5 cytosine-specific DNA methylase, DCM0.008433Inherited
Subtilases0.01328Inherited
Tandem AAA-ATPase domain0.02542Inherited
T-box0.1256Inherited
Extracellular domain of cell surface receptors0.235Inherited
Erythroid transcription factor GATA-10.2898Inherited
Histone lysine methyltransferases0.3489Inherited
Cullin homology domain0.3575Inherited
Ubiquitin carboxyl-terminal hydrolase, UCH0.396Inherited
Linker histone H1/H50.4396Inherited
N-acetyl transferase, NAT0.6919Inherited
Cell cycle transcription factor e2f-dp0.7567Inherited
Extended AAA-ATPase domain0.8047Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

Supra-domain (Single|Duplex|Triple)

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Supra-domain (Single)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Ribonuclease PH domain 2-like0Direct
GroEL-intermediate domain like0Direct
ARM repeat0.00003574Direct
SMAD MH1 domain0.0006743Direct
GroEL apical domain-like0.002134Inherited
DNA clamp0.002134Inherited
HCP-like0.002347Inherited
ADC-like0.007965Inherited
dsRNA-binding domain-like0.01047Inherited
Subtilisin-like0.02237Inherited
BRCT domain0.2053Inherited
Cullin homology domain0.3685Inherited
Zinc beta-ribbon0.4502Inherited
Nucleic acid-binding proteins0.684Inherited
p53-like transcription factors0.684Inherited
Acyl-CoA N-acyltransferases (Nat)0.7508Inherited

LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

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Supra-domain (Duplex) in N- to C-terminal order

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57196,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    54211,55666
  • 54211 - Ribosomal protein S5 domain 2-like
  • 55666 - Ribonuclease PH domain 2-like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    75632,46785
  • 75632 - Cullin homology domain
  • 46785 - "Winged helix" DNA-binding domain
  • 0.002134Inherited
    52113,52113
  • 52113 - BRCT domain
  • 52113 - BRCT domain
  • 0.002347Inherited
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.007796Inherited
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.01793Inherited
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.01793Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.02057Inherited
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.02428Inherited
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.3685Inherited

    LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

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    Supra-domain (Triple) in N- to C-terminal order

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    57196,57424,57424
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 57424 - LDL receptor-like module
  • 0Direct
    63825,57196,57424
  • 63825 - YWTD domain
  • 57196 - EGF/Laminin
  • 57424 - LDL receptor-like module
  • 0Direct
    54897,52743,49785
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.007796Inherited
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.01793Inherited
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.3685Inherited
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.3685Inherited

    LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

    Distribution on sTOL

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