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Zebrafish Anatomy (ZA): nervous system 

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Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

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ZA term [ZA ID] <#Children> #Domains
(Superfamily|Family)
#Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + 3:   anatomical structure [ZFA:0000037] <16>(269|288) (269|153|73)
+ + 2:   anatomical group [ZFA:0001512] <5>(173|202) (177|125|60)
+ + 2:   whole organism [ZFA:0001094] <8>(266|287) (266|151|71)
+ 1:   anatomical system [ZFA:0001439] <18>(160|190) (165|119|58)
0:   nervous system [ZFA:0000396] <9>(55|55) (58|31|16)
- 1:   neuron [ZFA:0009248] <26>(6|7) (6|4|1)
- 1:   central nervous system [ZFA:0000012] <10>(26|25) (28|14|9)
- 1:   nerve [ZFA:0007009] <7>(2|1) (2|1|1)
- 1:   peripheral nervous system [ZFA:0000142] <7>(4|3) (4|2|1)
- 1:   sensory system [ZFA:0000282] <5>(22|23) (23|12|6)
- 1:   autonomic nervous system [ZFA:0001574] <4>(0|0) (0|0|0)
- 1:   ependymal cell [ZFA:0009033] <1>(0|0) (0|0|0)
- 1:   glial cell [ZFA:0009073] <1>(0|0) (0|0|0)
- 1:   primitive meninx [ZFA:0001355] <1>(0|0) (0|0|0)

Superfamily

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Superfamily

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SCOP term FDR (all) Annotation (direct or inherited)
Soluble quinoprotein glucose dehydrogenase0Direct
Translational machinery components0Direct
Formate/glycerate dehydrogenase catalytic domain-like0Direct
Cap-Gly domain0Direct
HSP20-like chaperones0Direct
JAB1/MPN domain0Direct
BRK domain-like0Direct
Metallo-dependent hydrolases0Direct
Class II aaRS ABD-related0Direct
BPTI-like0Direct
ADC-like0Direct
Riboflavin synthase domain-like0Direct
Tubulin nucleotide-binding domain-like0Direct
HIT-like0Direct
Single hybrid motif0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0Direct
Tubulin C-terminal domain-like0Direct
Cdc48 domain 2-like0Direct
CCCH zinc finger0Direct
PP2C-like0Direct
Glutathione synthetase ATP-binding domain-like0Direct
SMAD MH1 domain0Direct
Composite domain of metallo-dependent hydrolases0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Doublecortin (DC)0Direct
Nucleotide cyclase0Direct
Class II aaRS and biotin synthetases0Direct
WD40 repeat-like0.003354Inherited
HMG-box0.05818Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.06687Inherited
Homeodomain-like0.173Inherited
SMAD/FHA domain0.1805Inherited
Serine protease inhibitors0.2373Inherited
Protease propeptides/inhibitors0.2623Inherited
Arginase/deacetylase0.3162Inherited
Cyclin-like0.334Inherited
Sema domain0.334Inherited
BAR/IMD domain-like0.3762Inherited
Subtilisin-like0.378Inherited
Cadherin-like0.3931Inherited
NAD(P)-binding Rossmann-fold domains0.4588Inherited
lambda repressor-like DNA-binding domains0.4873Inherited
Plexin repeat0.4881Inherited
PDZ domain-like0.5124Inherited
Multidrug efflux transporter AcrB transmembrane domain0.5315Inherited
GTPase activation domain, GAP0.6139Inherited
Cytochrome P4500.6503Inherited
Fibronectin type III0.6778Inherited
beta-beta-alpha zinc fingers0.7168Inherited
Growth factor receptor domain0.7573Inherited
HLH, helix-loop-helix DNA-binding domain0.8301Inherited
EGF/Laminin0.9135Inherited
Glucocorticoid receptor-like (DNA-binding domain)1Inherited
Immunoglobulin1Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

Family

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Family

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SCOP term FDR (all) Annotation (direct or inherited)
CCCH zinc finger0Direct
Platelet-derived growth factor-like0Direct
BRK domain-like0Direct
SMAD domain0Direct
Connexin430Direct
Cdc48 domain 2-like0Direct
SMAD MH1 domain0Direct
FYVE, a phosphatidylinositol-3-phosphate binding domain0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Doublecortin (DC)0Direct
Biotinyl/lipoyl-carrier proteins and domains0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0Direct
Ovomucoid domain III-like0Direct
Formate/glycerate dehydrogenases, NAD-domain0Direct
Small Kunitz-type inhibitors & BPTI-like toxins0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Zf-UBP0Direct
PWWP domain0Direct
Cdc48 N-terminal domain-like0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Chromo domain0Direct
Tubulin, GTPase domain0Direct
Cap-Gly domain0Direct
PP2C-like0Direct
Anticodon-binding domain of Class II aaRS0Direct
Tubulin, C-terminal domain0Direct
Tetramerization domain of potassium channels0Direct
Adenylyl and guanylyl cyclase catalytic domain0Direct
C5 cytosine-specific DNA methylase, DCM0Direct
WD40-repeat0.009583Inherited
HMG-box0.04005Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.04877Inherited
Tandem AAA-ATPase domain0.05593Inherited
Tetratricopeptide repeat (TPR)0.09523Inherited
Multidrug efflux transporter AcrB transmembrane domain0.1317Inherited
Homeodomain0.1447Inherited
Aquaporin-like0.276Inherited
Histone deacetylase, HDAC0.276Inherited
Sema domain0.2832Inherited
Growth factor receptor domain0.3226Inherited
POU-specific domain0.3298Inherited
Cadherin0.4051Inherited
Plexin repeat0.4337Inherited
PDZ domain0.4846Inherited
Motor proteins0.5533Inherited
Fibronectin type III0.6057Inherited
Cytochrome P4500.6068Inherited
Paired domain0.6823Inherited
I set domains0.7458Inherited
HLH, helix-loop-helix DNA-binding domain0.7754Inherited
EGF-type module0.8091Inherited
Classic zinc finger, C2H20.9212Inherited
Transforming growth factor (TGF)-beta0.9698Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

Supra-domain (Single|Duplex|Triple)

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Supra-domain (Single)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Composite domain of metallo-dependent hydrolases0Direct
PP2C-like0Direct
Cap-Gly domain0Direct
Single hybrid motif0Direct
Formate/glycerate dehydrogenase catalytic domain-like0Direct
CCCH zinc finger0Direct
Nucleotide cyclase0Direct
ADC-like0Direct
Metallo-dependent hydrolases0Direct
Cdc48 domain 2-like0Direct
HIT-like0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Ferredoxin reductase-like, C-terminal NADP-linked domain0Direct
HSP20-like chaperones0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Class II aaRS ABD-related0Direct
Glutathione synthetase ATP-binding domain-like0Direct
Riboflavin synthase domain-like0Direct
Tubulin C-terminal domain-like0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
JAB1/MPN domain0Direct
Class II aaRS and biotin synthetases0Direct
BRK domain-like0Direct
Translational machinery components0Direct
BPTI-like0Direct
Doublecortin (DC)0Direct
Tubulin nucleotide-binding domain-like0Direct
SMAD MH1 domain0Direct
WD40 repeat-like0.00215Inherited
HMG-box0.04384Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.05112Inherited
Homeodomain-like0.146Inherited
SMAD/FHA domain0.1528Inherited
Serine protease inhibitors0.2066Inherited
Protease propeptides/inhibitors0.2312Inherited
Arginase/deacetylase0.2838Inherited
Aquaporin-like0.2838Inherited
Sema domain0.3009Inherited
Cyclin-like0.3009Inherited
BAR/IMD domain-like0.3418Inherited
Subtilisin-like0.3436Inherited
Cadherin-like0.359Inherited
NAD(P)-binding Rossmann-fold domains0.4248Inherited
lambda repressor-like DNA-binding domains0.4549Inherited
Plexin repeat0.4558Inherited
PDZ domain-like0.481Inherited
Multidrug efflux transporter AcrB transmembrane domain0.5006Inherited
GTPase activation domain, GAP0.5867Inherited
Cytochrome P4500.625Inherited
Ankyrin repeat0.6401Inherited
Fibronectin type III0.6534Inherited
beta-beta-alpha zinc fingers0.6943Inherited
Growth factor receptor domain0.7387Inherited
HLH, helix-loop-helix DNA-binding domain0.8166Inherited
Cystine-knot cytokines0.858Inherited
EGF/Laminin0.9062Inherited
Immunoglobulin1Inherited
Glucocorticoid receptor-like (DNA-binding domain)1Inherited

LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

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Supra-domain (Duplex) in N- to C-terminal order

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50978,50998
  • 50978 - WD40 repeat-like
  • 50998 - Quinoprotein alcohol dehydrogenase-like
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    57362,57362
  • 57362 - BPTI-like
  • 57362 - BPTI-like
  • 0Direct
    52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    63380,52343
  • 63380 - Riboflavin synthase domain-like
  • 52343 - Ferredoxin reductase-like, C-terminal NADP-linked domain
  • 0Direct
    82199,57667
  • 82199 - SET domain
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48097,56112
  • 48097 - Regulator of G-protein signaling, RGS
  • 56112 - Protein kinase-like (PK-like)
  • 0Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0Direct
    103575,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 0Direct
    57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    54001,143791
  • 54001 - Cysteine proteinases
  • 143791 - DUSP-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0Direct
    54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.1462Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.2838Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.3009Inherited
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.3436Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4971Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.5155Inherited
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.6862Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.763Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.7758Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.8711Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9357Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.989Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.9983Inherited

    LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

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    Supra-domain (Triple) in N- to C-terminal order

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    82199,57667,57667
  • 82199 - SET domain
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    103575,81296,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 81296 - E set domains
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.2183Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.2421Inherited
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.3436Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.5455Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.5741Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.7249Inherited

    LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

    Distribution on sTOL

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