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Zebrafish Anatomy (ZA): nervous system 

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Root: ZA Hierarchy (zebrafish anatomy from ZFIN zebrafish anatomy ontology)

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ZA term [ZA ID] <#Children> #Domains
(Superfamily|Family)
#Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   zebrafish anatomical entity [ZFA:0100000] <6>
+ + + 3:   anatomical structure [ZFA:0000037] <16>(261|276) (261|148|71)
+ + 2:   whole organism [ZFA:0001094] <8>(258|275) (258|146|69)
+ + 2:   anatomical group [ZFA:0001512] <5>(164|190) (167|120|58)
+ 1:   anatomical system [ZFA:0001439] <18>(152|179) (157|115|56)
0:   nervous system [ZFA:0000396] <9>(50|49) (55|30|15)
- 1:   neuron [ZFA:0009248] <26>(6|7) (7|4|1)
- 1:   central nervous system [ZFA:0000012] <10>(22|23) (24|15|8)
- 1:   nerve [ZFA:0007009] <7>(2|1) (3|1|1)
- 1:   peripheral nervous system [ZFA:0000142] <7>(3|2) (4|2|1)
- 1:   sensory system [ZFA:0000282] <5>(19|18) (19|11|6)
- 1:   autonomic nervous system [ZFA:0001574] <4>(0|0) (0|0|0)
- 1:   ependymal cell [ZFA:0009033] <1>(0|0) (0|0|0)
- 1:   glial cell [ZFA:0009073] <1>(0|0) (0|0|0)
- 1:   primitive meninx [ZFA:0001355] <1>(0|0) (0|0|0)

Superfamily

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Superfamily

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SCOP term FDR (all) Annotation (direct or inherited)
SMAD MH1 domain0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
Nucleotide cyclase0Direct
Composite domain of metallo-dependent hydrolases0Direct
JAB1/MPN domain0Direct
Translational machinery components0Direct
BRK domain-like0Direct
Cdc48 domain 2-like0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
CoA-dependent acyltransferases0Direct
Doublecortin (DC)0Direct
Class II aaRS ABD-related0Direct
ADC-like0Direct
Tubulin nucleotide-binding domain-like0Direct
HSP20-like chaperones0Direct
Glutathione synthetase ATP-binding domain-like0Direct
BPTI-like0Direct
CCCH zinc finger0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Class II aaRS and biotin synthetases0Direct
Metallo-dependent hydrolases0Direct
PP2C-like0Direct
Cap-Gly domain0Direct
Tubulin C-terminal domain-like0Direct
Single hybrid motif0Direct
WD40 repeat-like0.009119Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.06222Inherited
HMG-box0.06638Inherited
Homeodomain-like0.1134Inherited
P-loop containing nucleoside triphosphate hydrolases0.1345Inherited
SMAD/FHA domain0.2089Inherited
Serine protease inhibitors0.2273Inherited
Protease propeptides/inhibitors0.2501Inherited
Sema domain0.318Inherited
Cyclin-like0.318Inherited
lambda repressor-like DNA-binding domains0.3224Inherited
Subtilisin-like0.3647Inherited
Cadherin-like0.3672Inherited
GTPase activation domain, GAP0.4707Inherited
Plexin repeat0.4712Inherited
Multidrug efflux transporter AcrB transmembrane domain0.5141Inherited
PDZ domain-like0.6044Inherited
Fibronectin type III0.6159Inherited
beta-beta-alpha zinc fingers0.7792Inherited
NAD(P)-binding Rossmann-fold domains0.8219Inherited
HLH, helix-loop-helix DNA-binding domain0.8314Inherited
Growth factor receptor domain0.8993Inherited
EGF/Laminin0.9931Inherited
Immunoglobulin1Inherited
Glucocorticoid receptor-like (DNA-binding domain)1Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

Family

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Family

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SCOP term FDR (all) Annotation (direct or inherited)
Cdc48 N-terminal domain-like0Direct
C5 cytosine-specific DNA methylase, DCM0Direct
Hydantoinase (dihydropyrimidinase)0Direct
Anticodon-binding domain of Class II aaRS0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Biotinyl/lipoyl-carrier proteins and domains0Direct
SMAD domain0Direct
Connexin430Direct
Ovomucoid domain III-like0Direct
Hydantoinase (dihydropyrimidinase), catalytic domain0Direct
PWWP domain0Direct
Tubulin, C-terminal domain0Direct
Tetramerization domain of potassium channels0Direct
Chromo domain0Direct
BRK domain-like0Direct
PP2C-like0Direct
Small Kunitz-type inhibitors & BPTI-like toxins0Direct
Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A0Direct
Platelet-derived growth factor-like0Direct
Doublecortin (DC)0Direct
CCCH zinc finger0Direct
Adenylyl and guanylyl cyclase catalytic domain0Direct
Tubulin, GTPase domain0Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0Direct
Cdc48 domain 2-like0Direct
SMAD MH1 domain0Direct
Cap-Gly domain0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
Tetratricopeptide repeat (TPR)0.02243Inherited
WD40-repeat0.02667Inherited
Tandem AAA-ATPase domain0.03448Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.04457Inherited
HMG-box0.04697Inherited
Homeodomain0.09221Inherited
Multidrug efflux transporter AcrB transmembrane domain0.1238Inherited
POU-specific domain0.1315Inherited
Sema domain0.2677Inherited
Growth factor receptor domain0.2975Inherited
Cadherin0.3797Inherited
Plexin repeat0.413Inherited
Fibronectin type III0.5377Inherited
PDZ domain0.588Inherited
Motor proteins0.6262Inherited
Paired domain0.6671Inherited
HLH, helix-loop-helix DNA-binding domain0.7799Inherited
I set domains0.8663Inherited
Classic zinc finger, C2H20.9394Inherited
Transforming growth factor (TGF)-beta0.9615Inherited
EGF-type module0.9751Inherited

LINKTO: Domain2BO Download and Domain2BO Algorithm

Supra-domain (Single|Duplex|Triple)

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Supra-domain (Single)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
BRK domain-like0Direct
Tubulin nucleotide-binding domain-like0Direct
Composite domain of metallo-dependent hydrolases0Direct
Class II aaRS and biotin synthetases0Direct
Soluble quinoprotein glucose dehydrogenase0Direct
Translational machinery components0Direct
Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit0Direct
Glutathione synthetase ATP-binding domain-like0Direct
Class II aaRS ABD-related0Direct
HSP20-like chaperones0Direct
BPTI-like0Direct
PP2C-like0Direct
ADC-like0Direct
Nucleotide cyclase0Direct
Doublecortin (DC)0Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0Direct
JAB1/MPN domain0Direct
SMAD MH1 domain0Direct
Cdc48 domain 2-like0Direct
Single hybrid motif0Direct
Metallo-dependent hydrolases0Direct
CCCH zinc finger0Direct
Cap-Gly domain0Direct
Tubulin C-terminal domain-like0Direct
CoA-dependent acyltransferases0Direct
WD40 repeat-like0.006011Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.04654Inherited
alpha/beta-Hydrolases0.04654Inherited
HMG-box0.04991Inherited
Homeodomain-like0.09023Inherited
P-loop containing nucleoside triphosphate hydrolases0.1091Inherited
SMAD/FHA domain0.1778Inherited
Serine protease inhibitors0.1947Inherited
Protease propeptides/inhibitors0.2167Inherited
Cyclin-like0.2818Inherited
Sema domain0.2818Inherited
Cytokine0.2862Inherited
lambda repressor-like DNA-binding domains0.2862Inherited
Subtilisin-like0.3271Inherited
Cadherin-like0.3297Inherited
p53-like transcription factors0.3904Inherited
GTPase activation domain, GAP0.4342Inherited
Plexin repeat0.4346Inherited
Multidrug efflux transporter AcrB transmembrane domain0.4799Inherited
Ankyrin repeat0.5707Inherited
PDZ domain-like0.574Inherited
Fibronectin type III0.586Inherited
beta-beta-alpha zinc fingers0.7598Inherited
NAD(P)-binding Rossmann-fold domains0.8063Inherited
HLH, helix-loop-helix DNA-binding domain0.8167Inherited
Cystine-knot cytokines0.8351Inherited
Growth factor receptor domain0.8896Inherited
EGF/Laminin0.9947Inherited
Glucocorticoid receptor-like (DNA-binding domain)1Inherited
Immunoglobulin1Inherited

LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

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Supra-domain (Duplex) in N- to C-terminal order

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54585,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57903,47370
  • 57903 - FYVE/PHD zinc finger
  • 47370 - Bromodomain
  • 0Direct
    50692,54585
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 0Direct
    103575,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 0Direct
    82199,57667
  • 82199 - SET domain
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    57362,57362
  • 57362 - BPTI-like
  • 57362 - BPTI-like
  • 0Direct
    54001,143791
  • 54001 - Cysteine proteinases
  • 143791 - DUSP-like
  • 0Direct
    51556,51338
  • 51556 - Metallo-dependent hydrolases
  • 51338 - Composite domain of metallo-dependent hydrolases
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0Direct
    50978,50998
  • 50978 - WD40 repeat-like
  • 50998 - Quinoprotein alcohol dehydrogenase-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0Direct
    89837,89837
  • 89837 - Doublecortin (DC)
  • 89837 - Doublecortin (DC)
  • 0Direct
    54160,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    52374,47323
  • 52374 - Nucleotidylyl transferase
  • 47323 - Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
  • 0Direct
    54160,54160
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 0Direct
    54897,52743
  • 54897 - Protease propeptides/inhibitors
  • 52743 - Subtilisin-like
  • 0.1384Inherited
    49562,48350
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 48350 - GTPase activation domain, GAP
  • 0.2723Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.2818Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.3271Inherited
    81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.3271Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4681Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.4868Inherited
    50156,50156
  • 50156 - PDZ domain-like
  • 50156 - PDZ domain-like
  • 0.6675Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.7461Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.8292Inherited
    90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.8632Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.9912Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.9965Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.9975Inherited

    LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

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    Supra-domain (Triple) in N- to C-terminal order

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,57184,57196
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 57196 - EGF/Laminin
  • 0Direct
    54160,52540,52540
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    103575,81296,81296
  • 103575 - Plexin repeat
  • 81296 - E set domains
  • 81296 - E set domains
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    54585,52540,52540
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    54160,54160,52540
  • 54160 - Chromo domain-like
  • 54160 - Chromo domain-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    82199,57667,57667
  • 82199 - SET domain
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    50692,54585,52540
  • 50692 - ADC-like
  • 54585 - Cdc48 domain 2-like
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.1986Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.2256Inherited
    81296,81296,81296
  • 81296 - E set domains
  • 81296 - E set domains
  • 81296 - E set domains
  • 0.3271Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.5313Inherited
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.5464Inherited
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.632Inherited

    LINKTO: Supra-domain2BO Download and Supra-domain2BO Algorithm

    Distribution on sTOL

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