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Domain combination pairs in Bradyrhizobium sp. ORS 278

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

756 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6031
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 542
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 5216
Thioredoxin-like GST C-terminal domain-like 333
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 3118
Homodimeric domain of signal transducing histidine kinase CheY-like 3017
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PYP-like sensor domain (PAS domain) 2920
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 293
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 2823
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 273
Homodimeric domain of signal transducing histidine kinase PYP-like sensor domain (PAS domain) 2617
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 267
GroES-like NAD(P)-binding Rossmann-fold domains 253
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 244
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 241
P-loop containing nucleoside triphosphate hydrolases MOP-like 221
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 216
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 206
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 206
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 195
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 195
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 195
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 195
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 184
CheY-like PYP-like sensor domain (PAS domain) 1811
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 175
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 171
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 172
CheY-like C-terminal effector domain of the bipartite response regulators 163
Cytochrome c Cytochrome c 165
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 162
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 162
Actin-like ATPase domain Actin-like ATPase domain 157
Thiolase-like Thiolase-like 152
Nucleotide cyclase EAL domain-like 156
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 144
cAMP-binding domain-like "Winged helix" DNA-binding domain 141
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 143
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 134
Homeodomain-like Homeodomain-like 134
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 132
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 115
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 111
PYP-like sensor domain (PAS domain) Nucleotide cyclase 106
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 103
TPR-like TPR-like 104
PYP-like sensor domain (PAS domain) EAL domain-like 95
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 96
"Winged helix" DNA-binding domain GAF domain-like 92
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
(Trans)glycosidases Glycosyl hydrolase domain 85
CheY-like P-loop containing nucleoside triphosphate hydrolases 82
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 81
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 83
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 85
CheY-like Homeodomain-like 82
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 85
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 84
Trypsin-like serine proteases PDZ domain-like 74
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 73
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 71
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 71
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 61
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 61
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 63
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
GAF domain-like PYP-like sensor domain (PAS domain) 66
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 63
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
PreATP-grasp domain Rudiment single hybrid motif 62
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
UDP-Glycosyltransferase/glycogen phosphorylase TPR-like 52
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 52
ClpP/crotonase ClpP/crotonase 51
CheY-like CheY-like 55
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 53
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 54
Translation proteins EF-G C-terminal domain-like 53
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 53
"Winged helix" DNA-binding domain PLP-dependent transferases 52
HlyD-like secretion proteins HlyD-like secretion proteins 54
Calcium ATPase, transduction domain A HAD-like 55
GAF domain-like Homodimeric domain of signal transducing histidine kinase 55
E set domains (Trans)glycosidases 53
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
HAD-like Calcium ATPase, transmembrane domain M 55
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 53
Triger factor/SurA peptide-binding domain-like FKBP-like 53
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 55
GAF domain-like CheY-like 55
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 51
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 52
Homodimeric domain of signal transducing histidine kinase CheW-like 42
GroEL equatorial domain-like GroEL apical domain-like 41
GAF domain-like Nucleotide cyclase 43
E set domains Glycosyl hydrolase domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Histidine-containing phosphotransfer domain, HPT domain CheW-like 42
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 42
Lysozyme-like PGBD-like 41
GroEL equatorial domain-like GroEL-intermediate domain like 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Class I glutamine amidotransferase-like Homeodomain-like 42
HAMP domain-like PYP-like sensor domain (PAS domain) 44
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 43
GroEL-intermediate domain like GroEL apical domain-like 41
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
P-loop containing nucleoside triphosphate hydrolases TPR-like 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
Cupredoxins Cupredoxins 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 42
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
lambda repressor-like DNA-binding domains RmlC-like cupins 41
ACT-like ACT-like 43
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 42
Lysozyme-like beta-lactamase/transpeptidase-like 43
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 44
Histidine-containing phosphotransfer domain, HPT domain CheY-like 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
GAF domain-like GAF domain-like 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 32
PDZ domain-like PDZ domain-like 33
NAD(P)-binding Rossmann-fold domains ACT-like 33
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 33
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Nucleic acid-binding proteins RuvA domain 2-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
Translation proteins Ribosomal protein S5 domain 2-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
GroES-like GroES-like 31
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 33
Caspase-like TPR-like 32
C-terminal effector domain of the bipartite response regulators TPR-like 32
PreATP-grasp domain Single hybrid motif 31
FAD/NAD(P)-binding domain Thioredoxin-like 32
Glutathione synthetase ATP-binding domain-like Single hybrid motif 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 32
Alpha-L RNA-binding motif Pseudouridine synthase 32
CheY-like Methylesterase CheB, C-terminal domain 31
"Winged helix" DNA-binding domain Chorismate lyase-like 32
Rudiment single hybrid motif Single hybrid motif 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Nucleotide cyclase TPR-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 33
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 31
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
PYP-like sensor domain (PAS domain) Homeodomain-like 21
Homeodomain-like Ribonuclease H-like 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
P-loop containing nucleoside triphosphate hydrolases CarD-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
Methyl-accepting chemotaxis protein (MCP) signaling domain PilZ domain-like 21
RmlC-like cupins Homeodomain-like 21
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
Regulatory protein AraC Homeodomain-like 22
PGBD-like L,D-transpeptidase catalytic domain-like 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
ISP domain Bet v1-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
GAF domain-like Homeodomain-like 22
Single hybrid motif CoA-dependent acyltransferases 22
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
Pectin lyase-like Pectin lyase-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
CheY-like HD-domain/PDEase-like 21
Translation proteins ThrRS/AlaRS common domain 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
CarD-like TRCF domain-like 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
HAMP domain-like Nucleotide cyclase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Voltage-gated potassium channels cAMP-binding domain-like 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
Homeodomain-like Probable bacterial effector-binding domain 21
PK beta-barrel domain-like PK C-terminal domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Ribokinase-like Nucleotidylyl transferase 22
Urease, gamma-subunit Urease, beta-subunit 21
Nudix "Winged helix" DNA-binding domain 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Ferritin-like Ferritin-like 22
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Glutathione synthetase ATP-binding domain-like NAD(P)-binding Rossmann-fold domains 22
PDZ domain-like ClpP/crotonase 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Chaperone J-domain TPR-like 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
E set domains E set domains 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
CheW-like CheW-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 21
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 21
Nucleotide-binding domain Nucleotide-binding domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 22
2Fe-2S ferredoxin-like Nucleotide cyclase 21
beta-Roll beta-Roll 22
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 21
Nucleotidyltransferase ACT-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
MalF N-terminal region-like MetI-like 21
CheW-like CheY-like 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 22
MetI-like MetI-like 22
Resolvase-like Homeodomain-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
HAMP domain-like GAF domain-like 21
SpoIIaa-like cAMP-binding domain-like 22
Caspase-like PGBD-like 21
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Translation proteins Translation proteins 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
PheT/TilS domain Putative DNA-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Periplasmic binding protein-like I Periplasmic binding protein-like II 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Class II aaRS and biotin synthetases Translation proteins 11
PLP-dependent transferases PLP-dependent transferases 11
Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Translation proteins PRC-barrel domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
HCP-like HCP-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 11
GroES-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Trypsin-like serine proteases 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
AhpD-like PYP-like sensor domain (PAS domain) 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Periplasmic binding protein-like II Cytochrome c 11
FAD-linked reductases, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
MetI-like Periplasmic binding protein-like II 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Sensory domain-like CheY-like 11
ISP domain Chaperone J-domain 11
4Fe-4S ferredoxins ADC-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Rhodanese/Cell cycle control phosphatase Ankyrin repeat 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
TPR-like alpha/beta-Hydrolases 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
NTF2-like Sec-C motif 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleotidyltransferase TGS-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
AF0104/ALDC/Ptd012-like AF0104/ALDC/Ptd012-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
PUA domain-like Double Clp-N motif 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
FAD-linked oxidoreductase ALDH-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Aldolase SIS domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Methionine synthase domain Methionine synthase activation domain-like 11
Hsp33 domain HSP33 redox switch-like 11
alpha/beta-Hydrolases LysM domain 11
FAD-linked reductases, C-terminal domain Thioredoxin-like 11
Molybdenum cofactor-binding domain Cytochrome c 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors TPR-like 11
DNA clamp DNA clamp 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
dUTPase-like dUTPase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Acid phosphatase/Vanadium-dependent haloperoxidase Pectin lyase-like 11
Ribonuclease H-like DNA/RNA polymerases 11
P-loop containing nucleoside triphosphate hydrolases DNA ligase/mRNA capping enzyme, catalytic domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Acetyl-CoA synthetase-like Protein kinase-like (PK-like) 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
beta-lactamase/transpeptidase-like SpoIIaa-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
ADC-like P-loop containing nucleoside triphosphate hydrolases 11
Pectin lyase-like Autotransporter 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Thioredoxin-like TPR-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
PreATP-grasp domain PreATP-grasp domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Molybdenum cofactor biosynthesis proteins Nucleotide-diphospho-sugar transferases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Transmembrane di-heme cytochromes Cytochrome c 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases Metallo-dependent phosphatases 11
HMA, heavy metal-associated domain HAD-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Mannose-binding lectins Ricin B-like lectins 11
ADC synthase Class I glutamine amidotransferase-like 11
Metallo-hydrolase/oxidoreductase SCP-like 11
TGS-like Class II aaRS ABD-related 11
Toll/Interleukin receptor TIR domain Calcium-dependent phosphotriesterase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Receptor-binding domain of short tail fibre protein gp12 Receptor-binding domain of short tail fibre protein gp12 11
NagB/RpiA/CoA transferase-like P-loop containing nucleoside triphosphate hydrolases 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Phase 1 flagellin Phase 1 flagellin 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Amine oxidase N-terminal region Amine oxidase catalytic domain 11
LysM domain LysM domain 11
Nucleic acid-binding proteins GAD domain-like 11
Galactose mutarotase-like E set domains 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
Galactose mutarotase-like (Trans)glycosidases 11
Sensory domain-like HAMP domain-like 11
PUA domain-like alpha/beta knot 11
HD-domain/PDEase-like ACT-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
TGS-like Class II aaRS and biotin synthetases 11
E set domains Autotransporter 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
Ribonuclease H-like RuvA domain 2-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain GAF domain-like 11
Periplasmic binding protein-like II vWA-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Trigger factor ribosome-binding domain FKBP-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Tex N-terminal region-like Ribonuclease H-like 11
Periplasmic binding protein-like II OmpA-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
YlxR-like L30e-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Protein kinase-like (PK-like) Adenine nucleotide alpha hydrolases-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
L30e-like alpha/beta knot 11
TROVE domain-like vWA-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
alpha/beta-Hydrolases NTF2-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
PilZ domain-like PilZ domain-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
DNase I-like Mannose-binding lectins 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
Radical SAM enzymes RuvA domain 2-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PLP-dependent transferases Rubredoxin-like 11
GAF domain-like EAL domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
Photosystem II reaction centre subunit H, transmembrane region PRC-barrel domain 11
Single hybrid motif TK C-terminal domain-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
PHP14-like Phospholipase D/nuclease 11
CheY-like Nucleotide cyclase 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
PGBD-like Trypsin-like serine proteases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Periplasmic binding protein-like II ACT-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Clc chloride channel CBS-domain pair 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
TGS-like ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
TPR-like Nucleotide-diphospho-sugar transferases 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
2Fe-2S ferredoxin-like ADC-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
HD-domain/PDEase-like TGS-like 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
P-loop containing nucleoside triphosphate hydrolases Dehydroquinate synthase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
TGS-like ThrRS/AlaRS common domain 11
Zinc beta-ribbon DNA primase core 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Metallo-dependent phosphatases DNA ligase/mRNA capping enzyme, catalytic domain 11
Calcium-dependent phosphotriesterase Isochorismatase-like hydrolases 11
FAD/NAD(P)-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
YrdC/RibB RibA-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
DNA-glycosylase Nudix 11
FliG FliG 11
Homeodomain-like Acetamidase/Formamidase-like 11
NTF2-like FAD/NAD(P)-binding domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
alpha/beta-Hydrolases beta-Roll 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
DHS-like NAD/FAD-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Sensory domain-like Nucleotide cyclase 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
(Trans)glycosidases (Trans)glycosidases 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
RNase III domain-like dsRNA-binding domain-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Thioesterase/thiol ester dehydrase-isomerase Isocitrate/Isopropylmalate dehydrogenase-like 11
Macro domain-like Zn-dependent exopeptidases 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Acid phosphatase/Vanadium-dependent haloperoxidase Autotransporter 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
RuvA domain 2-like JAB1/MPN domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Carbamate kinase-like ACT-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Ribosomal protein L6 Ribosomal protein L6 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Staphylococcal nuclease Ada DNA repair protein, N-terminal domain (N-Ada 10) 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Nudix Thiamin phosphate synthase 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Prokaryotic SH3-related domain Cysteine proteinases 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
GAF domain-like Phosphohistidine domain 11
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
SGNH hydrolase Autotransporter 11
TPR-like OmpA-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
GIY-YIG endonuclease RuvA domain 2-like 11
"Winged helix" DNA-binding domain Rubredoxin-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
PHP domain-like AF1531-like 11
Transmembrane di-heme cytochromes CBD9-like 11
Bacterial muramidases Lysozyme-like 11
HCP-like Trypsin-like serine proteases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Poly A polymerase C-terminal region-like ACT-like 11
Metallo-hydrolase/oxidoreductase NAD(P)-binding Rossmann-fold domains 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
PIN domain-like Ribonuclease H-like 11
RuvA domain 2-like BRCT domain 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
alpha-helical ferredoxin Nucleotide-binding domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
CheY-like PP2C-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
DeoB insert domain-like Alkaline phosphatase-like 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
LysM domain Duplicated hybrid motif 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Pectin lyase-like beta-Roll 11
ACT-like Formyltransferase 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
Ferritin-like HAD-like 11
Nucleic acid-binding proteins BRCT domain 11
Carbamate kinase-like PUA domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
LigB-like LigA subunit of an aromatic-ring-opening dioxygenase LigAB 11
PPK N-terminal domain-like PHP14-like 11
alpha-helical ferredoxin ARM repeat 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
Autotransporter OMPA-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
DNase I-like Ricin B-like lectins 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
FAD/NAD(P)-binding domain alpha/beta-Hydrolases 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Serine metabolism enzymes domain ACT-like 11
Nitrous oxide reductase, N-terminal domain Nitrous oxide reductase, N-terminal domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
MgtE N-terminal domain-like CBS-domain pair 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
HRDC-like HRDC-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
YjeF N-terminal domain-like Ribokinase-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PIN domain-like DNA/RNA polymerases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
"Winged helix" DNA-binding domain PK beta-barrel domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
YgfB-like Sec-C motif 11
Glycoside hydrolase/deacetylase UraD-Like 11
beta-lactamase/transpeptidase-like cAMP-binding domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Ribonuclease H-like HRDC-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
RuvA domain 2-like RuvA domain 2-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribonuclease H-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Formyltransferase FMT C-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PLP-dependent transferases PK beta-barrel domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ribbon-helix-helix Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Carbon-nitrogen hydrolase Carbon-nitrogen hydrolase 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
PK beta-barrel domain-like Rubredoxin-like 11
Ribbon-helix-helix ACT-like 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
YebC-like PFL-like glycyl radical enzymes 11
CBS-domain pair MgtE membrane domain-like 11
Sigma2 domain of RNA polymerase sigma factors TPR-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
alpha/beta-Hydrolases OsmC-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Ribbon-helix-helix CoaB-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 11
CheC-like Surface presentation of antigens (SPOA) 11
PreATP-grasp domain Methylglyoxal synthase-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Thioredoxin-like Nqo1 middle domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11

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