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Domain combination pairs in Shewanella frigidimarina NCIMB 400

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

781 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 501
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3518
Nucleotide cyclase EAL domain-like 3018
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2813
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2215
CheY-like C-terminal effector domain of the bipartite response regulators 201
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 175
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 156
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 157
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 154
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 154
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 154
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 154
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 143
PYP-like sensor domain (PAS domain) EAL domain-like 1412
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 126
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 113
Homodimeric domain of signal transducing histidine kinase CheY-like 119
Actin-like ATPase domain Actin-like ATPase domain 114
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 119
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1111
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 113
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 103
GroES-like NAD(P)-binding Rossmann-fold domains 102
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
Thioredoxin-like GST C-terminal domain-like 101
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 105
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 108
PYP-like sensor domain (PAS domain) CheY-like 98
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 91
ACT-like ACT-like 95
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 96
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
CheY-like Homeodomain-like 83
DPP6 N-terminal domain-like alpha/beta-Hydrolases 83
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Thiolase-like Thiolase-like 82
Alpha-L RNA-binding motif Pseudouridine synthase 81
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 72
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 73
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 73
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 73
Cytochrome c Cytochrome c 74
CheY-like P-loop containing nucleoside triphosphate hydrolases 72
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 73
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 76
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 76
GAF domain-like Nucleotide cyclase 75
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
(Trans)glycosidases Glycosyl hydrolase domain 65
TPR-like TPR-like 64
CheY-like Histidine-containing phosphotransfer domain, HPT domain 65
PurM N-terminal domain-like PurM C-terminal domain-like 52
PreATP-grasp domain Rudiment single hybrid motif 53
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 54
GAF domain-like EAL domain-like 53
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
CheY-like CheY-like 55
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 52
Nucleotidyltransferase HD-domain/PDEase-like 43
Translation proteins EF-G C-terminal domain-like 43
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
HAMP domain-like Nucleotide cyclase 42
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
TPR-like Nucleotide cyclase 42
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
CheY-like Nucleotide cyclase 44
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
Calcium ATPase, transduction domain A HAD-like 44
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
HAD-like Calcium ATPase, transmembrane domain M 44
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 42
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
E set domains (Trans)glycosidases 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
RuvA domain 2-like Nucleic acid-binding proteins 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
ClpP/crotonase ClpP/crotonase 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
GroES-like GroES-like 31
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
HAMP domain-like CheY-like 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
2Fe-2S ferredoxin-like alpha-helical ferredoxin 31
HMA, heavy metal-associated domain HAD-like 33
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
PDZ domain-like ClpP/crotonase 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
HD-domain/PDEase-like ACT-like 32
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
FKBP-like Triger factor/SurA peptide-binding domain-like 33
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
E set domains Glycosyl hydrolase domain 32
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
Periplasmic binding protein-like II Nucleotide cyclase 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
MetI-like MetI-like 31
GAF domain-like PYP-like sensor domain (PAS domain) 31
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 33
Resolvase-like Homeodomain-like 31
LeuD/IlvD-like Aconitase iron-sulfur domain 33
Nucleotidyltransferase ACT-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
PLP-binding barrel Alanine racemase C-terminal domain-like 31
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
CheW-like CheY-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 31
HAMP domain-like EAL domain-like 31
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
Single hybrid motif CoA-dependent acyltransferases 33
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
ACT-like NAD(P)-binding Rossmann-fold domains 22
Porins Porins 22
CBS-domain pair MgtE membrane domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Carbamate kinase-like PUA domain-like 21
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 21
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 21
MgtE N-terminal domain-like MgtE membrane domain-like 21
PreATP-grasp domain Single hybrid motif 22
Ribonuclease H-like DNA/RNA polymerases 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Lysozyme-like LysM domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Rudiment single hybrid motif Single hybrid motif 22
TSP type-3 repeat OmpA-like 22
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
Quinoprotein alcohol dehydrogenase-like EAL domain-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
PDZ domain-like PDZ domain-like 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Heme-dependent peroxidases Heme-dependent peroxidases 21
MgtE N-terminal domain-like CBS-domain pair 21
Nucleotidyltransferase TGS-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Single hybrid motif Single hybrid motif 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Lamin A/C globular tail domain DNase I-like 22
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
HD-domain/PDEase-like TGS-like 21
CheY-like EAL domain-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
DNA methylase specificity domain DNA methylase specificity domain 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 22
cAMP-binding domain-like CBS-domain pair 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 22
Trypsin-like serine proteases PDZ domain-like 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
TGS-like ACT-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Calcium-dependent phosphotriesterase EAL domain-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Multiheme cytochromes FAD/NAD(P)-binding domain 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
Calcium-dependent phosphotriesterase Nucleotide cyclase 22
PA domain Zn-dependent exopeptidases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
CheY-like HD-domain/PDEase-like 22
Galactose mutarotase-like E set domains 21
LysM domain LysM domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
HlyD-like secretion proteins HlyD-like secretion proteins 22
Zinc beta-ribbon Zinc beta-ribbon 22
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
Homeodomain-like Homeodomain-like 22
GAF domain-like Homeodomain-like 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
GAF domain-like HD-domain/PDEase-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Carbamate kinase-like ACT-like 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Kelch motif Kelch motif 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
CBS-domain pair Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Subtilisin-like Galactose-binding domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Cadherin-like vWA-like 11
Pectin lyase-like Pectin lyase-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Cupredoxins Pentapeptide repeat-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
ACP-like ACP-like 11
Cytidine deaminase-like Cytidine deaminase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
ACT-like Homeodomain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Thiolase-like ACP-like 11
L domain-like Protein kinase-like (PK-like) 11
vWA-like beta-Roll 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
FKBP-like FKBP-like 11
PreATP-grasp domain PreATP-grasp domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
Nucleic acid-binding proteins BRCT domain 11
Pseudouridine synthase PUA domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PurS-like PurM C-terminal domain-like 11
Translation proteins PRC-barrel domain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Cupredoxins Carboxypeptidase regulatory domain-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Ribonuclease H-like RuvA domain 2-like 11
PP2C-like Protein kinase-like (PK-like) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Homeodomain-like Ribonuclease H-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
TerB-like Chaperone J-domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Phosphotyrosine protein phosphatases I "Winged helix" DNA-binding domain 11
L9 N-domain-like Ribonuclease H-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GroEL-intermediate domain like GroEL apical domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Protease propeptides/inhibitors Subtilisin-like 11
Metallo-hydrolase/oxidoreductase SCP-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Zn-dependent exopeptidases Fibronectin type III 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
alpha/beta-Hydrolases P-loop containing nucleoside triphosphate hydrolases 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Formyltransferase FMT C-terminal domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
PLP-dependent transferases PLP-dependent transferases 11
PurS-like FGAM synthase PurL, linker domain 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Ribokinase-like Nucleotidylyl transferase 11
CheC-like Surface presentation of antigens (SPOA) 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Cupredoxins Cytochrome c 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Thioredoxin-like Thioredoxin-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Macro domain-like Zn-dependent exopeptidases 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Ribonuclease H-like HRDC-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Clavaminate synthase-like Sec-C motif 11
DNase I-like PKD domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
FAD-linked oxidoreductase ALDH-like 11
SpoIIaa-like Adenine nucleotide alpha hydrolases-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Sec-C motif 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Tricorn protease N-terminal domain PDZ domain-like 11
DNA-glycosylase Nudix 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Class II aaRS and biotin synthetases Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Mss4-like Peptide methionine sulfoxide reductase 11
E set domains E set domains 11
Cupredoxins Cupredoxins 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
PurS-like PurM N-terminal domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
YWTD domain PYP-like sensor domain (PAS domain) 11
TPR-like TolA/TonB C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
FliG FliG 11
Hsp33 domain HSP33 redox switch-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
Phage tail proteins gp5 N-terminal domain-like 11
GAF domain-like GAF domain-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Cadherin-like beta-Roll 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
WD40 repeat-like MetI-like 11
DPP6 N-terminal domain-like PDZ domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Phage tail proteins Phage tail proteins 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
"Winged helix" DNA-binding domain Ribokinase-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
post-HMGL domain-like Single hybrid motif 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
TGS-like Class II aaRS ABD-related 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
2Fe-2S ferredoxin-like ADC-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
PA domain Cadherin-like 11
GspK insert domain-like GspK insert domain-like 11
TATA-box binding protein-like DNA-glycosylase 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
ACT-like Formyltransferase 11
ACT-like Aldolase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
L30e-like alpha/beta knot 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
HD-domain/PDEase-like CBS-domain pair 11
Sensory domain-like Nucleotide cyclase 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
NTF2-like Sec-C motif 11
ITPase-like P-loop containing nucleoside triphosphate hydrolases 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
alpha-helical ferredoxin Nucleotide-binding domain 11
RmlC-like cupins RmlC-like cupins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Acid proteases Acid proteases 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
TPR-like HCP-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
Flavoproteins Riboflavin synthase domain-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
CheY-like CheC-like 11
PurS-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like JAB1/MPN domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Chorismate mutase II Aldolase 11
Periplasmic binding protein-like II ACT-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Periplasmic binding protein-like II Lysozyme-like 11
PIN domain-like DNA/RNA polymerases 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
TGS-like ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Putative DNA-binding domain Translation proteins 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Flavoproteins Rubredoxin-like 11
vWA-like TPR-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Translation proteins Translation proteins 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
gp5 N-terminal domain-like Phage fibre proteins 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
GAF domain-like CBS-domain pair 11
HRDC-like HRDC-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
Cadherin-like Cadherin-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
Aldolase post-HMGL domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
RuvA domain 2-like BRCT domain 11
TSP type-3 repeat alpha/beta-Hydrolases 11
Nucleotide-binding domain ADC-like 11
RmlC-like cupins Homeodomain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
Barwin-like endoglucanases Sporulation related repeat 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
(Phosphotyrosine protein) phosphatases II NAD kinase/diacylglycerol kinase-like 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
ALDH-like Dehydroquinate synthase-like 11
Pili subunits GspK insert domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Globin-like Riboflavin synthase domain-like 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Zinc beta-ribbon DNA primase core 11
TGS-like Class II aaRS and biotin synthetases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
GAF domain-like Phosphohistidine domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Translation proteins ThrRS/AlaRS common domain 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
OMPA-like TSP type-3 repeat 11
Homeodomain-like TATA-box binding protein-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
DPP6 N-terminal domain-like ClpP/crotonase 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
NHL repeat YWTD domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Homeodomain-like SIS domain 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Tricorn protease N-terminal domain ClpP/crotonase 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Phage tail proteins Phage fibre proteins 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Periplasmic binding protein-like II GlnB-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
PKD domain PKD domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
NHL repeat Nucleotide cyclase 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Aldolase Single hybrid motif 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Subtilisin-like Cadherin-like 11
Nucleic acid-binding proteins GAD domain-like 11
Ribokinase-like Ribokinase-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Fic-like "Winged helix" DNA-binding domain 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
YWTD domain EAL domain-like 11
Thiolase-like FabD/lysophospholipase-like 11
ClpP/crotonase Single hybrid motif 11
ClpP/crotonase PreATP-grasp domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PUA domain-like alpha/beta knot 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
alpha/beta-Hydrolases TPR-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Trigger factor ribosome-binding domain FKBP-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
ClpP/crotonase Rudiment single hybrid motif 11
NHL repeat EAL domain-like 11
Lamin A/C globular tail domain PKD domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
4Fe-4S ferredoxins ADC-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
HD-domain/PDEase-like Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
OMPA-like OmpA-like 11
H-NS histone-like proteins H-NS histone-like proteins 11
NHL repeat PYP-like sensor domain (PAS domain) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
C-terminal effector domain of the bipartite response regulators TPR-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
PA domain Subtilisin-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Chorismate mutase II ACT-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
PHP domain-like AF1531-like 11
Periplasmic binding protein-like II Aldolase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
Sensory domain-like Sensory domain-like 11
YrdC/RibB RibA-like 11
Homeodomain-like DNA-glycosylase 11
Lysozyme-like PGBD-like 11
Periplasmic binding protein-like II EAL domain-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
FabD/lysophospholipase-like ACP-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
YajQ-like YajQ-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
DeoB insert domain-like Alkaline phosphatase-like 11
4Fe-4S ferredoxins Radical SAM enzymes 11
Bacterial muramidases Lysozyme-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
YWTD domain Nucleotide cyclase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
PilZ domain-like PilZ domain-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
CarD-like TRCF domain-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
EAL domain-like CBS-domain pair 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
HAD-like Ribosomal protein S5 domain 2-like 11
RNase III domain-like dsRNA-binding domain-like 11
HisI-like all-alpha NTP pyrophosphatases 11
Ribokinase-like Thiamin phosphate synthase 11
Phase 1 flagellin Phase 1 flagellin 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Zn-dependent exopeptidases LysM domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
PIN domain-like Ribonuclease H-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11

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