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Domain combination pairs in Clostridium difficile 630

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

660 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 389
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2914
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 271
CheY-like C-terminal effector domain of the bipartite response regulators 261
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 198
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 195
Nucleotide cyclase EAL domain-like 188
Actin-like ATPase domain Actin-like ATPase domain 184
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 167
PTS system IIB component-like Phoshotransferase/anion transport protein 146
Homeodomain-like Homeodomain-like 136
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 122
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 123
PTS-regulatory domain, PRD PTS system IIB component-like 115
Calcium ATPase, transduction domain A HAD-like 116
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 112
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 116
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 112
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 107
HAD-like Calcium ATPase, transmembrane domain M 105
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 105
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
SacY-like RNA-binding domain PTS-regulatory domain, PRD 91
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 94
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 91
Homeodomain-like SIS domain 91
PYP-like sensor domain (PAS domain) Nucleotide cyclase 88
Putative DNA-binding domain Probable bacterial effector-binding domain 81
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 74
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 72
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 72
lambda repressor-like DNA-binding domains RmlC-like cupins 71
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 75
PYP-like sensor domain (PAS domain) Homeodomain-like 74
Glucose permease domain IIB Duplicated hybrid motif 71
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 61
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 62
(Trans)glycosidases Glycosyl hydrolase domain 64
P-loop containing nucleoside triphosphate hydrolases PTS-regulatory domain, PRD 64
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 62
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 61
Homeodomain-like Probable bacterial effector-binding domain 62
TPR-like TPR-like 64
PTS-regulatory domain, PRD PTS system fructose IIA component-like 64
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 61
"Winged helix" DNA-binding domain Chorismate lyase-like 61
P-loop containing nucleoside triphosphate hydrolases PTS system fructose IIA component-like 64
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 62
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 52
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 52
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 51
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
GroES-like NAD(P)-binding Rossmann-fold domains 51
Translation proteins EF-G C-terminal domain-like 52
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 54
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
P-loop containing nucleoside triphosphate hydrolases MOP-like 51
EF-G C-terminal domain-like EF-G C-terminal domain-like 52
Triger factor/SurA peptide-binding domain-like FKBP-like 54
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 53
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 52
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 55
"Winged helix" DNA-binding domain PLP-dependent transferases 51
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 44
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 44
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 42
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 44
"Winged helix" DNA-binding domain PTS system IIB component-like 42
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
Regulatory protein AraC Homeodomain-like 41
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 42
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 42
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 41
Rubredoxin-like Ferritin-like 42
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
Thiolase-like Thiolase-like 41
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
Sensory domain-like Nucleotide cyclase 43
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 41
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 41
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 43
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 43
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
4Fe-4S ferredoxins Fe-only hydrogenase 43
MetI-like MetI-like 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
tRNA-binding arm Class II aaRS and biotin synthetases 31
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 32
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Translation proteins Ribosomal protein S5 domain 2-like 31
PTS system fructose IIA component-like Phoshotransferase/anion transport protein 31
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Nucleotide cyclase GAF domain-like 33
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
PreATP-grasp domain Rudiment single hybrid motif 32
Flavoproteins 4Fe-4S ferredoxins 31
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
4Fe-4S ferredoxins Radical SAM enzymes 31
P-loop containing nucleoside triphosphate hydrolases Phoshotransferase/anion transport protein 31
Nucleic acid-binding proteins RuvA domain 2-like 33
PDZ domain-like Trypsin-like serine proteases 33
Lysozyme-like Cysteine proteinases 31
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 31
Aspartate/glutamate racemase Aspartate/glutamate racemase 31
Glycoside hydrolase/deacetylase Galactose mutarotase-like 31
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 31
PYP-like sensor domain (PAS domain) EAL domain-like 33
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 32
"Winged helix" DNA-binding domain GAF domain-like 31
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Metallo-dependent phosphatases Metallo-dependent phosphatases 31
"Winged helix" DNA-binding domain Actin-like ATPase domain 33
SH3-domain Cysteine proteinases 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 31
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 21
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 21
ACT-like ACT-like 22
FMN-linked oxidoreductases 4Fe-4S ferredoxins 21
TPR-like Nucleotide cyclase 22
RmlC-like cupins Homeodomain-like 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
HMA, heavy metal-associated domain HAD-like 22
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 21
Cell wall binding repeat Cell wall binding repeat 22
TK C-terminal domain-like 4Fe-4S ferredoxins 22
PreATP-grasp domain PreATP-grasp domain 21
Metallo-hydrolase/oxidoreductase Flavoproteins 22
(Trans)glycosidases Cyclophilin-like 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Nucleotide-diphospho-sugar transferases Cell wall binding repeat 22
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 22
4Fe-4S ferredoxins FMN-dependent nitroreductase-like 21
PYP-like sensor domain (PAS domain) GAF domain-like 22
MetI-like Periplasmic binding protein-like II 21
Sensory domain-like EAL domain-like 21
Sensory domain-like PYP-like sensor domain (PAS domain) 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
DNA-binding domain DNA breaking-rejoining enzymes 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
Phage tail proteins Cysteine proteinases 21
ALDH-like Dehydroquinate synthase-like 21
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 21
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 21
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 21
4Fe-4S ferredoxins Nitrite and sulphite reductase 4Fe-4S domain-like 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
lambda repressor-like DNA-binding domains TPR-like 22
PreATP-grasp domain Methylglyoxal synthase-like 21
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 21
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 21
Phospholipase D/nuclease Phospholipase D/nuclease 21
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 22
CheY-like Homeodomain-like 22
Aldolase post-HMGL domain-like 22
E set domains Glycosyl hydrolase domain 21
Nucleotide cyclase Nucleotide cyclase 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 22
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 22
Carbamate kinase-like ACT-like 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
L30e-like alpha/beta knot 21
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
NTF2-like NTF2-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Translation proteins ThrRS/AlaRS common domain 22
NAD(P)-linked oxidoreductase alpha-helical ferredoxin 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
CBS-domain pair P-loop containing nucleoside triphosphate hydrolases 22
E set domains (Trans)glycosidases 21
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Periplasmic binding protein-like II Nucleotide cyclase 22
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 21
Galactose mutarotase-like Six-hairpin glycosidases 21
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 22
MalF N-terminal region-like MetI-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Periplasmic binding protein-like II ACT-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Type I dockerin domain Galactose-binding domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Tex N-terminal region-like Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Thioredoxin-like 4Fe-4S ferredoxins 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
MFS general substrate transporter Tropomyosin 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
CheY-like Nucleotide cyclase 11
RuvA domain 2-like RuvA domain 2-like 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Ribonuclease PH domain 2-like ITPase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Translation proteins Translation proteins 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Cell-division inhibitor MinC, C-terminal domain Cell-division inhibitor MinC, C-terminal domain 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Nqo1 FMN-binding domain-like 4Fe-4S ferredoxins 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Nqo1C-terminal domain-like 4Fe-4S ferredoxins 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
HAD-like PLP-dependent transferases 11
Folate-binding domain PLP-dependent transferases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Translation proteins PRC-barrel domain 11
PDZ domain-like Radical SAM enzymes 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Subtilisin-like Subtilisin-like 11
Thioredoxin-like Six-hairpin glycosidases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
CBS-domain pair DHH phosphoesterases 11
YjeF N-terminal domain-like Ribokinase-like 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Galactose mutarotase-like (Trans)glycosidases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Type I dockerin domain Fibronectin type III 11
4Fe-4S ferredoxins DHS-like NAD/FAD-binding domain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Chelatase Tetrapyrrole methylase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
CarD-like TRCF domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Hsp33 domain HSP33 redox switch-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Nucleotide-diphospho-sugar transferases HCP-like 11
Rubredoxin-like FAD/NAD(P)-binding domain 11
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 11
Zinc beta-ribbon DNA primase core 11
CcmK-like CcmK-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Nucleotidyltransferase TGS-like 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
RuvA domain 2-like BRCT domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
NTF2-like PYP-like sensor domain (PAS domain) 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Sensory domain-like GAF domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Galactose-binding domain-like Galactose-binding domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
HIT-like HIT-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Bacterial adhesins Bacterial adhesins 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
DNA repair protein MutS, domain III SMR domain-like 11
SirA-like DsrEFH-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
L,D-transpeptidase catalytic domain-like Cell wall binding repeat 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
GroEL equatorial domain-like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
TPR-like Alkaline phosphatase-like 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Rudiment single hybrid motif Aldolase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
TATA-box binding protein-like DNA-glycosylase 11
CheY-binding domain of CheA CheW-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Tropomyosin Tropomyosin 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Periplasmic binding protein-like II EAL domain-like 11
PIN domain-like DNA/RNA polymerases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nucleic acid-binding proteins BRCT domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Sec-C motif Cyclin-like 11
Formyltransferase FMT C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
PUA domain-like alpha/beta knot 11
Aminomethyltransferase beta-barrel domain PLP-dependent transferases 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
"Winged helix" DNA-binding domain TrkA C-terminal domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
FliG FliG 11
L9 N-domain-like Ribonuclease H-like 11
Nqo1 middle domain-like 4Fe-4S ferredoxins 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
HprK N-terminal domain-like CBS-domain pair 11
PDZ domain-like ClpP/crotonase 11
AbrB/MazE/MraZ-like GAF domain-like 11
MFS general substrate transporter MFS general substrate transporter 11
PK beta-barrel domain-like PK C-terminal domain-like 11
FAD/NAD(P)-binding domain ISP domain 11
GAF domain-like EAL domain-like 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Ribonuclease H-like DNA/RNA polymerases 11
post-HMGL domain-like Single hybrid motif 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Trigger factor ribosome-binding domain FKBP-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Aldolase Single hybrid motif 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain Putative DNA-binding domain 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Chorismate mutase II ACT-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
RNase III domain-like dsRNA-binding domain-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins GAD domain-like 11
lambda repressor-like DNA-binding domains AbrB/MazE/MraZ-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
HD-domain/PDEase-like ACT-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
RCC1/BLIP-II RCC1/BLIP-II 11
MFS general substrate transporter P-loop containing nucleoside triphosphate hydrolases 11
Tetrapyrrole methylase HemD-like 11
Fibronectin type III Galactose-binding domain-like 11
Homeodomain-like Acyl-CoA N-acyltransferases (Nat) 11
Translation proteins "Winged helix" DNA-binding domain 11
GAF domain-like PP2C-like 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Putative DNA-binding domain Periplasmic binding protein-like II 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Thioredoxin-like (Trans)glycosidases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Flavoproteins Rubredoxin-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
2Fe-2S ferredoxin-like Actin-like ATPase domain 11
Nucleotide-diphospho-sugar transferases TPR-like 11
Ribonuclease H-like RuvA domain 2-like 11
"Winged helix" DNA-binding domain HRDC-like 11
HD-domain/PDEase-like TGS-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
TGS-like Class II aaRS and biotin synthetases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Rubredoxin-like Superoxide reductase-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PreATP-grasp domain Single hybrid motif 11
HprK N-terminal domain-like DHH phosphoesterases 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
RmlC-like cupins ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Flavoproteins FAD/NAD(P)-binding domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nucleotidyltransferase ACT-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
MFS general substrate transporter "Winged helix" DNA-binding domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
HCP-like HCP-like 11
PrpR receptor domain-like Homeodomain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
"Winged helix" DNA-binding domain PRTase-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Cysteine proteinases P-loop containing nucleoside triphosphate hydrolases 11
Acyl-CoA N-acyltransferases (Nat) SCP-like 11
HisI-like all-alpha NTP pyrophosphatases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PheT/TilS domain Putative DNA-binding domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Rudiment single hybrid motif Single hybrid motif 11
Rubredoxin-like FMN-linked oxidoreductases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Macro domain-like Zn-dependent exopeptidases 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
4Fe-4S ferredoxins Adenine nucleotide alpha hydrolases-like 11
MgtE N-terminal domain-like CBS-domain pair 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
GAF domain-like GAF domain-like 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
TGS-like Class II aaRS ABD-related 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
YojJ-like RuvA domain 2-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Ribosomal protein S5 domain 2-like ITPase-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Smc hinge domain Tropomyosin 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
Tricorn protease N-terminal domain alpha/beta-Hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
NTF2-like Nucleotide cyclase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Peptide methionine sulfoxide reductase Mss4-like 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
YrdC/RibB RibA-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
PreATP-grasp domain post-HMGL domain-like 11
PreATP-grasp domain Aldolase 11
Thioredoxin-like Nqo1C-terminal domain-like 11
ThrRS/AlaRS common domain P-loop containing nucleoside triphosphate hydrolases 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Sec-C motif Creatinase/aminopeptidase 11
Class II aaRS and biotin synthetases Translation proteins 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Bacterial adhesins Cna protein B-type domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Nucleotidylyl transferase tRNA-binding arm 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
Outer membrane efflux proteins (OEP) Outer membrane efflux proteins (OEP) 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
PIN domain-like Ribonuclease H-like 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
PK C-terminal domain-like Phosphohistidine domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
CBS-domain pair Homeodomain-like 11
CBS-domain pair MgtE membrane domain-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
TGS-like ThrRS/AlaRS common domain 11
DnaD domain-like DnaD domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Thioredoxin-like Nqo1 middle domain-like 11
L,D-transpeptidase pre-catalytic domain-like L,D-transpeptidase catalytic domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
2Fe-2S ferredoxin-like Fe-only hydrogenase 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Zinc beta-ribbon P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
TGS-like ACT-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PK beta-barrel domain-like Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Metallo-hydrolase/oxidoreductase FAD/NAD(P)-binding domain 11
DNA clamp DNA clamp 11
Chorismate mutase II Periplasmic binding protein-like II 11
"Winged helix" DNA-binding domain CBS-domain pair 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
HRDC-like HRDC-like 11
SH3-domain SH3-domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11

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