SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Domain combination pairs in Campylobacter lari RM2100

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

401 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1510
Actin-like ATPase domain Actin-like ATPase domain 74
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 72
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 73
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 65
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
PurM N-terminal domain-like PurM C-terminal domain-like 52
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 52
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 44
Cytochrome c Cytochrome c 42
Formyltransferase FMT C-terminal domain-like 41
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 44
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 41
CheY-like C-terminal effector domain of the bipartite response regulators 41
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
TPR-like TPR-like 44
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 41
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 33
Translation proteins EF-G C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 32
Thiolase-like Thiolase-like 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
PreATP-grasp domain Rudiment single hybrid motif 32
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 22
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
HAD-like Calcium ATPase, transmembrane domain M 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
ACT-like ACT-like 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Triger factor/SurA peptide-binding domain-like FKBP-like 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
Calcium ATPase, transduction domain A HAD-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
HMA, heavy metal-associated domain HAD-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Nucleic acid-binding proteins RuvA domain 2-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 22
CheC-like Surface presentation of antigens (SPOA) 22
CheW-like CheY-like 22
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 22
Aldolase AFP III-like domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Nucleotidyltransferase ACT-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 22
PDZ domain-like PDZ domain-like 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleotidyltransferase Formyltransferase 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
CarD-like TRCF domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Periplasmic binding protein-like II ACT-like 11
DNA methylase specificity domain DNA methylase specificity domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Tropomyosin OmpA-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Class II aaRS and biotin synthetases Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PheT/TilS domain Putative DNA-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Aldolase post-HMGL domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Multiheme cytochromes Transmembrane di-heme cytochromes 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Fibronectin type III Fibronectin type III 11
PIN domain-like Ribonuclease H-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
P-loop containing nucleoside triphosphate hydrolases MOP-like 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Zinc beta-ribbon Zinc beta-ribbon 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
RuvA domain 2-like BRCT domain 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Chorismate mutase II Periplasmic binding protein-like II 11
DsbB-like NHL repeat 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
GroEL-intermediate domain like GroEL apical domain-like 11
Translation proteins Translation proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L6 Ribosomal protein L6 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Trypsin-like serine proteases PDZ domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Rhodanese/Cell cycle control phosphatase Multiheme cytochromes 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
HD-domain/PDEase-like TGS-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
OMPA-like OmpA-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
CheY-like CheY-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Zinc beta-ribbon DNA primase core 11
Nucleic acid-binding proteins BRCT domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Carbamate kinase-like ACT-like 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like Nucleotidylyl transferase 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
MetI-like MetI-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
HAD-like Ribosomal protein S5 domain 2-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Aldolase Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Phase 1 flagellin Phase 1 flagellin 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Ribokinase-like Nucleotidylyl transferase 11
Lysozyme-like LysM domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
HisI-like all-alpha NTP pyrophosphatases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
HD-domain/PDEase-like ACT-like 11
FliG FliG 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
TerB-like Chaperone J-domain 11
PIN domain-like DNA/RNA polymerases 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain PreATP-grasp domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Translation proteins Ribosomal protein S5 domain 2-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Chorismate mutase II ACT-like 11
post-HMGL domain-like Single hybrid motif 11
Cupredoxins Cupredoxins 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Rubredoxin-like Ferritin-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
SirA-like DsrEFH-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
PDZ domain-like ClpP/crotonase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Poly A polymerase C-terminal region-like Formyltransferase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
DNA clamp DNA clamp 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
RNase III domain-like dsRNA-binding domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
CBS-domain pair MgtE membrane domain-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
S-adenosyl-L-methionine-dependent methyltransferases DNA methylase specificity domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
YajQ-like YajQ-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Rhodanese/Cell cycle control phosphatase Transmembrane di-heme cytochromes 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
PHP14-like Phospholipase D/nuclease 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Translation proteins ThrRS/AlaRS common domain 11
CheY-like Nucleotide cyclase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleotidyltransferase TGS-like 11
Poly A polymerase C-terminal region-like ACT-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
YjeF N-terminal domain-like Ribokinase-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
L30e-like alpha/beta knot 11
Macro domain-like Zn-dependent exopeptidases 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Rubredoxin-like Rubredoxin-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
YrdC/RibB RibA-like 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Barwin-like endoglucanases Sporulation related repeat 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
Serine metabolism enzymes domain ACT-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
FAD-linked oxidoreductase ALDH-like 11
TGS-like ACT-like 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Nucleic acid-binding proteins GAD domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases Protein kinase-like (PK-like) 11
ACT-like Formyltransferase 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
PPK N-terminal domain-like PHP14-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribonuclease H-like DNA/RNA polymerases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Periplasmic binding protein-like II GlnB-like 11
CheY-like Homeodomain-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
MgtE N-terminal domain-like CBS-domain pair 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 11
GroEL equatorial domain-like GroEL-intermediate domain like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]