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Domain combination pairs in Verminephrobacter eiseniae EF01-2

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

692 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 592
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 5713
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 424
P-loop containing nucleoside triphosphate hydrolases MOP-like 311
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 304
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 252
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 245
"Winged helix" DNA-binding domain GAF domain-like 212
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 214
Thiolase-like Thiolase-like 203
Actin-like ATPase domain Actin-like ATPase domain 187
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 177
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 173
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 166
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 161
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 166
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 146
GroES-like NAD(P)-binding Rossmann-fold domains 142
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1410
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 133
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 133
Enolase N-terminal domain-like Enolase C-terminal domain-like 132
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 122
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 122
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 112
PreATP-grasp domain Rudiment single hybrid motif 114
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 114
ISP domain Bet v1-like 103
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 103
Homeodomain-like Homeodomain-like 95
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 91
CheY-like C-terminal effector domain of the bipartite response regulators 92
Homeodomain-like Ribonuclease H-like 91
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
ClpP/crotonase ClpP/crotonase 82
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
Thioredoxin-like GST C-terminal domain-like 81
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 81
Homeodomain-like SIS domain 82
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 84
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
Rudiment single hybrid motif Single hybrid motif 73
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 76
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 73
PreATP-grasp domain Single hybrid motif 73
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 75
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 75
Glutathione synthetase ATP-binding domain-like Single hybrid motif 73
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 73
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 75
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 73
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 73
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 75
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
"Winged helix" DNA-binding domain Chorismate lyase-like 61
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 62
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 64
DNA methylase specificity domain DNA methylase specificity domain 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 54
"Winged helix" DNA-binding domain PLP-dependent transferases 51
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 52
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 54
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
Alpha-L RNA-binding motif Pseudouridine synthase 52
PYP-like sensor domain (PAS domain) Nucleotide cyclase 53
Translation proteins EF-G C-terminal domain-like 53
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 54
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 52
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 52
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
Class I glutamine amidotransferase-like Homeodomain-like 42
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 42
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
PYP-like sensor domain (PAS domain) EAL domain-like 42
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 42
FKBP-like Triger factor/SurA peptide-binding domain-like 44
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Nucleotide cyclase EAL domain-like 42
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 43
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 41
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 44
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 41
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 44
Cytochrome c Cytochrome c 42
ACT-like ACT-like 44
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 31
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 31
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nucleic acid-binding proteins RuvA domain 2-like 33
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 31
MetI-like MetI-like 32
Calcium ATPase, transduction domain A HAD-like 33
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
HAD-like Calcium ATPase, transmembrane domain M 33
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
HD-domain/PDEase-like Nucleotidyltransferase 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
CheY-like Homeodomain-like 32
lambda repressor-like DNA-binding domains RmlC-like cupins 31
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 31
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 32
Cyclophilin-like PH0987 N-terminal domain-like 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
L30e-like alpha/beta knot 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
HD-domain/PDEase-like TGS-like 22
alpha-helical ferredoxin Nucleotide-binding domain 22
CheW-like CheY-like 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
2Fe-2S ferredoxin-like ADC-like 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
ACP-like S-adenosyl-L-methionine-dependent methyltransferases 22
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
ACP-like CoA-dependent acyltransferases 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Regulatory protein AraC Homeodomain-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
CoA-dependent acyltransferases CoA-dependent acyltransferases 22
Trypsin-like serine proteases PDZ domain-like 22
GroES-like GroES-like 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
ACP-like ACP-like 22
Single hybrid motif CoA-dependent acyltransferases 21
GAF domain-like Homeodomain-like 22
GroEL equatorial domain-like GroEL apical domain-like 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
MFS general substrate transporter MFS general substrate transporter 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
MoeA N-terminal region -like MoeA C-terminal domain-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
HMA, heavy metal-associated domain HAD-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
GroEL-intermediate domain like GroEL apical domain-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Ribonuclease H-like DNA/RNA polymerases 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Translation proteins ThrRS/AlaRS common domain 22
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 21
LeuD/IlvD-like Aconitase iron-sulfur domain 22
Nucleotidyltransferase TGS-like 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 22
HD-domain/PDEase-like ACT-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleotidyltransferase ACT-like 22
TPR-like TPR-like 22
Homodimeric domain of signal transducing histidine kinase CheY-like 22
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 22
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Phospholipase D/nuclease Phospholipase D/nuclease 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
CheY-like P-loop containing nucleoside triphosphate hydrolases 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Aldolase AFP III-like domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
FliG FliG 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Nucleotidyltransferase DNA methylase specificity domain 11
FAD-linked oxidoreductase ALDH-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
HPr-like Phosphohistidine domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
TGS-like ThrRS/AlaRS common domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Thiolase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
TGS-like Class II aaRS ABD-related 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Thiolase-like ACP-like 11
FabD/lysophospholipase-like ACP-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Starch-binding domain-like Carboxypeptidase regulatory domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
Nudix Metallo-hydrolase/oxidoreductase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
DNA-glycosylase Nudix 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase S-adenosyl-L-methionine-dependent methyltransferases 11
"Winged helix" DNA-binding domain MOP-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Nucleotidylyl transferase YegP-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
Glycoside hydrolase/deacetylase Glycoside hydrolase/deacetylase 11
RuvA domain 2-like JAB1/MPN domain 11
P-loop containing nucleoside triphosphate hydrolases Phospholipase D/nuclease 11
TGS-like Class II aaRS and biotin synthetases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Cyclophilin-like Cyclophilin-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Macro domain-like Zn-dependent exopeptidases 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
FabD/lysophospholipase-like alpha/beta-Hydrolases 11
EAL domain-like HD-domain/PDEase-like 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Quinoprotein alcohol dehydrogenase-like Cytochrome c 11
Acetyl-CoA synthetase-like GntR ligand-binding domain-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Putative DNA-binding domain Translation proteins 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Starch-binding domain-like Starch-binding domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
PK beta-barrel domain-like PK C-terminal domain-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PreATP-grasp domain ClpP/crotonase 11
(Trans)glycosidases Glycosyl hydrolase domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase alpha/beta-Hydrolases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
NTF2-like FAD/NAD(P)-binding domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
FabD/lysophospholipase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Translation proteins Translation proteins 11
Protein kinase-like (PK-like) Adenine nucleotide alpha hydrolases-like 11
PIN domain-like Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
PDZ domain-like PDZ domain-like 11
Starch-binding domain-like Integrin alpha N-terminal domain 11
PurS-like Class I glutamine amidotransferase-like 11
TATA-box binding protein-like DNA-glycosylase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase CoA-dependent acyltransferases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Bacterial muramidases Lysozyme-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
PUA domain-like alpha/beta knot 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Terpenoid cyclases/Protein prenyltransferases Starch-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
ACP-like alpha/beta-Hydrolases 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
GAF domain-like GAF domain-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
ISP domain Riboflavin synthase domain-like 11
Periplasmic binding protein-like II ACT-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
MalF N-terminal region-like MetI-like 11
Methionine synthase domain Methionine synthase activation domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
LigA subunit of an aromatic-ring-opening dioxygenase LigAB LigB-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Zinc beta-ribbon DNA primase core 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
NAD(P)-binding Rossmann-fold domains alpha/beta-Hydrolases 11
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex alpha/beta-Hydrolases 11
4Fe-4S ferredoxins ADC-like 11
UraD-Like Bacterial exopeptidase dimerisation domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases PLP-dependent transferases 11
PDZ domain-like ClpP/crotonase 11
PIN domain-like DNA/RNA polymerases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
AraD/HMP-PK domain-like AraD/HMP-PK domain-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
ALDH-like ALDH-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Concanavalin A-like lectins/glucanases Class I glutamine amidotransferase-like 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Pili subunits Pili subunits 11
Nucleotide-binding domain Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
2Fe-2S ferredoxin-like FAD/NAD(P)-binding domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Resolvase-like Homeodomain-like 11
RNase III domain-like dsRNA-binding domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Chorismate mutase II Periplasmic binding protein-like II 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
RuvA domain 2-like BRCT domain 11
Homeodomain-like DNA-glycosylase 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
AraD/HMP-PK domain-like NAD(P)-binding Rossmann-fold domains 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains CoA-dependent acyltransferases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
YajQ-like YajQ-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Terpenoid cyclases/Protein prenyltransferases Carboxypeptidase regulatory domain-like 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Protein kinase-like (PK-like) 11
Chorismate mutase II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
TGS-like ACT-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
beta-Roll beta-Roll 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Thioesterase/thiol ester dehydrase-isomerase Acyl-CoA N-acyltransferases (Nat) 11
Thiolase-like FabD/lysophospholipase-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Thiolase-like CoA-dependent acyltransferases 11
CarD-like TRCF domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Fic-like "Winged helix" DNA-binding domain 11
Trigger factor ribosome-binding domain FKBP-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Nucleotidylyl transferase Nudix 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Thiolase-like alpha/beta-Hydrolases 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Thioredoxin-like Thioredoxin-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
ACT-like Formyltransferase 11
HPr-like Phosphoenolpyruvate/pyruvate domain 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
PH0987 N-terminal domain-like Single hybrid motif 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ribonuclease H-like HMA, heavy metal-associated domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
PHP14-like Phospholipase D/nuclease 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
PurS-like PurM C-terminal domain-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Nucleic acid-binding proteins NAD(P)-binding Rossmann-fold domains 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Single hybrid motif alpha/beta-Hydrolases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Thioredoxin-like Nqo1 middle domain-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
SMAD/FHA domain SMAD/FHA domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
ISP domain Ferredoxin reductase-like, C-terminal NADP-linked domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PIN domain-like Trimeric LpxA-like enzymes 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ribosomal protein L6 Ribosomal protein L6 11
Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 11
SIS domain Six-hairpin glycosidases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Rudiment single hybrid motif ClpP/crotonase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Cyclophilin-like Single hybrid motif 11
ACP-like Acetyl-CoA synthetase-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 11
DNA clamp DNA clamp 11
Acetyl-CoA synthetase-like ADC synthase 11
Trimeric LpxA-like enzymes RmlC-like cupins 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Acetyl-CoA synthetase-like "Winged helix" DNA-binding domain 11
Single hybrid motif ClpP/crotonase 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Thioredoxin-like TPR-like 11
Terpenoid cyclases/Protein prenyltransferases Integrin alpha N-terminal domain 11
Aldolase post-HMGL domain-like 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Bet v1-like NTF2-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
DAK1/DegV-like DhaL-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
CheC-like Surface presentation of antigens (SPOA) 11
PurS-like PurM N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Pili subunits RuvA domain 2-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Homeodomain-like TATA-box binding protein-like 11
P-loop containing nucleoside triphosphate hydrolases Ankyrin repeat 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Tex N-terminal region-like Ribonuclease H-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PYP-like sensor domain (PAS domain) CheY-like 11
P-loop containing nucleoside triphosphate hydrolases Amidase signature (AS) enzymes 11
alpha/beta-Hydrolases beta-Roll 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Lysozyme-like LysM domain 11
S-adenosyl-L-methionine-dependent methyltransferases alpha/beta-Hydrolases 11
YrdC/RibB RibA-like 11
Nucleic acid-binding proteins BRCT domain 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
PheT/TilS domain Putative DNA-binding domain 11
Cytidine deaminase-like alpha/beta-Hydrolases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Dimeric alpha+beta barrel NTF2-like 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
Carboxypeptidase regulatory domain-like Integrin alpha N-terminal domain 11
Carbamate kinase-like ACT-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Rudiment single hybrid motif Cyclophilin-like 11
PreATP-grasp domain Cyclophilin-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Nucleotidyltransferase Nucleotidyltransferase 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
ADC-like Riboflavin synthase domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
FabD/lysophospholipase-like CoA-dependent acyltransferases 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 11
Ribonuclease H-like RuvA domain 2-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins PRC-barrel domain 11
PurS-like FGAM synthase PurL, linker domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PreATP-grasp domain PreATP-grasp domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
HprK N-terminal domain-like PEP carboxykinase-like 11
UROD/MetE-like UROD/MetE-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PPK N-terminal domain-like PHP14-like 11
Formyltransferase FMT C-terminal domain-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
UraD-Like Zn-dependent exopeptidases 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like PUA domain-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases Trm112p-like 11
Cupredoxins Cytochrome c 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
FKBP-like FKBP-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11

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