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Domain combination pairs in Shewanella sediminis HAW-EB3

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

805 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 831
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4522
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3012
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 245
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 224
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 224
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 224
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 224
Nucleotide cyclase EAL domain-like 2111
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2114
CheY-like C-terminal effector domain of the bipartite response regulators 211
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 213
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 194
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 188
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1512
Actin-like ATPase domain Actin-like ATPase domain 154
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1412
Homodimeric domain of signal transducing histidine kinase CheY-like 1412
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 136
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 136
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1310
PYP-like sensor domain (PAS domain) EAL domain-like 127
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 116
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 113
Thiolase-like Thiolase-like 113
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 116
DPP6 N-terminal domain-like alpha/beta-Hydrolases 112
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1110
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 116
CheY-like Homeodomain-like 103
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 105
Thioredoxin-like GST C-terminal domain-like 91
PYP-like sensor domain (PAS domain) CheY-like 98
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 96
GAF domain-like Nucleotide cyclase 97
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 96
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 93
CheY-like P-loop containing nucleoside triphosphate hydrolases 92
P-loop containing nucleoside triphosphate hydrolases Translation proteins 96
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 83
CheY-like CheY-like 87
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 86
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 86
ACT-like ACT-like 74
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 75
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 74
TPR-like TPR-like 73
Alpha-L RNA-binding motif Pseudouridine synthase 71
Cytochrome c Cytochrome c 74
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 75
HlyD-like secretion proteins HlyD-like secretion proteins 73
GroES-like NAD(P)-binding Rossmann-fold domains 72
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 75
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
CheY-like Histidine-containing phosphotransfer domain, HPT domain 65
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 61
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 63
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Regulatory protein AraC Homeodomain-like 63
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 53
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 54
PurM N-terminal domain-like PurM C-terminal domain-like 52
Translation proteins EF-G C-terminal domain-like 53
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 51
GAF domain-like EAL domain-like 54
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 53
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 52
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
PreATP-grasp domain Rudiment single hybrid motif 53
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
TPR-like Nucleotide cyclase 52
HAMP domain-like CheY-like 54
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 51
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 53
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 53
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 42
Phospholipase D/nuclease Phospholipase D/nuclease 43
HD-domain/PDEase-like Nucleotidyltransferase 43
PDZ domain-like ClpP/crotonase 43
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 42
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
HD-domain/PDEase-like HD-domain/PDEase-like 43
Single hybrid motif CoA-dependent acyltransferases 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
CheY-like HD-domain/PDEase-like 42
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 43
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
HD-domain/PDEase-like ACT-like 43
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 42
Nucleotidyltransferase ACT-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
CheW-like CheY-like 42
FKBP-like Triger factor/SurA peptide-binding domain-like 44
GAF domain-like PYP-like sensor domain (PAS domain) 43
HAMP domain-like Nucleotide cyclase 43
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 42
CheY-like Nucleotide cyclase 42
alpha-helical ferredoxin Nucleotide-binding domain 44
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Formyltransferase FMT C-terminal domain-like 33
NTF2-like NTF2-like 31
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
Calcium ATPase, transduction domain A HAD-like 33
Porins Porins 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
RmlC-like cupins Homeodomain-like 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 32
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 32
Nucleotide-binding domain 4Fe-4S ferredoxins 33
Homeodomain-like Homeodomain-like 33
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Metallo-hydrolase/oxidoreductase SCP-like 31
HAD-like Calcium ATPase, transmembrane domain M 33
2Fe-2S ferredoxin-like alpha-helical ferredoxin 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 32
Translation proteins Ribosomal protein S5 domain 2-like 31
ClpP/crotonase ClpP/crotonase 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 31
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
HAMP domain-like PYP-like sensor domain (PAS domain) 33
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 32
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
PKD domain PKD domain 33
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 33
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 33
Nucleic acid-binding proteins RuvA domain 2-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
GAF domain-like Homeodomain-like 21
HD-domain/PDEase-like GAF domain-like 22
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 21
FliG FliG 21
Multiheme cytochromes Multiheme cytochromes 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
HMA, heavy metal-associated domain HAD-like 22
LeuD/IlvD-like Aconitase iron-sulfur domain 22
PP2C-like Protein kinase-like (PK-like) 21
Calcium-dependent phosphotriesterase EAL domain-like 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Pentapeptide repeat-like Pentapeptide repeat-like 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
alpha/beta-Hydrolases TPR-like 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
MetI-like MetI-like 21
cAMP-binding domain-like CBS-domain pair 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
PYP-like sensor domain (PAS domain) Homeodomain-like 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 21
Rudiment single hybrid motif Single hybrid motif 22
Nucleotidyltransferase TGS-like 21
"Winged helix" DNA-binding domain Ribokinase-like 21
Zinc beta-ribbon Zinc beta-ribbon 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
lambda repressor-like DNA-binding domains RmlC-like cupins 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
vWA-like beta-Roll 21
PGBD-like L,D-transpeptidase catalytic domain-like 21
Ribonuclease H-like DNA/RNA polymerases 22
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
HD-domain/PDEase-like TGS-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
Single hybrid motif Single hybrid motif 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Periplasmic binding protein-like II HD-domain/PDEase-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Flavoproteins Riboflavin synthase domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
MFS general substrate transporter MFS general substrate transporter 21
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 21
TGS-like ACT-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
Periplasmic binding protein-like II Nucleotide cyclase 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 22
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 21
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 22
Carbamate kinase-like ACT-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
PreATP-grasp domain Single hybrid motif 22
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
alpha-helical ferredoxin alpha-helical ferredoxin 22
alpha-helical ferredoxin 4Fe-4S ferredoxins 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
Homodimeric domain of signal transducing histidine kinase CheW-like 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
Nucleotidyltransferase substrate binding subunit/domain ACT-like 22
CheY-like Methylesterase CheB, C-terminal domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
PA domain Zn-dependent exopeptidases 21
Sensory domain-like Nucleotide cyclase 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Sensory domain-like PYP-like sensor domain (PAS domain) 22
PDZ domain-like PDZ domain-like 22
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
Metalloproteases ("zincins"), catalytic domain PKD domain 22
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 22
Lamin A/C globular tail domain DNase I-like 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Trypsin-like serine proteases PDZ domain-like 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Sensory domain-like Sensory domain-like 22
Homeodomain-like Ribonuclease H-like 21
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Calcium-dependent phosphotriesterase Nucleotide cyclase 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Cytidine deaminase-like Cytidine deaminase-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
DNA clamp DNA clamp 11
H-NS histone-like proteins H-NS histone-like proteins 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
TPR-like HCP-like 11
DNA-glycosylase Nudix 11
ACP-like ACP-like 11
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Acid phosphatase/Vanadium-dependent haloperoxidase OMPA-like 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Histidine-containing phosphotransfer domain, HPT domain HD-domain/PDEase-like 11
post-HMGL domain-like Single hybrid motif 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Protease propeptides/inhibitors Subtilisin-like 11
Ribonuclease H-like RuvA domain 2-like 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Class II aaRS and biotin synthetases Translation proteins 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
PurS-like PurM N-terminal domain-like 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
4Fe-4S ferredoxins ADC-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
alpha/beta-Hydrolases ClpP/crotonase 11
Hsp33 domain HSP33 redox switch-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Nucleic acid-binding proteins GAD domain-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
ACT-like Aldolase 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
HisI-like all-alpha NTP pyrophosphatases 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
L30e-like alpha/beta knot 11
ClpP/crotonase NfeD domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Phase 1 flagellin Phase 1 flagellin 11
Soluble quinoprotein glucose dehydrogenase EAL domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
Pili subunits GspK insert domain-like 11
PHP domain-like AF1531-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
CheY-like CheC-like 11
Periplasmic binding protein-like II Aldolase 11
GroEL equatorial domain-like GroEL apical domain-like 11
Periplasmic binding protein-like II Lysozyme-like 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
HIT-like HIT-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins PRC-barrel domain 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
YrdC/RibB RibA-like 11
YrdC/RibB Actin-like ATPase domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
CheY-like "Winged helix" DNA-binding domain 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
CarD-like TRCF domain-like 11
Barwin-like endoglucanases Sporulation related repeat 11
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
LysM domain LysM domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
GAF domain-like CheY-like 11
HRDC-like HRDC-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
"Winged helix" DNA-binding domain HRDC-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
Tricorn protease N-terminal domain PDZ domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
YajQ-like YajQ-like 11
PurS-like FGAM synthase PurL, linker domain 11
alpha-helical ferredoxin ADC-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Lysozyme-like LysM domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
PIN domain-like Ribonuclease H-like 11
RuvA domain 2-like BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Sec-C motif 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
FAD-linked oxidoreductase ALDH-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
TSP type-3 repeat OmpA-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PUA domain-like alpha/beta knot 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Nucleotide-binding domain ADC-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Periplasmic binding protein-like II GlnB-like 11
DPP6 N-terminal domain-like ClpP/crotonase 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
YjeF N-terminal domain-like Ribokinase-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
Integrin alpha N-terminal domain Integrin alpha N-terminal domain 11
Cupredoxins Cytochrome c 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
HAMP domain-like GAF domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
(Trans)glycosidases E set domains 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Putative DNA-binding domain Translation proteins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Mss4-like Peptide methionine sulfoxide reductase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CheY-like PP2C-like 11
(Trans)glycosidases Galactose mutarotase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Acid proteases Acid proteases 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Chorismate mutase II Aldolase 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Ribonuclease H-like HRDC-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
GspK insert domain-like GspK insert domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
TATA-box binding protein-like DNA-glycosylase 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Purple acid phosphatase, N-terminal domain Fibronectin type III 11
Subtilisin-like Galactose-binding domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Tex N-terminal region-like RuvA domain 2-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Metalloproteases ("zincins"), catalytic domain Fibronectin type III 11
ClpP/crotonase Rudiment single hybrid motif 11
HAD-like Ribosomal protein S5 domain 2-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
LysM domain L,D-transpeptidase catalytic domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
Calcium-dependent phosphotriesterase Soluble quinoprotein glucose dehydrogenase 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Lysozyme-like PGBD-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Nucleic acid-binding proteins BRCT domain 11
HAMP domain-like EAL domain-like 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Proton glutamate symport protein Periplasmic binding protein-like II 11
Collagen-binding domain Galactose-binding domain-like 11
FKBP-like FKBP-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like DNA-glycosylase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
PurS-like PurM C-terminal domain-like 11
HD-domain/PDEase-like CBS-domain pair 11
Zinc beta-ribbon DNA primase core 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PKD domain Integrin alpha N-terminal domain 11
Aldolase Single hybrid motif 11
CBS-domain pair MgtE membrane domain-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Ribosomal protein L6 Ribosomal protein L6 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
FMT C-terminal domain-like ClpP/crotonase 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Thiolase-like ACP-like 11
Periplasmic binding protein-like II ACT-like 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Tricorn protease N-terminal domain ClpP/crotonase 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Ribokinase-like Thiamin phosphate synthase 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Zn-dependent exopeptidases Class I glutamine amidotransferase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Hemerythrin-like Nucleotide cyclase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Homeodomain-like TATA-box binding protein-like 11
Aldolase AFP III-like domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like ADC-like 11
Galactose-binding domain-like Galactose mutarotase-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
ACT-like Homeodomain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
PreATP-grasp domain PreATP-grasp domain 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
beta-N-acetylhexosaminidase-like domain E set domains 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Carbohydrate-binding domain E set domains 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
ALDH-like Dehydroquinate synthase-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Formyltransferase NAD(P)-binding Rossmann-fold domains 11
Carbamate kinase-like PUA domain-like 11
vWA-like TPR-like 11
GAF domain-like GAF domain-like 11
vWA-like Quinoprotein alcohol dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
cAMP-binding domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Soluble quinoprotein glucose dehydrogenase Nucleotide cyclase 11
Homeodomain-like SIS domain 11
Pectin lyase-like Cytochrome c 11
Subtilisin-like PA domain 11
ACT-like Formyltransferase 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
TGS-like Class II aaRS and biotin synthetases 11
Thiolase-like FabD/lysophospholipase-like 11
Calcium-dependent phosphotriesterase Quinoprotein alcohol dehydrogenase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
MgtE N-terminal domain-like CBS-domain pair 11
Quinoprotein alcohol dehydrogenase-like EAL domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
ClpP/crotonase PreATP-grasp domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Tricorn protease domain 2 alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Clavaminate synthase-like Sec-C motif 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Periplasmic binding protein-like II CheY-like 11
CheC-like Surface presentation of antigens (SPOA) 11
Multiheme cytochromes FAD/NAD(P)-binding domain 11
PIN domain-like DNA/RNA polymerases 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Translation proteins Translation proteins 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Translation proteins ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Subtilisin-like Collagen-binding domain 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
4Fe-4S ferredoxins Radical SAM enzymes 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Formyltransferase ClpP/crotonase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
RNase III domain-like dsRNA-binding domain-like 11
Flavoproteins Rubredoxin-like 11
RuvA domain 2-like JAB1/MPN domain 11
TGS-like ThrRS/AlaRS common domain 11
beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidyltransferase Nucleotidyltransferase 11
PreATP-grasp domain Methylglyoxal synthase-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
WD40 repeat-like MetI-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Trigger factor ribosome-binding domain FKBP-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Fic-like "Winged helix" DNA-binding domain 11
Galactose-binding domain-like (Trans)glycosidases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
L9 N-domain-like Ribonuclease H-like 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Restriction endonuclease-like RuvA domain 2-like 11
Carbohydrate-binding domain (Trans)glycosidases 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
NTF2-like Sec-C motif 11
TGS-like Class II aaRS ABD-related 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Calcium-dependent phosphotriesterase Calcium-dependent phosphotriesterase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Homeodomain-like Probable bacterial effector-binding domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Protease propeptides/inhibitors Collagen-binding domain 11
Metallo-dependent phosphatases Fibronectin type III 11
FabD/lysophospholipase-like ACP-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Thioredoxin-like TPR-like 11
C-terminal effector domain of the bipartite response regulators DPP6 N-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
HD-domain/PDEase-like Nucleotide cyclase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Zn-dependent exopeptidases LysM domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
Ribbon-helix-helix ACT-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Macro domain-like Zn-dependent exopeptidases 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
PKD domain Fibronectin type III 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
PurS-like Class I glutamine amidotransferase-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Starch-binding domain-like Porins 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Sensory domain-like HD-domain/PDEase-like 11
Bacterial muramidases Lysozyme-like 11
CheY-like EAL domain-like 11
Pseudouridine synthase PUA domain-like 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
RmlC-like cupins RmlC-like cupins 11
ClpP/crotonase Single hybrid motif 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Pentapeptide repeat-like Voltage-gated potassium channels 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Acid proteases Glutathione synthetase ATP-binding domain-like 11
alpha-helical ferredoxin Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
UROD/MetE-like UROD/MetE-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
FMT C-terminal domain-like NAD(P)-binding Rossmann-fold domains 11
PheT/TilS domain Putative DNA-binding domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Soluble quinoprotein glucose dehydrogenase PYP-like sensor domain (PAS domain) 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Protease propeptides/inhibitors Galactose-binding domain-like 11
ACT-like PYP-like sensor domain (PAS domain) 11
GroES-like GroES-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Thioredoxin-like Thioredoxin-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
DPP6 N-terminal domain-like PDZ domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
PLP-dependent transferases PLP-dependent transferases 11
GAF domain-like Phosphohistidine domain 11
Aldolase post-HMGL domain-like 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Purine and uridine phosphorylases P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Chorismate mutase II ACT-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11

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