SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Domain combination pairs in Shewanella pealeana ATCC 700345

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

785 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 631
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3115
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3118
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 236
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 195
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 195
CheY-like C-terminal effector domain of the bipartite response regulators 192
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 195
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 195
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 195
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 173
Nucleotide cyclase EAL domain-like 1710
Actin-like ATPase domain Actin-like ATPase domain 154
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 146
Thiolase-like Thiolase-like 133
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 133
PYP-like sensor domain (PAS domain) Nucleotide cyclase 129
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 126
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 113
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 116
Homodimeric domain of signal transducing histidine kinase CheY-like 109
DPP6 N-terminal domain-like alpha/beta-Hydrolases 103
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 102
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 109
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 105
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
P-loop containing nucleoside triphosphate hydrolases Translation proteins 107
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 97
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 95
PYP-like sensor domain (PAS domain) EAL domain-like 96
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 96
Thioredoxin-like GST C-terminal domain-like 91
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
CheY-like Homeodomain-like 82
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 82
ACT-like ACT-like 85
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 83
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 88
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 74
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 77
TPR-like TPR-like 73
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 77
Alpha-L RNA-binding motif Pseudouridine synthase 71
CheY-like P-loop containing nucleoside triphosphate hydrolases 71
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 71
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 75
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
GroES-like NAD(P)-binding Rossmann-fold domains 62
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 62
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 62
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 61
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
CheY-like Histidine-containing phosphotransfer domain, HPT domain 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 64
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
PurM N-terminal domain-like PurM C-terminal domain-like 52
CheY-like CheY-like 55
Translation proteins EF-G C-terminal domain-like 53
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 52
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 53
OMPA-like OmpA-like 52
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
TPR-like Nucleotide cyclase 52
PYP-like sensor domain (PAS domain) CheY-like 55
Cytochrome c Cytochrome c 54
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 41
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 42
HlyD-like secretion proteins HlyD-like secretion proteins 43
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 43
Regulatory protein AraC Homeodomain-like 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 42
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
CBS-domain pair FAD-binding/transporter-associated domain-like 41
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
PreATP-grasp domain Rudiment single hybrid motif 43
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 43
Homeodomain-like Homeodomain-like 43
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 43
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 41
Enolase N-terminal domain-like Enolase C-terminal domain-like 41
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 42
Nucleotidyltransferase ACT-like 43
TSP type-3 repeat OmpA-like 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
GAF domain-like Nucleotide cyclase 33
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 31
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 31
2Fe-2S ferredoxin-like alpha-helical ferredoxin 32
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 32
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 31
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 33
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
CheW-like CheY-like 31
Nucleotidyltransferase Poly A polymerase C-terminal region-like 33
RuvA domain 2-like Nucleic acid-binding proteins 33
Phospholipase D/nuclease Phospholipase D/nuclease 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 32
Metallo-hydrolase/oxidoreductase SCP-like 31
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Single hybrid motif CoA-dependent acyltransferases 33
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 33
HD-domain/PDEase-like ACT-like 32
HD-domain/PDEase-like Nucleotidyltransferase 32
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
ClpP/crotonase ClpP/crotonase 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
PDZ domain-like ClpP/crotonase 33
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
PLP-binding barrel Alanine racemase C-terminal domain-like 21
Riboflavin synthase domain-like Riboflavin synthase domain-like 21
Calcium ATPase, transduction domain A HAD-like 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 21
HD-domain/PDEase-like TGS-like 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Macro domain-like Zn-dependent exopeptidases 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
PDZ domain-like PDZ domain-like 22
Ribonuclease H-like DNA/RNA polymerases 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
HAD-like Calcium ATPase, transmembrane domain M 22
Zinc beta-ribbon Zinc beta-ribbon 22
Proton glutamate symport protein Periplasmic binding protein-like II 21
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
HMA, heavy metal-associated domain HAD-like 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 22
Nucleic acid-binding proteins Thioesterase/thiol ester dehydrase-isomerase 22
Trypsin-like serine proteases PDZ domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Translation proteins Ribosomal protein S5 domain 2-like 21
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 22
Multiheme cytochromes Multiheme cytochromes 21
TGS-like ACT-like 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 22
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 21
PGBD-like L,D-transpeptidase catalytic domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
HAMP domain-like CheY-like 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
CBS-domain pair MgtE membrane domain-like 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
RmlC-like cupins Homeodomain-like 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 22
"Winged helix" DNA-binding domain Ribokinase-like 21
PYP-like sensor domain (PAS domain) Homeodomain-like 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
MgtE N-terminal domain-like MgtE membrane domain-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
vWA-like TPR-like 22
Class I glutamine amidotransferase-like Homeodomain-like 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
alpha-helical ferredoxin Nucleotide-binding domain 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 21
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 22
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Nucleotidyltransferase substrate binding subunit/domain ACT-like 22
GroES-like GroES-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
TrkA C-terminal domain-like TrkA C-terminal domain-like 22
Aldolase post-HMGL domain-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
Single hybrid motif Single hybrid motif 22
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
DPP6 N-terminal domain-like DPP6 N-terminal domain-like 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Rudiment single hybrid motif Single hybrid motif 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
MgtE N-terminal domain-like CBS-domain pair 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
GAF domain-like EAL domain-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PreATP-grasp domain Single hybrid motif 22
FliG FliG 21
Nucleotidyltransferase TGS-like 21
GAF domain-like PYP-like sensor domain (PAS domain) 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
MetI-like MetI-like 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
CheY-like PP2C-like 21
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
Galactose-binding domain-like (Trans)glycosidases 22
Carbamate kinase-like ACT-like 22
Poly A polymerase C-terminal region-like ACT-like 11
Translation proteins ThrRS/AlaRS common domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Ribokinase-like Nucleotidylyl transferase 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
L9 N-domain-like Ribonuclease H-like 11
BRCT domain L domain-like 11
DPP6 N-terminal domain-like PDZ domain-like 11
Quinoprotein alcohol dehydrogenase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Chorismate mutase II ACT-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Nucleic acid-binding proteins GAD domain-like 11
PIN domain-like DNA/RNA polymerases 11
Tricorn protease N-terminal domain DPP6 N-terminal domain-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
4Fe-4S ferredoxins ADC-like 11
DPP6 N-terminal domain-like ClpP/crotonase 11
Nucleotide-binding domain Formate dehydrogenase/DMSO reductase, domains 1-3 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Nucleotidylyl transferase tRNA-binding arm 11
ISP domain Bet v1-like 11
Lysozyme-like PGBD-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Hsp33 domain HSP33 redox switch-like 11
Phase 1 flagellin Phase 1 flagellin 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
RuvA domain 2-like JAB1/MPN domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Periplasmic binding protein-like II CheY-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleotide-binding domain ADC-like 11
DPP6 N-terminal domain-like NHL repeat 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Methionine synthase domain Methionine synthase activation domain-like 11
Metallo-hydrolase/oxidoreductase Rubredoxin-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Periplasmic binding protein-like II GlnB-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
HIT-like HIT-like 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
CheY-like TPR-like 11
PilZ domain-like PilZ domain-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
ClpP/crotonase NfeD domain-like 11
(Trans)glycosidases Galactose mutarotase-like 11
Chorismate mutase II Aldolase 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
ClpP/crotonase PreATP-grasp domain 11
Thioredoxin-like Thioredoxin-like 11
ACP-like ACP-like 11
Carbohydrate-binding domain (Trans)glycosidases 11
GAF domain-like Homeodomain-like 11
Ribokinase-like Thiamin phosphate synthase 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
DNA-glycosylase Nudix 11
C-terminal effector domain of the bipartite response regulators NHL repeat 11
Cadherin-like beta-Roll 11
DPP6 N-terminal domain-like Composite domain of metallo-dependent hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
vWA-like beta-Roll 11
Calcium-dependent phosphotriesterase Nucleotide cyclase 11
CalX-like beta-Roll 11
FKBP-like FKBP-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Tex N-terminal region-like RuvA domain 2-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Galactose-binding domain-like Galactose mutarotase-like 11
Calcium-dependent phosphotriesterase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
MFS general substrate transporter ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Putative DNA-binding domain Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Cadherin-like vWA-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GIY-YIG endonuclease RuvA domain 2-like 11
PLP-dependent transferases Rhodanese/Cell cycle control phosphatase 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
FAD-linked oxidoreductase ALDH-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
PurS-like Class I glutamine amidotransferase-like 11
Barwin-like endoglucanases Sporulation related repeat 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
CheY-like Methylesterase CheB, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Quinoprotein alcohol dehydrogenase-like PYP-like sensor domain (PAS domain) 11
HAMP domain-like Nucleotide cyclase 11
GAF domain-like GAF domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Thiolase-like ACP-like 11
Translation proteins PRC-barrel domain 11
Calcium-dependent phosphotriesterase EAL domain-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Ribbon-helix-helix ACT-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
PreATP-grasp domain PreATP-grasp domain 11
PP2C-like Protein kinase-like (PK-like) 11
Sensory domain-like Nucleotide cyclase 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
alpha-helical ferredoxin 4Fe-4S ferredoxins 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
CheC-like Surface presentation of antigens (SPOA) 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase Calcium-dependent phosphotriesterase 11
MFS general substrate transporter Homodimeric domain of signal transducing histidine kinase 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Lysozyme-like LysM domain 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
PKD domain PKD domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
CBD9-like Homodimeric domain of signal transducing histidine kinase 11
Bacterial muramidases Lysozyme-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PA domain Subtilisin-like 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Ribonuclease H-like HRDC-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
LysM domain L,D-transpeptidase catalytic domain-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
L domain-like L domain-like 11
4Fe-4S ferredoxins Radical SAM enzymes 11
Periplasmic binding protein-like II Lysozyme-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Carbohydrate-binding domain E set domains 11
TGS-like Class II aaRS ABD-related 11
Homeodomain-like TATA-box binding protein-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Metalloproteases ("zincins"), catalytic domain ARM repeat 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Concanavalin A-like lectins/glucanases Sialidases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
CheY-like HD-domain/PDEase-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Trigger factor ribosome-binding domain FKBP-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
DPP6 N-terminal domain-like 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
Thiolase-like FabD/lysophospholipase-like 11
GAF domain-like Phosphohistidine domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases MoeA N-terminal region -like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
FabD/lysophospholipase-like ACP-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Sensory domain-like Sensory domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Homeodomain-like SIS domain 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Periplasmic binding protein-like II ACT-like 11
HAMP domain-like EAL domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
C-terminal domain of RNA polymerase alpha subunit Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Aldolase Single hybrid motif 11
GspK insert domain-like GspK insert domain-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Quinoprotein alcohol dehydrogenase-like Calcium-dependent phosphotriesterase 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Zn-dependent exopeptidases LysM domain 11
(Trans)glycosidases E set domains 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
YrdC/RibB RibA-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
RNase III domain-like dsRNA-binding domain-like 11
Calcium ATPase, transmembrane domain M SpoIIaa-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
ClpP/crotonase Rudiment single hybrid motif 11
TGS-like Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
alpha-helical ferredoxin Formate dehydrogenase/DMSO reductase, domains 1-3 11
YajQ-like YajQ-like 11
HD-domain/PDEase-like GAF domain-like 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
MFS general substrate transporter MFS general substrate transporter 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
YrdC/RibB Actin-like ATPase domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Sensory domain-like Periplasmic binding protein-like II 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
post-HMGL domain-like Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
Flavoproteins Rubredoxin-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
CheY-like CheC-like 11
FMN-binding split barrel "Winged helix" DNA-binding domain 11
beta-N-acetylhexosaminidase-like domain E set domains 11
PurS-like PurM C-terminal domain-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
L domain-like Protein kinase-like (PK-like) 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Metalloproteases ("zincins"), catalytic domain PKD domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
PurS-like FGAM synthase PurL, linker domain 11
ACT-like Aldolase 11
Nucleotidylyl transferase Riboflavin kinase-like 11
HisI-like all-alpha NTP pyrophosphatases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Acid proteases Glutathione synthetase ATP-binding domain-like 11
Putative isomerase YbhE MetI-like 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Homeodomain-like DNA-glycosylase 11
DNA clamp DNA clamp 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Acid proteases Acid proteases 11
Sensory domain-like HD-domain/PDEase-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Mss4-like Peptide methionine sulfoxide reductase 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Periplasmic binding protein-like II HD-domain/PDEase-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
CalX-like vWA-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
TATA-box binding protein-like DNA-glycosylase 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Aldolase AFP III-like domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
PA domain Zn-dependent exopeptidases 11
Cytidine deaminase-like Cytidine deaminase-like 11
Calcium-dependent phosphotriesterase PYP-like sensor domain (PAS domain) 11
Zinc beta-ribbon DNA primase core 11
YjeF N-terminal domain-like Ribokinase-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Nucleic acid-binding proteins BRCT domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Multiheme cytochromes FAD/NAD(P)-binding domain 11
Periplasmic binding protein-like II Aldolase 11
GroEL equatorial domain-like GroEL apical domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
HAD-like Ribosomal protein S5 domain 2-like 11
Starch-binding domain-like Porins 11
FMN-binding split barrel UbiD C-terminal domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Quinoprotein alcohol dehydrogenase-like Nucleotide cyclase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Tex N-terminal region-like Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
beta-Roll beta-Roll 11
ACT-like P-loop containing nucleoside triphosphate hydrolases 11
Thioredoxin-like TPR-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
PLP-dependent transferases PLP-dependent transferases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
DPP6 N-terminal domain-like Metallo-dependent hydrolases 11
CarD-like TRCF domain-like 11
cAMP-binding domain-like CBS-domain pair 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like Nucleotide-binding domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Quinoprotein alcohol dehydrogenase-like EAL domain-like 11
Pili subunits GspK insert domain-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
NTF2-like Sec-C motif 11
Acetoacetate decarboxylase-like FAD/NAD(P)-binding domain 11
DsbB-like NHL repeat 11
Zn-dependent exopeptidases Class I glutamine amidotransferase-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Formyltransferase FMT C-terminal domain-like 11
Tricorn protease N-terminal domain PDZ domain-like 11
HRDC-like HRDC-like 11
P-loop containing nucleoside triphosphate hydrolases Molybdenum cofactor biosynthesis proteins 11
LysM domain LysM domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Ribosomal protein L6 Ribosomal protein L6 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases GAD domain-like 11
Cupredoxins Cytochrome c 11
ClpP/crotonase Single hybrid motif 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
NTF2-like NTF2-like 11
H-NS histone-like proteins H-NS histone-like proteins 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Translation proteins "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
vWA-like 3-carboxy-cis,cis-mucoante lactonizing enzyme 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
OMPA-like TSP type-3 repeat 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
CBS-domain pair Nucleotide-diphospho-sugar transferases 11
C-terminal effector domain of the bipartite response regulators DPP6 N-terminal domain-like 11
HCP-like HCP-like 11
Flavoproteins Riboflavin synthase domain-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
RuvA domain 2-like BRCT domain 11
PUA domain-like alpha/beta knot 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Porins Porins 11
Tricorn protease N-terminal domain ClpP/crotonase 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Pseudouridine synthase PUA domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
L30e-like alpha/beta knot 11
Ribonuclease H-like RuvA domain 2-like 11
UROD/MetE-like UROD/MetE-like 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
P-loop containing nucleoside triphosphate hydrolases MoeA C-terminal domain-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
CheY-like Nucleotide cyclase 11
ALDH-like Dehydroquinate synthase-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
TGS-like ThrRS/AlaRS common domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
Nucleotidyltransferase Nucleotidyltransferase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
ClpP/crotonase Glutathione synthetase ATP-binding domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
PLP-dependent transferases Metallo-hydrolase/oxidoreductase 11
Pentapeptide repeat-like Voltage-gated potassium channels 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
CBD9-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
lambda repressor-like DNA-binding domains RmlC-like cupins 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
CalX-like Cadherin-like 11
EAL domain-like CBS-domain pair 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PurS-like PurM N-terminal domain-like 11
ACT-like Homeodomain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PIN domain-like Ribonuclease H-like 11
Carbamate kinase-like PUA domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Translation proteins Translation proteins 11
ACT-like PYP-like sensor domain (PAS domain) 11
alpha/beta-Hydrolases TPR-like 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
alpha-helical ferredoxin ADC-like 11
CheY-like EAL domain-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Beta-D-glucan exohydrolase, C-terminal domain Galactose-binding domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
2Fe-2S ferredoxin-like ADC-like 11
CBS-domain pair Nucleotide cyclase 11
(Trans)glycosidases Carbohydrate binding domain 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]