SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Domain combination pairs in Helicobacter mustelae 12198

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

359 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 127
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 104
Actin-like ATPase domain Actin-like ATPase domain 84
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
DNA methylase specificity domain DNA methylase specificity domain 51
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 54
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 52
PurM N-terminal domain-like PurM C-terminal domain-like 42
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 44
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 44
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 42
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 44
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 43
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 44
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 44
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 42
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 44
TPR-like TPR-like 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 32
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 31
CheW-like CheY-like 33
Translation proteins EF-G C-terminal domain-like 32
CheY-like C-terminal effector domain of the bipartite response regulators 31
HAD-like Calcium ATPase, transmembrane domain M 32
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 32
HMA, heavy metal-associated domain HAD-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Calcium ATPase, transduction domain A HAD-like 32
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 32
Cytochrome c Cytochrome c 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Aldolase AFP III-like domain 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Nucleic acid-binding proteins Nucleic acid-binding proteins 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Triger factor/SurA peptide-binding domain-like FKBP-like 22
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
PreATP-grasp domain Rudiment single hybrid motif 21
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 21
Thiolase-like Thiolase-like 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 21
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Urease, gamma-subunit Urease, beta-subunit 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
CheC-like Surface presentation of antigens (SPOA) 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
ACT-like ACT-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PDZ domain-like ClpP/crotonase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
YrdC/RibB RibA-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Translation proteins Translation proteins 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Formyltransferase FMT C-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
RuvA domain 2-like BRCT domain 11
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 11
PIN domain-like DNA/RNA polymerases 11
HD-domain/PDEase-like Nucleotidyltransferase 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 11
HD-domain/PDEase-like TGS-like 11
GroES-like NAD(P)-binding Rossmann-fold domains 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Class II aaRS and biotin synthetases Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Pectin lyase-like Autotransporter 11
Translation proteins PRC-barrel domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
beta and beta-prime subunits of DNA dependent RNA-polymerase beta and beta-prime subunits of DNA dependent RNA-polymerase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
Aldolase UDP-Glycosyltransferase/glycogen phosphorylase 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Lysozyme-like LysM domain 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
CarD-like TRCF domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PHP14-like Phospholipase D/nuclease 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
ACT-like Formyltransferase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Chorismate mutase II Periplasmic binding protein-like II 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
GroEL equatorial domain-like GroEL apical domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
HisI-like all-alpha NTP pyrophosphatases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Translation proteins ThrRS/AlaRS common domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Chorismate mutase II ACT-like 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Fibronectin type III Fibronectin type III 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
S-adenosyl-L-methionine-dependent methyltransferases DNA methylase specificity domain 11
HCP-like TPR-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
PPK N-terminal domain-like PHP14-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
RNase III domain-like dsRNA-binding domain-like 11
FliG FliG 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
YjeF N-terminal domain-like Ribokinase-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Periplasmic binding protein-like II ACT-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Trypsin-like serine proteases PDZ domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
DNA clamp DNA clamp 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Barwin-like endoglucanases Sporulation related repeat 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
CheY-like Homeodomain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Macro domain-like Zn-dependent exopeptidases 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
FAD-linked oxidoreductase ALDH-like 11
PHP domain-like AF1531-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Nucleic acid-binding proteins GAD domain-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Actin-like ATPase domain HD-domain/PDEase-like 11
L,D-transpeptidase catalytic domain-like NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Zinc beta-ribbon DNA primase core 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
PreATP-grasp domain PreATP-grasp domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
AFP III-like domain UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L6 Ribosomal protein L6 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Nucleotidyltransferase TGS-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
HCP-like HCP-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Serine metabolism enzymes domain ACT-like 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Nucleotidylyl transferase tRNA-binding arm 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PIN domain-like Ribonuclease H-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Translation proteins "Winged helix" DNA-binding domain 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
L30e-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
DNA repair protein MutS, domain III SMR domain-like 11
PDZ domain-like PDZ domain-like 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
Ribokinase-like Nucleotidylyl transferase 11
Carbamate kinase-like ACT-like 11
CheY-like P-loop containing nucleoside triphosphate hydrolases 11
Ribbon-helix-helix ACT-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]