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Domain combination pairs in butyrate-producing bacterium SSC/2

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

525 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Actin-like ATPase domain Actin-like ATPase domain 166
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1610
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 155
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 157
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 152
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 112
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 111
CheY-like C-terminal effector domain of the bipartite response regulators 111
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 112
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 91
GroES-like NAD(P)-binding Rossmann-fold domains 92
PTS system IIB component-like Phoshotransferase/anion transport protein 85
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 74
PTS-regulatory domain, PRD PTS system IIB component-like 74
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 76
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 74
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 63
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 62
P-loop containing nucleoside triphosphate hydrolases Translation proteins 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 64
Homeodomain-like SIS domain 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 64
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 51
Glucose permease domain IIB Duplicated hybrid motif 52
Calcium ATPase, transduction domain A HAD-like 55
Homeodomain-like Homeodomain-like 53
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 41
ACT-like ACT-like 42
Alpha-L RNA-binding motif Pseudouridine synthase 41
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 42
HAD-like Calcium ATPase, transmembrane domain M 44
Phospholipase D/nuclease Phospholipase D/nuclease 43
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 41
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
PreATP-grasp domain Rudiment single hybrid motif 42
(Trans)glycosidases Glycosyl hydrolase domain 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
PurM N-terminal domain-like PurM C-terminal domain-like 42
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 42
Homodimeric domain of signal transducing histidine kinase CheY-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 31
Nucleotide-binding domain Nucleotide-binding domain 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
L30e-like alpha/beta knot 31
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
DNA methylase specificity domain DNA methylase specificity domain 31
NAD(P)-binding Rossmann-fold domains ACT-like 33
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 33
4Fe-4S ferredoxins Fe-only hydrogenase 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 33
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 33
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 32
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 31
Lysozyme-like Cysteine proteinases 31
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 33
alpha-helical ferredoxin Nucleotide-binding domain 32
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 32
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 32
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 31
HMA, heavy metal-associated domain HAD-like 33
Translation proteins EF-G C-terminal domain-like 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 32
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 32
4Fe-4S ferredoxins Radical SAM enzymes 31
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 32
Regulatory protein AraC Homeodomain-like 31
PYP-like sensor domain (PAS domain) Nucleotide cyclase 22
4Fe-4S ferredoxins DHS-like NAD/FAD-binding domain 21
Copper amine oxidase, domain N Zn-dependent exopeptidases 21
Class II aaRS and biotin synthetases GAD domain-like 21
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
PPK N-terminal domain-like Phospholipase D/nuclease 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Trypsin-like serine proteases PDZ domain-like 22
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 21
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 21
ParB/Sulfiredoxin KorB DNA-binding domain-like 22
Nucleic acid-binding proteins GAD domain-like 21
CheY-like CheY-like 22
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
Nucleotide cyclase EAL domain-like 22
PHP14-like Phospholipase D/nuclease 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 21
PYP-like sensor domain (PAS domain) CheY-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 22
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Serine metabolism enzymes domain ACT-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
PreATP-grasp domain Methylglyoxal synthase-like 21
PreATP-grasp domain PreATP-grasp domain 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
L domain-like Invasin/intimin cell-adhesion fragments 22
4Fe-4S ferredoxins Adenine nucleotide alpha hydrolases-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
S-adenosyl-L-methionine-dependent methyltransferases DNA methylase specificity domain 22
"Winged helix" DNA-binding domain PTS system IIB component-like 22
L domain-like Fibronectin type III 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
Thiolase-like Thiolase-like 21
"Winged helix" DNA-binding domain PLP-dependent transferases 21
PR-1-like Invasin/intimin cell-adhesion fragments 22
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
PLP-binding barrel Alanine racemase C-terminal domain-like 21
E set domains Glycosyl hydrolase domain 22
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Aldolase post-HMGL domain-like 22
"Winged helix" DNA-binding domain GAF domain-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 21
E set domains (Trans)glycosidases 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 21
PPK N-terminal domain-like PHP14-like 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
NEAT domain-like Fibronectin type III 22
Periplasmic binding protein-like II 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 21
Rubredoxin-like Ferritin-like 22
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
HprK N-terminal domain-like PEP carboxykinase-like 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Nucleotidyltransferase ACT-like 11
Rudiment single hybrid motif post-HMGL domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
PH0987 N-terminal domain-like Cyclophilin-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Chaperone J-domain TPR-like 11
Tetrahydrobiopterin biosynthesis enzymes-like 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
(Trans)glycosidases Fibronectin type III 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
Rudiment single hybrid motif Single hybrid motif 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Sensory domain-like Nucleotide cyclase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
post-AAA+ oligomerization domain-like OmpH-like 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
NTF2-like Penicillin binding protein dimerisation domain 11
lambda repressor-like DNA-binding domains PLP-dependent transferases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
PTS system fructose IIA component-like PTS IIb component 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
CBS-domain pair DHH phosphoesterases 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
DNA-binding domain DNA breaking-rejoining enzymes 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
PUA domain-like alpha/beta knot 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins PRC-barrel domain 11
PRTase-like PRTase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Sigma2 domain of RNA polymerase sigma factors C-terminal effector domain of the bipartite response regulators 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Tex N-terminal region-like RuvA domain 2-like 11
PK beta-barrel domain-like Molybdenum cofactor biosynthesis proteins 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
RuvA domain 2-like RuvA domain 2-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Clc chloride channel TrkA C-terminal domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
LysM domain LysM domain 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Invasin/intimin cell-adhesion fragments Cysteine proteinases 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
P-loop containing nucleoside triphosphate hydrolases Zinc beta-ribbon 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
MgtE N-terminal domain-like CBS-domain pair 11
DeoB insert domain-like Alkaline phosphatase-like 11
PYP-like sensor domain (PAS domain) DHH phosphoesterases 11
PreATP-grasp domain Single hybrid motif 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
SirA-like DsrEFH-like 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
HprK N-terminal domain-like DHH phosphoesterases 11
Radical SAM enzymes RuvA domain 2-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Phage tail proteins Cysteine proteinases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Putative DNA-binding domain Probable bacterial effector-binding domain 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
2Fe-2S ferredoxin-like Fe-only hydrogenase 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nqo1C-terminal domain-like Nucleotide-binding domain 11
DNA/RNA polymerases Trypsin-like serine proteases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases DNA ligase/mRNA capping enzyme, catalytic domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Glutathione synthetase ATP-binding domain-like HAD-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Tp47 lipoprotein, N-terminal domain Fibronectin type III 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
P-loop containing nucleoside triphosphate hydrolases TRAP-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Ribosomal protein L6 Ribosomal protein L6 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Tetrapyrrole methylase 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
DnaD domain-like DnaD domain-like 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Trigger factor ribosome-binding domain FKBP-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Chorismate mutase II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Rhodanese/Cell cycle control phosphatase Adenine nucleotide alpha hydrolases-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain HemD-like 11
L9 N-domain-like Ribonuclease H-like 11
DNA-glycosylase Nudix 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Class I glutamine amidotransferase-like Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Flavoproteins 4Fe-4S ferredoxins 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
L,D-transpeptidase pre-catalytic domain-like L,D-transpeptidase catalytic domain-like 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
ThrRS/AlaRS common domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
TGS-like Class II aaRS ABD-related 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Translation proteins Translation proteins 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
NEAT domain-like L domain-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Carbamate kinase-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Rudiment single hybrid motif Aldolase 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Ribonuclease H-like AF1531-like 11
PDZ domain-like ClpP/crotonase 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
Tp47 lipoprotein, N-terminal domain Tp47 lipoprotein, middle and C-terminal domains 11
Hsp33 domain HSP33 redox switch-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Periplasmic binding protein-like II HemD-like 11
PheT/TilS domain Putative DNA-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
MFS general substrate transporter P-loop containing nucleoside triphosphate hydrolases 11
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Tp47 lipoprotein, middle and C-terminal domains Fibronectin type III 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases OmpH-like 11
Smc hinge domain Tropomyosin 11
Homeodomain-like Ribonuclease H-like 11
Fibronectin type III Hedgehog/DD-peptidase 11
MFS general substrate transporter "Winged helix" DNA-binding domain 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
HD-domain/PDEase-like TGS-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
ParB/Sulfiredoxin PUA domain-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
TGS-like Class II aaRS and biotin synthetases 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Sortase Sortase 11
NTF2-like beta-lactamase/transpeptidase-like 11
Subtilisin-like Fibronectin type III 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Aldolase Single hybrid motif 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Formyltransferase FMT C-terminal domain-like 11
Tetrapyrrole methylase HemD-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
TGS-like ThrRS/AlaRS common domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
TrpR-like TrpR-like 11
Invasin/intimin cell-adhesion fragments Fibronectin type III 11
Invasin/intimin cell-adhesion fragments LmbE-like 11
post-HMGL domain-like Single hybrid motif 11
SNF-like SNF-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
RNase III domain-like dsRNA-binding domain-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
C-terminal domain of transcriptional repressors P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
TGS-like ACT-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PreATP-grasp domain Aldolase 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
CBS-domain pair MgtE membrane domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Ribonuclease H-like RuvA domain 2-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Protein kinase-like (PK-like) Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
NEAT domain-like NEAT domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
DNA clamp DNA clamp 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Tetrapyrrole methylase 11
Phosphotyrosine protein phosphatases I Ribose/Galactose isomerase RpiB/AlsB 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
MOP-like MOP-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
Nucleotide cyclase Nucleotide cyclase 11
DNA repair protein MutS, domain III SMR domain-like 11
Periplasmic binding protein-like II ACT-like 11
Subtilisin-like Invasin/intimin cell-adhesion fragments 11
AhpD-like RmlC-like cupins 11
UROD/MetE-like UROD/MetE-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
KorB DNA-binding domain-like PUA domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Sec-C motif Creatinase/aminopeptidase 11
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 11
RuvA domain 2-like Nucleic acid-binding proteins 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
YjeF N-terminal domain-like Ribokinase-like 11
HprK N-terminal domain-like CBS-domain pair 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Quinoprotein alcohol dehydrogenase-like YVTN repeat-like/Quinoprotein amine dehydrogenase 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
HD-domain/PDEase-like ACT-like 11
Zn-dependent exopeptidases Sporulation related repeat 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Nucleotidyltransferase TGS-like 11
Chorismate mutase II P-loop containing nucleoside triphosphate hydrolases 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
GIY-YIG endonuclease RuvA domain 2-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Nudix Nudix 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
PreATP-grasp domain post-HMGL domain-like 11
Invasin/intimin cell-adhesion fragments PLC-like phosphodiesterases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Rhodanese/Cell cycle control phosphatase Activating enzymes of the ubiquitin-like proteins 11
YjbR-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11

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