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Domain combination pairs in Cupriavidus necator N-1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

770 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 2102
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 685
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4421
"Winged helix" DNA-binding domain GAF domain-like 431
GroES-like NAD(P)-binding Rossmann-fold domains 382
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 343
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3415
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 333
CheY-like C-terminal effector domain of the bipartite response regulators 323
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 319
Thiolase-like Thiolase-like 311
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 305
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 297
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 297
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 286
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 273
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 272
Thioredoxin-like GST C-terminal domain-like 232
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 236
Homeodomain-like P-loop containing nucleoside triphosphate hydrolases 2211
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 214
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 214
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 204
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 203
Homeodomain-like Homeodomain-like 195
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 183
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 186
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 187
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 186
"Winged helix" DNA-binding domain PLP-dependent transferases 172
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 175
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 175
"Winged helix" DNA-binding domain Chorismate lyase-like 172
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 175
TPR-like P-loop containing nucleoside triphosphate hydrolases 178
Actin-like ATPase domain Actin-like ATPase domain 176
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 164
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 151
PreATP-grasp domain Rudiment single hybrid motif 155
ISP domain Bet v1-like 152
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 155
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 146
TPR-like TPR-like 149
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 144
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 136
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 131
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 135
P-loop containing nucleoside triphosphate hydrolases Translation proteins 127
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 123
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1210
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1211
Cytochrome c Cytochrome c 125
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1110
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 115
ClpP/crotonase ClpP/crotonase 113
TPR-like Nucleotide cyclase 105
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 105
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 104
PYP-like sensor domain (PAS domain) Nucleotide cyclase 107
cAMP-binding domain-like "Winged helix" DNA-binding domain 102
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 103
Homodimeric domain of signal transducing histidine kinase CheY-like 108
Aldolase post-HMGL domain-like 93
P-loop containing nucleoside triphosphate hydrolases MOP-like 91
PreATP-grasp domain Single hybrid motif 93
Enolase N-terminal domain-like Enolase C-terminal domain-like 91
C-terminal effector domain of the bipartite response regulators TPR-like 95
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 98
Nucleotide cyclase EAL domain-like 97
CheY-like Homeodomain-like 93
Glutathione synthetase ATP-binding domain-like Single hybrid motif 93
Rudiment single hybrid motif Single hybrid motif 93
CheY-like P-loop containing nucleoside triphosphate hydrolases 93
Class I glutamine amidotransferase-like Homeodomain-like 83
Phospholipase D/nuclease Phospholipase D/nuclease 85
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 85
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 72
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 72
HlyD-like secretion proteins HlyD-like secretion proteins 72
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 74
Molybdenum cofactor-binding domain CO dehydrogenase molybdoprotein N-domain-like 72
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 73
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 71
Homeodomain-like Ribonuclease H-like 74
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 61
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 62
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 63
Translation proteins EF-G C-terminal domain-like 63
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 63
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 61
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
Aconitase iron-sulfur domain LeuD/IlvD-like 63
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 62
ParB/Sulfiredoxin KorB DNA-binding domain-like 62
Homeodomain-like SIS domain 62
Lysozyme-like beta-lactamase/transpeptidase-like 64
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 53
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 53
EF-G C-terminal domain-like EF-G C-terminal domain-like 52
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 54
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 52
MetI-like MetI-like 52
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 52
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 52
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 52
HAD-like Calcium ATPase, transmembrane domain M 55
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 52
Triger factor/SurA peptide-binding domain-like FKBP-like 54
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 55
PurM N-terminal domain-like PurM C-terminal domain-like 52
Calcium ATPase, transduction domain A HAD-like 55
PYP-like sensor domain (PAS domain) EAL domain-like 54
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 53
Alpha-L RNA-binding motif Pseudouridine synthase 53
PYP-like sensor domain (PAS domain) CheY-like 55
GAF domain-like Homeodomain-like 53
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 53
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 52
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 43
Nqo1 middle domain-like Nqo1C-terminal domain-like 43
GAF domain-like Homodimeric domain of signal transducing histidine kinase 43
PK beta-barrel domain-like PK C-terminal domain-like 41
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
Formate dehydrogenase/DMSO reductase, domains 1-3 2Fe-2S ferredoxin-like 42
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
Oxidoreductase molybdopterin-binding domain E set domains 42
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 43
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 43
ADC-like 2Fe-2S ferredoxin-like 42
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 41
Trypsin-like serine proteases PDZ domain-like 43
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 43
ACT-like ACT-like 43
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 42
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 42
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 42
lambda repressor-like DNA-binding domains RmlC-like cupins 42
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
PreATP-grasp domain post-HMGL domain-like 31
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 31
PDZ domain-like PDZ domain-like 32
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 32
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Translation proteins Ribosomal protein S5 domain 2-like 31
Single hybrid motif CoA-dependent acyltransferases 32
4Fe-4S ferredoxins Riboflavin synthase domain-like 31
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 31
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
2Fe-2S ferredoxin-like alpha-helical ferredoxin 31
4Fe-4S ferredoxins ADC-like 31
RmlC-like cupins Homeodomain-like 31
GAF domain-like PYP-like sensor domain (PAS domain) 32
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
HMA, heavy metal-associated domain HAD-like 33
PreATP-grasp domain Aldolase 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Histidine-containing phosphotransfer domain, HPT domain CheY-like 33
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 31
Nucleotidyltransferase ACT-like 33
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 31
HD-domain/PDEase-like ACT-like 33
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 32
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 31
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 31
E set domains (Trans)glycosidases 33
GroES-like GroES-like 31
Rudiment single hybrid motif post-HMGL domain-like 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Aldolase Single hybrid motif 31
CheW-like CheY-like 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
HD-domain/PDEase-like Nucleotidyltransferase 33
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
Nucleotide-diphospho-sugar transferases PilZ domain-like 32
PYP-like sensor domain (PAS domain) Homeodomain-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 33
(Trans)glycosidases Glycosyl hydrolase domain 33
Rudiment single hybrid motif Aldolase 31
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 32
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 31
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 33
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
post-HMGL domain-like Single hybrid motif 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
Glutathione synthetase ATP-binding domain-like Aldolase 31
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 31
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Cytochrome P450 Riboflavin synthase domain-like 22
ACT-like Formyltransferase 21
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Ribonuclease H-like DNA/RNA polymerases 22
Cupredoxins Cytochrome c 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
CheY-like Nucleotide cyclase 21
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Thioredoxin-like Nqo1 FMN-binding domain-like 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 21
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Protein kinase-like (PK-like) GAF domain-like 21
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 21
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 21
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 21
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 21
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 22
P-loop containing nucleoside triphosphate hydrolases TGS-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
Flavoproteins Riboflavin synthase domain-like 22
PPK N-terminal domain-like PHP14-like 22
Globin-like Riboflavin synthase domain-like 21
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 21
PHP14-like Phospholipase D/nuclease 22
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
Galactose mutarotase-like E set domains 21
Single hybrid motif ClpP/crotonase 21
YrdC/RibB RibA-like 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Translation proteins ThrRS/AlaRS common domain 22
L30e-like alpha/beta knot 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Nucleotidyltransferase TGS-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 21
TGS-like ACT-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
PH0987 N-terminal domain-like Cyclophilin-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
PreATP-grasp domain ClpP/crotonase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
PPK N-terminal domain-like Phospholipase D/nuclease 22
PrpR receptor domain-like Homeodomain-like 21
Rudiment single hybrid motif ClpP/crotonase 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
Thioredoxin-like Nqo1 middle domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Quinoprotein alcohol dehydrogenase-like Cytochrome c 22
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase NM domain-like 21
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
CheY-like Methylesterase CheB, C-terminal domain 21
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 21
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Thioredoxin-like Nqo1C-terminal domain-like 22
Protein kinase-like (PK-like) PYP-like sensor domain (PAS domain) 21
E set domains Glycosyl hydrolase domain 22
HD-domain/PDEase-like TGS-like 22
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 21
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
C-terminal effector domain of the bipartite response regulators Nucleotide cyclase 22
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 22
Formyltransferase FMT C-terminal domain-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
DinB/YfiT-like putative metalloenzymes C-type lectin-like 21
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 21
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 21
Regulatory protein AraC Homeodomain-like 21
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Clc chloride channel CBS-domain pair 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
HD-domain/PDEase-like "Winged helix" DNA-binding domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
GAF domain-like EAL domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
CheC-like Surface presentation of antigens (SPOA) 11
Pili subunits GspK insert domain-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Phage tail proteins Phage tail proteins 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Carbamate kinase-like ACT-like 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PLP-dependent transferases PLP-dependent transferases 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Cadherin-like Cadherin-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
alpha/beta-Hydrolases C-terminal effector domain of the bipartite response regulators 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
PYP-like sensor domain (PAS domain) Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
cAMP-binding domain-like cAMP-binding domain-like 11
Fumarate reductase respiratory complex transmembrane subunits 2Fe-2S ferredoxin-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Galactose mutarotase-like Galactose mutarotase-like 11
alpha/beta-Hydrolases NTF2-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
ADC-like Riboflavin synthase domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Kelch motif Galactose oxidase, central domain 11
Nucleic acid-binding proteins GAD domain-like 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
Translation proteins PRC-barrel domain 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
beta-Roll beta-Roll 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Cytochrome P450 Flavoproteins 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
PIN domain-like DNA/RNA polymerases 11
Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 11
Chorismate mutase II ACT-like 11
FAD/NAD(P)-binding domain Thioredoxin-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Homeodomain-like Acetamidase/Formamidase-like 11
TGS-like Class II aaRS and biotin synthetases 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Cadherin-like Galactose oxidase, central domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
4Fe-4S ferredoxins Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 11
Bet v1-like PEBP-like 11
Ribbon-helix-helix ALDH-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
GroEL equatorial domain-like GroEL apical domain-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
2Fe-2S ferredoxin-like Bet v1-like 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
FliG FliG 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
AhpD-like AhpD-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
lambda repressor-like DNA-binding domains PYP-like sensor domain (PAS domain) 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Homeodomain-like TPR-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
RmlC-like cupins RmlC-like cupins 11
P-loop containing nucleoside triphosphate hydrolases Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
EAL domain-like CBS-domain pair 11
Dihydropteroate synthetase-like Methionine synthase domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PreATP-grasp domain PreATP-grasp domain 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
RNase III domain-like dsRNA-binding domain-like 11
TGS-like Class II aaRS ABD-related 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Tex N-terminal region-like Ribonuclease H-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
Pili subunits Pili subunits 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
DNA-glycosylase Nudix 11
Thioredoxin-like Six-hairpin glycosidases 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Single hybrid motif FAD/NAD(P)-binding domain 11
alpha/beta-Hydrolases FMN-binding split barrel 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
GroEL-intermediate domain like GroEL apical domain-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide cyclase SMAD/FHA domain 11
Single hybrid motif Single hybrid motif 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
MOP-like MOP-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
FAD-linked oxidoreductase ALDH-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Hsp33 domain HSP33 redox switch-like 11
Nudix S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
TATA-box binding protein-like DNA-glycosylase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
YajQ-like YajQ-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
PheT/TilS domain Putative DNA-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Carbamate kinase-like PUA domain-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Nudix Metallo-hydrolase/oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
LysM domain Duplicated hybrid motif 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
alpha-helical ferredoxin Nucleotide-binding domain 11
ISP domain FAD/NAD(P)-binding domain 11
Alkaline phosphatase-like Concanavalin A-like lectins/glucanases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
P-loop containing nucleoside triphosphate hydrolases WGR domain-like 11
E set domains E set domains 11
Cyclophilin-like Cyclophilin-like 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
cAMP-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
PurS-like PurM C-terminal domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 11
"Winged helix" DNA-binding domain MOP-like 11
Molybdenum cofactor-binding domain Cytochrome c 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
TGS-like ThrRS/AlaRS common domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Nqo5-like HydB/Nqo4-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Translation proteins Translation proteins 11
CarD-like TRCF domain-like 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
HAMP domain-like GAF domain-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Chorismate mutase II Periplasmic binding protein-like II 11
ACP-like Acetyl-CoA synthetase-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Translation proteins "Winged helix" DNA-binding domain 11
ParB/Sulfiredoxin H-NS histone-like proteins 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
cAMP-binding domain-like ABC transporter transmembrane region 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Pseudouridine synthase PUA domain-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Tex N-terminal region-like RuvA domain 2-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
FAD-linked reductases, C-terminal domain Folate-binding domain 11
Nucleic acid-binding proteins PheT/TilS domain 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
Cupredoxins Cupredoxins 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
(Trans)glycosidases (Trans)glycosidases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Nucleic acid-binding proteins BRCT domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Lysozyme-like LysM domain 11
FKBP-like FKBP-like 11
TPR-like FMN-dependent nitroreductase-like 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
YjeF N-terminal domain-like Ribokinase-like 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
ALDH-like ALDH-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PDZ domain-like ClpP/crotonase 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Phase 1 flagellin Phase 1 flagellin 11
Putative DNA-binding domain Translation proteins 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Periplasmic binding protein-like II ACT-like 11
SMAD/FHA domain SMAD/FHA domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
Ribonuclease H-like Nucleic acid-binding proteins 11
DNA breaking-rejoining enzymes Homeodomain-like 11
PRTase-like alpha/beta-Hydrolases 11
PurS-like Class I glutamine amidotransferase-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
RuvA domain 2-like RuvA domain 2-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
CheY-binding domain of CheA CheW-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
KorB DNA-binding domain-like H-NS histone-like proteins 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Ribonuclease H-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Zinc beta-ribbon DNA primase core 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
RuvA domain 2-like BRCT domain 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
DNA clamp DNA clamp 11
CheY-like CheY-like 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Cadherin-like Kelch motif 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases FAD/NAD(P)-binding domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
TTHA1013/TTHA0281-like lambda repressor-like DNA-binding domains 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like HD-domain/PDEase-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
PurS-like FGAM synthase PurL, linker domain 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Nucleotidyltransferase Nucleotidyltransferase 11
"Winged helix" DNA-binding domain Rhodanese/Cell cycle control phosphatase 11
CBS-domain pair Nucleotide cyclase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
Ribonuclease H-like GIY-YIG endonuclease 11
Actin-like ATPase domain HD-domain/PDEase-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Homeodomain-like TATA-box binding protein-like 11
Homeodomain-like C-terminal effector domain of the bipartite response regulators 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Thioredoxin-like TPR-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Pyrimidine nucleoside phosphorylase C-terminal domain 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Class II aaRS and biotin synthetases Translation proteins 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
PurS-like PurM N-terminal domain-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
Single hybrid motif alpha/beta-Hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Homeodomain-like DNA-glycosylase 11
ClpP/crotonase NfeD domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Bacterial muramidases Lysozyme-like 11
Acetyl-CoA synthetase-like Glycerol-3-phosphate (1)-acyltransferase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
alpha/beta-Hydrolases AhpD-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Fumarate reductase respiratory complex transmembrane subunits Nucleotide cyclase 11
Periplasmic binding protein-like II MetI-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
PIN domain-like Ribonuclease H-like 11
UROD/MetE-like UROD/MetE-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Sensory domain-like HAMP domain-like 11
Sialidases Sialidases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
PUA domain-like alpha/beta knot 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Class I glutamine amidotransferase-like Class I glutamine amidotransferase-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Periplasmic binding protein-like II Lysozyme-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
GAF domain-like Nucleotide cyclase 11
2Fe-2S ferredoxin-like Nucleotide cyclase 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11

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