SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Domain combination pairs in Hyphopichia burtonii NRRL Y-1933 v1.0

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

936 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 6632
Actin-like ATPase domain Actin-like ATPase domain 2810
GroES-like NAD(P)-binding Rossmann-fold domains 242
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 178
RNA-binding domain, RBD RNA-binding domain, RBD 1611
HAD-like Calcium ATPase, transmembrane domain M 158
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 147
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 147
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 147
TPR-like TPR-like 1411
ARM repeat ARM repeat 1311
P-loop containing nucleoside triphosphate hydrolases Translation proteins 1310
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 134
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 126
ABC transporter transmembrane region ABC transporter transmembrane region 125
Calcium ATPase, transduction domain A HAD-like 126
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 115
GroEL equatorial domain-like GroEL-intermediate domain like 102
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 103
Ypt/Rab-GAP domain of gyp1p Ypt/Rab-GAP domain of gyp1p 105
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 94
Homeodomain-like Homeodomain-like 96
GroEL equatorial domain-like GroEL apical domain-like 91
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 94
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 96
WD40 repeat-like WD40 repeat-like 97
GroEL-intermediate domain like GroEL apical domain-like 91
ARM repeat Protein kinase-like (PK-like) 99
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 83
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 88
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 83
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 85
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 85
Cyclin-like Cyclin-like 84
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 75
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 73
Thioredoxin-like GST C-terminal domain-like 73
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 72
EF-G C-terminal domain-like EF-G C-terminal domain-like 66
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 62
Chaperone J-domain HSP40/DnaJ peptide-binding domain 65
Class II aaRS and biotin synthetases Class II aaRS ABD-related 66
CRAL/TRIO N-terminal domain CRAL/TRIO domain 65
Translation proteins EF-G C-terminal domain-like 66
L domain-like L domain-like 66
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 66
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 63
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 64
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 66
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 63
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 66
beta-sandwich domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 52
PreATP-grasp domain Rudiment single hybrid motif 55
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 53
Ribonuclease H-like DNA/RNA polymerases 53
Helical domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 52
vWA-like C-terminal, gelsolin-like domain of Sec23/24 52
Nucleic acid-binding proteins Translation proteins SH3-like domain 53
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 52
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 52
SNARE-like Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 53
Zn-finger domain of Sec23/24 vWA-like 52
beta-sandwich domain of Sec23/24 Helical domain of Sec23/24 52
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 54
Thiolase-like Thiolase-like 52
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 52
BAR/IMD domain-like SH3-domain 54
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 54
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 54
Thioredoxin-like Thioredoxin-like 54
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 54
Zn-finger domain of Sec23/24 Helical domain of Sec23/24 52
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 55
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 52
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 53
PA domain Zn-dependent exopeptidases 54
Quinoprotein alcohol dehydrogenase-like WD40 repeat-like 53
Zn-finger domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 52
beta-sandwich domain of Sec23/24 Zn-finger domain of Sec23/24 52
vWA-like Helical domain of Sec23/24 52
beta-sandwich domain of Sec23/24 vWA-like 52
(Trans)glycosidases Glycosyl hydrolase domain 53
SH3-domain SH3-domain 44
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
Rudiment single hybrid motif Single hybrid motif 44
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
ARM repeat P-loop containing nucleoside triphosphate hydrolases 44
Aconitase iron-sulfur domain LeuD/IlvD-like 41
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 42
F-box domain RNI-like 44
Translation proteins Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases TGS-like 41
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 44
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 43
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 44
Glutathione synthetase ATP-binding domain-like Single hybrid motif 44
Cullin homology domain "Winged helix" DNA-binding domain 43
MFS general substrate transporter MFS general substrate transporter 43
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 42
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 41
UBA-like Ubiquitin-like 44
RING/U-box P-loop containing nucleoside triphosphate hydrolases 43
Bromodomain Bromodomain 33
ENTH/VHS domain GAT-like domain 33
cAMP-binding domain-like cAMP-binding domain-like 33
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 33
Cullin repeat-like "Winged helix" DNA-binding domain 32
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 32
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 33
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 33
Galactose-binding domain-like (Trans)glycosidases 32
SMAD/FHA domain Protein kinase-like (PK-like) 32
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 33
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 32
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 32
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 32
F-box domain WD40 repeat-like 32
ADC-like P-loop containing nucleoside triphosphate hydrolases 33
Aminoacid dehydrogenase-like, N-terminal domain P-loop containing nucleoside triphosphate hydrolases 32
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 31
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
C2 domain (Calcium/lipid-binding domain, CaLB) C2 domain (Calcium/lipid-binding domain, CaLB) 33
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 32
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 32
C2 domain (Calcium/lipid-binding domain, CaLB) Protein kinase-like (PK-like) 33
ADC-like Cdc48 domain 2-like 33
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 31
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 32
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 33
Sec63 N-terminal domain-like E set domains 33
ARM repeat Clathrin adaptor appendage domain 33
FYVE/PHD zinc finger FYVE/PHD zinc finger 32
CBS-domain pair CBS-domain pair 33
Aldolase post-HMGL domain-like 32
alpha-ketoacid dehydrogenase kinase, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
DNA-binding domain of Mlu1-box binding protein MBP1 Ankyrin repeat 32
FYVE/PHD zinc finger Clavaminate synthase-like 33
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
RNase III domain-like dsRNA-binding domain-like 33
PriA/YqbF domain GINS helical bundle-like 32
P-loop containing nucleoside triphosphate hydrolases Bromodomain 33
SH3-domain PX domain 33
Cupredoxins Cupredoxins 33
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 33
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 33
ARM repeat WD40 repeat-like 33
EF-hand EF-hand 33
PreATP-grasp domain Single hybrid motif 33
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 33
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 32
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
RING/U-box Cysteine proteinases 33
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 32
Protein kinase-like (PK-like) KA1-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 33
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 33
(Trans)glycosidases Galactose mutarotase-like 32
P-loop containing nucleoside triphosphate hydrolases Phosphoglycerate mutase-like 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 33
Homodimeric domain of signal transducing histidine kinase CheY-like 33
ACT-like ACT-like 33
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 31
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 33
Protease propeptides/inhibitors Subtilisin-like 32
Cullin repeat-like Cullin homology domain 32
RING/U-box RING/U-box 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
BAR/IMD domain-like GTPase activation domain, GAP 33
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 22
DBL homology domain (DH-domain) PH domain-like 22
HAND domain of the nucleosome remodeling ATPase ISWI Homeodomain-like 21
EF-hand Mitochondrial carrier 22
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 21
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 22
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 22
Clathrin adaptor appendage domain Subdomain of clathrin and coatomer appendage domain 22
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 22
WW domain FKBP-like 21
DPP6 N-terminal domain-like alpha/beta-Hydrolases 21
Class I glutamine amidotransferase-like Ribulose-phoshate binding barrel 22
E set domains AMPKBI-like 21
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 22
dsRNA-binding domain-like dsRNA-binding domain-like 22
Galactose mutarotase-like Glycosyl hydrolase domain 21
Metalloproteases ("zincins"), catalytic domain ARM repeat 22
CCCH zinc finger RNA-binding domain, RBD 22
Sec63 N-terminal domain-like Sec63 N-terminal domain-like 22
PreATP-grasp domain Methylglyoxal synthase-like 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases E set domains 22
Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 21
Flavoproteins Riboflavin synthase domain-like 22
Cyclophilin-like Cyclophilin-like 22
ARM repeat Subdomain of clathrin and coatomer appendage domain 22
SNARE-like SNARE fusion complex 21
ARID-like Clavaminate synthase-like 22
Amine oxidase N-terminal region Amine oxidase catalytic domain 22
PH domain-like Oxysterol-binding protein-like 22
DAK1/DegV-like DhaL-like 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 22
vWA-like SPOC domain-like 21
HMA, heavy metal-associated domain HAD-like 22
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 22
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 22
Acyl-CoA dehydrogenase C-terminal domain-like Acyl-CoA dehydrogenase C-terminal domain-like 21
Translation proteins Initiation factor IF2/eIF5b, domain 3 22
Nucleotidylyl transferase Ribosomal protein L25-like 22
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 22
PRTase-like PRTase-like 22
BRCT domain BRCT domain 22
RING/U-box RNA-binding domain, RBD 22
BAR/IMD domain-like PH domain-like 22
WD40 repeat-like Protein kinase-like (PK-like) 22
t-snare proteins SNARE fusion complex 21
Zn2/Cys6 DNA-binding domain Zn2/Cys6 DNA-binding domain 22
Sec7 domain ARM repeat 22
TPR-like "Winged helix" DNA-binding domain 21
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 22
CCCH zinc finger CCCH zinc finger 22
Ribosomal protein L6 Ribosomal protein L6 22
PH domain-like GTPase activation domain, GAP 22
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 22
Thioredoxin-like Ubiquitin-like 22
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 22
Ankyrin repeat POZ domain 22
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 21
ARID-like FYVE/PHD zinc finger 22
PH domain-like PH domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 21
Restriction endonuclease-like RuvA domain 2-like 21
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 21
P-loop containing nucleoside triphosphate hydrolases HAND domain of the nucleosome remodeling ATPase ISWI 21
Clc chloride channel CBS-domain pair 21
alpha/beta-Hydrolases (Phosphotyrosine protein) phosphatases II 22
Single hybrid motif CoA-dependent acyltransferases 22
Zn-dependent exopeptidases Transferrin receptor-like dimerisation domain 22
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 22
PurM N-terminal domain-like PurM C-terminal domain-like 22
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Smc hinge domain Tropomyosin 21
Translational machinery components L30e-like 22
POZ domain POZ domain 22
"Winged helix" DNA-binding domain E set domains 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Rudiment single hybrid motif Cyclophilin-like 22
Translation proteins ThrRS/AlaRS common domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Transducin (alpha subunit), insertion domain P-loop containing nucleoside triphosphate hydrolases 21
POZ domain Skp1 dimerisation domain-like 21
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 22
Nucleic acid-binding proteins Eukaryotic type KH-domain (KH-domain type I) 22
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 21
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
FYVE/PHD zinc finger RING/U-box 22
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 21
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 22
ARM repeat Formin homology 2 domain (FH2 domain) 21
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
SH3-domain Ras GEF 22
Rhodanese/Cell cycle control phosphatase (Phosphotyrosine protein) phosphatases II 22
Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), beta-barrel domain 22
Cyclophilin-like Single hybrid motif 22
tRNA-binding arm Class II aaRS and biotin synthetases 22
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 22
SMAD/FHA domain "Winged helix" DNA-binding domain 22
Cytochrome b5-like heme/steroid binding domain FMN-linked oxidoreductases 22
Cyclophilin-like TPR-like 21
PA domain Transferrin receptor-like dimerisation domain 22
Voltage-gated potassium channels Voltage-gated potassium channels 22
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 22
WW domain WW domain 22
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 22
Zinc beta-ribbon Cyclin-like 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 22
Phosphofructokinase Phosphofructokinase 22
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 22
Ankyrin repeat PLC-like phosphodiesterases 21
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PreATP-grasp domain post-HMGL domain-like 11
Rhodanese/Cell cycle control phosphatase Cysteine proteinases 11
Concanavalin A-like lectins/glucanases PH domain-like 11
Metallo-hydrolase/oxidoreductase Metallo-hydrolase/oxidoreductase 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleic acid-binding proteins BRCT domain 11
Glutathione synthetase ATP-binding domain-like PurM C-terminal domain-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain CheY-like 11
PX domain SNARE fusion complex 11
PLP-dependent transferases PLP-dependent transferases 11
FYVE/PHD zinc finger Rabenosyn-5 Rab-binding domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) Flavoproteins 11
EPT/RTPC-like P-loop containing nucleoside triphosphate hydrolases 11
Pentapeptide repeat-like beta-beta-alpha zinc fingers 11
Leukotriene A4 hydrolase N-terminal domain ARM repeat 11
MIT domain P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 11
EF-hand Tropomyosin 11
Alpha subunit of glutamate synthase, C-terminal domain alpha-helical ferredoxin 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
beta-sandwich domain of Sec23/24 Protein kinase-like (PK-like) 11
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 11
Cysteine-rich domain Protein kinase-like (PK-like) 11
Calponin-homology domain, CH-domain GTPase activation domain, GAP 11
Ribosomal L27 protein-like Eukaryotic type KH-domain (KH-domain type I) 11
UBC-like P-loop containing nucleoside triphosphate hydrolases 11
Flavoproteins Radical SAM enzymes 11
ENTH/VHS domain I/LWEQ domain 11
GINS helical bundle-like MurD-like peptide ligases, catalytic domain 11
GST C-terminal domain-like Ribosomal protein L25-like 11
TPR-like RING/U-box 11
Concanavalin A-like lectins/glucanases BEACH domain 11
RuvA domain 2-like SH2 domain 11
HAD-like BRCT domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Ubiquitin-like Cysteine proteinases 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 11
PH domain-like CAD & PB1 domains 11
SAM/Pointed domain Protein kinase-like (PK-like) 11
RuvA domain 2-like RuvA domain 2-like 11
N-terminal domain of adenylylcyclase associated protein, CAP C-terminal domain of adenylylcyclase associated protein 11
Chromo domain-like P-loop containing nucleoside triphosphate hydrolases 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Homeodomain-like MurD-like peptide ligases, catalytic domain 11
FabD/lysophospholipase-like 4'-phosphopantetheinyl transferase 11
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment DNA breaking-rejoining enzymes 11
UBC-like UBA-like 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 WW domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
RING/U-box TRAF domain-like 11
C2 domain (Calcium/lipid-binding domain, CaLB) Hect, E3 ligase catalytic domain 11
RNA-binding domain, RBD P-loop containing nucleoside triphosphate hydrolases 11
WD40 repeat-like Cysteine proteinases 11
Supernatant protein factor (SPF), C-terminal domain Oxysterol-binding protein-like 11
L9 N-domain-like Ribonuclease H-like 11
Acetyl-CoA synthetase-like ACP-like 11
HIT/MYND zinc finger-like SET domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Metallo-dependent phosphatases Zn-binding ribosomal proteins 11
ArfGap/RecO-like zinc finger UBA-like 11
Polo-box domain Polo-box domain 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
Glutathione synthetase ATP-binding domain-like Phosphoglycerate mutase-like 11
Terpenoid synthases Terpenoid synthases 11
cAMP-binding domain-like F-box domain 11
Glutathione synthetase ATP-binding domain-like PurM N-terminal domain-like 11
Dom34/Pelota N-terminal domain-like L30e-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PLP-dependent transferases EF-G C-terminal domain-like 11
Protease propeptides/inhibitors Families 57/38 glycoside transferase middle domain 11
Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain WD40 repeat-like 11
Rudiment single hybrid motif Aldolase 11
"Winged helix" DNA-binding domain HRDC-like 11
Thioredoxin-like ERP29 C domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
TATA-box binding protein-like TATA-box binding protein-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
TGS-like Class II aaRS and biotin synthetases 11
Acyl-CoA N-acyltransferases (Nat) Bromodomain 11
VPS9 domain UBA-like 11
P-loop containing nucleoside triphosphate hydrolases SH3-domain 11
PH domain-like WD40 repeat-like 11
Dehydroquinate synthase-like Aminoacid dehydrogenase-like, N-terminal domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Chaperone J-domain CSL zinc finger 11
P-loop containing nucleoside triphosphate hydrolases CheY-like 11
Histone-fold ARM repeat 11
Tex N-terminal region-like SH2 domain 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ISP domain Bet v1-like 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
TPR-like RNI-like 11
WD40 repeat-like Cyclophilin-like 11
SH3-domain PH domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
FAD/NAD(P)-binding domain NAD(P)-binding Rossmann-fold domains 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Ribonuclease H-like HRDC-like 11
PreATP-grasp domain PurM C-terminal domain-like 11
Quinoprotein alcohol dehydrogenase-like Protein kinase-like (PK-like) 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
RING/U-box R3H domain 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Cytochrome b5-like heme/steroid binding domain 11
HIT-like HIT-like 11
PreATP-grasp domain ClpP/crotonase 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Cell cycle regulatory proteins Protein kinase-like (PK-like) 11
Periplasmic binding protein-like II GlnB-like 11
post-HMGL domain-like Single hybrid motif 11
NTF2-like UBA-like 11
TATA-box binding protein-like DNA-glycosylase 11
FF domain FF domain 11
C2 domain (Calcium/lipid-binding domain, CaLB) Cysteine-rich domain 11
Nucleic acid-binding proteins Metallo-dependent phosphatases 11
ARM repeat Hypothetical protein YjiA, C-terminal domain 11
ARM repeat Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Glucocorticoid receptor-like (DNA-binding domain) GTPase activation domain, GAP 11
TPR-like Protein kinase-like (PK-like) 11
Aldolase NAD(P)-binding Rossmann-fold domains 11
UBC-like Class II aaRS and biotin synthetases 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
RNA-binding domain, RBD DPP6 N-terminal domain-like 11
mRNA decapping enzyme DcpS N-terminal domain HIT-like 11
Ran binding protein zinc finger-like Ran binding protein zinc finger-like 11
Homing endonucleases Cytochrome c oxidase subunit I-like 11
Activator of Hsp90 ATPase, Aha1 Bet v1-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DBL homology domain (DH-domain) CAD & PB1 domains 11
TPR-like Chaperone J-domain 11
SAM/Pointed domain PH domain-like 11
SH3-domain SAM/Pointed domain 11
Tropomyosin UBA-like 11
PYP-like sensor domain (PAS domain) Protein kinase-like (PK-like) 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Inosine monophosphate dehydrogenase (IMPDH) Thioesterase/thiol ester dehydrase-isomerase 11
SET domain WW domain 11
PDZ domain-like PDZ domain-like 11
UBA-like Thioredoxin-like 11
PH domain-like ArfGap/RecO-like zinc finger 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
Pseudouridine synthase Cytidine deaminase-like 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Riboflavin synthase domain-like 11
Homeodomain-like GINS helical bundle-like 11
Kelch motif POZ domain 11
P-loop containing nucleoside triphosphate hydrolases Aldolase 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) alpha-helical ferredoxin 11
PX domain CAD & PB1 domains 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
(Trans)glycosidases Anthrax protective antigen 11
ENTH/VHS domain RNA-binding domain, RBD 11
HAMP domain-like CheY-like 11
Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins 11
Eukaryotic type KH-domain (KH-domain type I) Retrovirus zinc finger-like domains 11
WD40 repeat-like Bacterial exopeptidase dimerisation domain 11
E set domains Ankyrin repeat 11
(Trans)glycosidases Six-hairpin glycosidases 11
WW domain FF domain 11
FYVE/PHD zinc finger GroEL apical domain-like 11
PP2C-like Nucleotide cyclase 11
TRAF domain-like Cysteine proteinases 11
PreATP-grasp domain Aspartate/ornithine carbamoyltransferase 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
UBA-like TPR-like 11
Aldolase Aminoacid dehydrogenase-like, N-terminal domain 11
FabD/lysophospholipase-like Thioesterase/thiol ester dehydrase-isomerase 11
WD40 repeat-like Calcium-dependent phosphotriesterase 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
TGS-like Class II aaRS ABD-related 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
(Phosphotyrosine protein) phosphatases II (Phosphotyrosine protein) phosphatases II 11
BSD domain-like BSD domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PH domain-like EF-hand 11
beta-sandwich domain of Sec23/24 ARM repeat 11
P-loop containing nucleoside triphosphate hydrolases EF-hand 11
ClpP/crotonase ClpP/crotonase 11
Zn2/Cys6 DNA-binding domain Formin homology 2 domain (FH2 domain) 11
DUSP-like Cysteine proteinases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
CHY zinc finger-like RING/U-box 11
Inhibitor of apoptosis (IAP) repeat Inhibitor of apoptosis (IAP) repeat 11
Class I glutamine amidotransferase-like Class II aaRS and biotin synthetases 11
GroES-like GroES-like 11
"Winged helix" DNA-binding domain CheY-like 11
Staphylococcal nuclease Staphylococcal nuclease 11
Acid proteases HMA, heavy metal-associated domain 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Hypothetical protein c14orf129, hspc210 TPR-like 11
Chaperone J-domain RNA-binding domain, RBD 11
SMI1/KNR4-like SMI1/KNR4-like 11
PreATP-grasp domain Metallo-dependent hydrolases 11
Cyclophilin-like PH0987 N-terminal domain-like 11
FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) Protein kinase-like (PK-like) 11
Cytochrome c Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
FAS1 domain FAS1 domain 11
Calponin-homology domain, CH-domain RGC domain-like 11
BRCT domain Lesion bypass DNA polymerase (Y-family), little finger domain 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
"Winged helix" DNA-binding domain GTPase activation domain, GAP 11
UBC-like Protein kinase-like (PK-like) 11
MFS general substrate transporter Clavaminate synthase-like 11
6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK Dihydropteroate synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
WD40 repeat-like HR1 repeat 11
Tudor/PWWP/MBT Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 11
ARM repeat Hect, E3 ligase catalytic domain 11
FAD/NAD(P)-binding domain Cytochrome b5-like heme/steroid binding domain 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic RPB5 N-terminal domain RPB5-like RNA polymerase subunit 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Ras GEF Ras GEF 11
Rudiment single hybrid motif N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 11
SH3-domain CAD & PB1 domains 11
PH0987 N-terminal domain-like Single hybrid motif 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
WW domain Hect, E3 ligase catalytic domain 11
PH domain-like BEACH domain 11
Ribonuclease H-like RNA-binding domain, RBD 11
BRCT domain post-AAA+ oligomerization domain-like 11
ENTH/VHS domain FYVE/PHD zinc finger 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Zinc beta-ribbon Zinc beta-ribbon 11
Zinc-binding domain of translation initiation factor 2 beta ARM repeat 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
FYVE/PHD zinc finger SAICAR synthase-like 11
Indigoidine synthase A-like Ribokinase-like 11
PLP-dependent transferases Translation proteins 11
ENTH/VHS domain Clathrin adaptor appendage domain 11
Actin depolymerizing proteins SH3-domain 11
Pseudouridine synthase PUA domain-like 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
Ypt/Rab-GAP domain of gyp1p EF-hand 11
(Trans)glycosidases Chitinase insertion domain 11
HR1 repeat Protein kinase-like (PK-like) 11
Trypsin-like serine proteases PDZ domain-like 11
Calpain large subunit, middle domain (domain III) Calpain large subunit, middle domain (domain III) 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
ISP transmembrane anchor ISP domain 11
Ribosomal proteins L15p and L18e "Winged helix" DNA-binding domain 11
PH domain-like BSD domain-like 11
Dehydroquinate synthase-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Aldolase 11
TPR-like HSP20-like chaperones 11
GTPase activation domain, GAP RGC domain-like 11
PIN domain-like Nucleic acid-binding proteins 11
FMN-linked oxidoreductases alpha-helical ferredoxin 11
Putative DNA-binding domain Putative DNA-binding domain 11
Alpha subunit of glutamate synthase, C-terminal domain Nucleotide-binding domain 11
HCP-like HCP-like 11
TGS-like ThrRS/AlaRS common domain 11
SET domain SET domain 11
ARM repeat FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
PreATP-grasp domain Cyclophilin-like 11
CHY zinc finger-like Zinc hairpin stack 11
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 11
Galactose-binding domain-like Galactose-binding domain-like 11
Ribosomal L27 protein-like ENTH/VHS domain 11
SET domain Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 11
Galactose-binding domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
PH domain-like Ypt/Rab-GAP domain of gyp1p 11
DNA clamp DNA clamp 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase Hedgehog/intein (Hint) domain 11
Homing endonucleases C-terminal domain of alpha and beta subunits of F1 ATP synthase 11
Thiamin phosphate synthase Ribokinase-like 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Elongation factor TFIIS domain 2 11
Thiamin diphosphate-binding fold (THDP-binding) Nitrite/Sulfite reductase N-terminal domain-like 11
Single hybrid motif ClpP/crotonase 11
Amidase signature (AS) enzymes PreATP-grasp domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Flavoproteins Nitrite/Sulfite reductase N-terminal domain-like 11
Glycolipid transfer protein, GLTP Nucleotide-diphospho-sugar transferases 11
Tetrahydrobiopterin biosynthesis enzymes-like Dihydropteroate synthetase-like 11
CBS-domain pair CAD & PB1 domains 11
Methylglyoxal synthase-like Aspartate/ornithine carbamoyltransferase 11
Nucleotide-diphospho-sugar transferases Calcium ATPase, transmembrane domain M 11
PLP-dependent transferases P-loop containing nucleoside triphosphate hydrolases 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
RING/U-box WD40 repeat-like 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Globin-like Riboflavin synthase domain-like 11
Tetrahydrobiopterin biosynthesis enzymes-like 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Nucleotide-binding domain 11
Flavoproteins Nitrite and sulphite reductase 4Fe-4S domain-like 11
Concanavalin A-like lectins/glucanases P-domain of calnexin/calreticulin 11
"Winged helix" DNA-binding domain Regulator of G-protein signaling, RGS 11
TPR-like RNA-binding domain, RBD 11
Nucleotide-binding domain Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Homing endonucleases 11
HisI-like all-alpha NTP pyrophosphatases 11
DEK C-terminal domain SWIB/MDM2 domain 11
EF-hand Adhesin YadA, collagen-binding domain 11
Regulator of G-protein signaling, RGS PX domain 11
Rudiment single hybrid motif ClpP/crotonase 11
Nucleic acid-binding proteins "Winged helix" DNA-binding domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Homeodomain-like MurD-like peptide ligases, peptide-binding domain 11
Cadherin-like Cadherin-like 11
PAH2 domain PAH2 domain 11
Periplasmic binding protein-like II ACT-like 11
Ras GEF PH domain-like 11
TK C-terminal domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NAD(P)-binding Rossmann-fold domains Galactose mutarotase-like 11
ENTH/VHS domain SH3-domain 11
Rudiment single hybrid motif PurM N-terminal domain-like 11
"Winged helix" DNA-binding domain RNA-binding domain, RBD 11
SMAD/FHA domain RING/U-box 11
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
NAD(P)-binding Rossmann-fold domains Thiolase-like 11
Acid proteases RING/U-box 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
PreATP-grasp domain N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 11
Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 Zinc beta-ribbon 11
Hedgehog/intein (Hint) domain C-terminal domain of alpha and beta subunits of F1 ATP synthase 11
Translation proteins Translation proteins 11
HAD-like HAD-like 11
Ribonuclease H-like Ran binding protein zinc finger-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
PUA domain-like PUA domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Aspartate/ornithine carbamoyltransferase 11
Amidase signature (AS) enzymes Single hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases Metallo-dependent phosphatases 11
Thiolase-like 4'-phosphopantetheinyl transferase 11
Ubiquitin-like Cap-Gly domain 11
cAMP-binding domain-like FabD/lysophospholipase-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
UBC-like Endosomal sorting complex assembly domain 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
RibA-like RibA-like 11
Clathrin heavy-chain terminal domain ARM repeat 11
Actin depolymerizing proteins Actin depolymerizing proteins 11
Methylglyoxal synthase-like Metallo-dependent hydrolases 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
dsRNA-binding domain-like Activating enzymes of the ubiquitin-like proteins 11
PYP-like sensor domain (PAS domain) CheY-like 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
C2 domain (Calcium/lipid-binding domain, CaLB) Translation proteins SH3-like domain 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
Dehydroquinate synthase-like Aldolase 11
Oligoxyloglucan reducing end-specific cellobiohydrolase Oligoxyloglucan reducing end-specific cellobiohydrolase 11
PH domain-like "Winged helix" DNA-binding domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Staphylococcal nuclease Tudor/PWWP/MBT 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Amidase signature (AS) enzymes PH0987 N-terminal domain-like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Rudiment single hybrid motif post-HMGL domain-like 11
RING/U-box UBA-like 11
E set domains E set domains 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
WD40 repeat-like Ribonuclease H-like 11
Surp module (SWAP domain) Surp module (SWAP domain) 11
E set domains Glycosyl hydrolase domain 11
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases GAF domain-like 11
UBC-like Ribosomal protein S5 domain 2-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
YbaK/ProRS associated domain C-terminal domain of ProRS 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
GST C-terminal domain-like Nucleotidylyl transferase 11
TK C-terminal domain-like Riboflavin synthase domain-like 11
GroEL apical domain-like SAICAR synthase-like 11
C2 domain (Calcium/lipid-binding domain, CaLB) WW domain 11
GAF domain-like CheY-like 11
Rhomboid-like Ubiquitin-like 11
WD40 repeat-like Cysteine-rich domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
EF-hand C2 domain (Calcium/lipid-binding domain, CaLB) 11
Ankyrin repeat PH domain-like 11
Leucine zipper domain YAP1 redox domain 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Subtilisin-like Galactose-binding domain-like 11
FabD/lysophospholipase-like Inosine monophosphate dehydrogenase (IMPDH) 11
Trypsin-like serine proteases Trypsin-like serine proteases 11
Arp2/3 complex subunits Arp2/3 complex subunits 11
Carbamate kinase-like ACT-like 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
PreATP-grasp domain PreATP-grasp domain 11
Rap30/74 interaction domains "Winged helix" DNA-binding domain 11
CoA-dependent acyltransferases ACP-like 11
Calponin-homology domain, CH-domain EB1 dimerisation domain-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Protease propeptides/inhibitors Zn-dependent exopeptidases 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Ras GEF GTPase activation domain, GAP 11
PUA domain-like eIF1-like 11
EPT/RTPC-like Aminoacid dehydrogenase-like, N-terminal domain 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Homodimeric domain of signal transducing histidine kinase 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
DNA polymerase beta, N-terminal domain-like Restriction endonuclease-like 11
PUA domain-like SWIB/MDM2 domain 11
Cyclophilin-like RNA-binding domain, RBD 11
Thiamin diphosphate-binding fold (THDP-binding) Nitrite and sulphite reductase 4Fe-4S domain-like 11
Class I glutamine amidotransferase-like ADC synthase 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Ankyrin repeat RCC1/BLIP-II 11
Galactose-binding domain-like Galactose mutarotase-like 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
UBA-like XPC-binding domain 11
VPS9 domain Ankyrin repeat 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
P-loop containing nucleoside triphosphate hydrolases Hedgehog/intein (Hint) domain 11
Zinc hairpin stack RING/U-box 11
Rudiment single hybrid motif PurM C-terminal domain-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
SurE-like Glutathione synthetase ATP-binding domain-like 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
EF-hand PLC-like phosphodiesterases 11
Aldolase Single hybrid motif 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
HR1 repeat C2 domain (Calcium/lipid-binding domain, CaLB) 11
Glutathione synthetase ATP-binding domain-like Metallo-dependent hydrolases 11
F-box domain Clavaminate synthase-like 11
BAH domain P-loop containing nucleoside triphosphate hydrolases 11
RNA-binding domain, RBD Ran binding protein zinc finger-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Amine oxidase N-terminal region Amine oxidase N-terminal region 11
vWA-like Cysteine-rich domain 11
Carbamate kinase-like PUA domain-like 11
NSFL1 (p97 ATPase) cofactor p47, SEP domain Ubiquitin-like 11
Chromo domain-like Chromo domain-like 11
Protease propeptides/inhibitors Glycoside hydrolase/deacetylase 11
Ribonuclease H-like Ribonuclease H-like 11
Endosomal sorting complex assembly domain VPS28 C-terminal domain-like 11
Histone-fold Histone-fold 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Protease propeptides/inhibitors Galactose mutarotase-like 11
FYSH domain Hypothetical protein AF0491, middle domain 11
Ribonuclease H-like SH2 domain 11
Cysteine proteinases Calpain large subunit, middle domain (domain III) 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
BAR/IMD domain-like "Winged helix" DNA-binding domain 11
Putative DNA-binding domain PheT/TilS domain 11
HisI-like ALDH-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
RNA-binding domain, RBD PABC (PABP) domain 11
UBC-like RING/U-box 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
Tex N-terminal region-like Ribonuclease H-like 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase Homing endonucleases 11
Trimeric LpxA-like enzymes ARM repeat 11
Ribonuclease H-like RuvA domain 2-like 11
Glutathione synthetase ATP-binding domain-like Aspartate/ornithine carbamoyltransferase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
Thioredoxin-like Galactose-binding domain-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain ARM repeat 11
BEACH domain WD40 repeat-like 11
Ubiquitin-like Zn-binding ribosomal proteins 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
FYVE/PHD zinc finger SET domain 11
BAR/IMD domain-like BAR/IMD domain-like 11
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
Amidase signature (AS) enzymes Cyclophilin-like 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
L domain-like Nucleotide cyclase 11
Cysteine proteinases Ribonuclease H-like 11
Ribosomal L27 protein-like I/LWEQ domain 11
PreATP-grasp domain PurM N-terminal domain-like 11
Ankyrin repeat Oxysterol-binding protein-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
TPR-like HCP-like 11
UBA-like Chaperone J-domain 11
cAMP-binding domain-like RNI-like 11
EPT/RTPC-like Aldolase 11
HMA, heavy metal-associated domain Cu,Zn superoxide dismutase-like 11
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Carbamoyl phosphate synthetase, large subunit connection domain Metallo-dependent hydrolases 11
P-loop containing nucleoside triphosphate hydrolases PRTase-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Putative isomerase YbhE WD40 repeat-like 11
Amidase signature (AS) enzymes Glutathione synthetase ATP-binding domain-like 11
Nucleic acid-binding proteins TPR-like 11
E set domains (Trans)glycosidases 11
C2 domain (Calcium/lipid-binding domain, CaLB) ARM repeat 11
UBA-like NSFL1 (p97 ATPase) cofactor p47, SEP domain 11
EF-hand Calponin-homology domain, CH-domain 11
L30e-like alpha/beta knot 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
FabD/lysophospholipase-like Thiolase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Ribosomal L27 protein-like Nucleic acid-binding proteins 11
Ubiquitin-like AN1-like Zinc finger 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase Quinoprotein alcohol dehydrogenase-like 11
Elongation factor TFIIS domain 2 Zinc beta-ribbon 11
Nucleotidylyl transferase Nucleotidylyl transferase 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Tricorn protease domain 2 WD40 repeat-like 11
all-alpha NTP pyrophosphatases ALDH-like 11
UBA-like UBA-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
RING/U-box Homeodomain-like 11
Dehydroquinate synthase-like EPT/RTPC-like 11
PH domain-like (Phosphotyrosine protein) phosphatases II 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
RCC1/BLIP-II POZ domain 11
Pre-PUA domain PUA domain-like 11
Thioredoxin-like eEF1-gamma domain 11
GAT-like domain Clathrin adaptor appendage domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain HAMP domain-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
PH domain-like ARM repeat 11
Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain ARM repeat 11
Chaperone J-domain Sec63 N-terminal domain-like 11
Ribokinase-like alpha/beta-Hydrolases 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
Protein kinase-like (PK-like) Polo-box domain 11
WD40 repeat-like DPP6 N-terminal domain-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
Ribokinase-like Heme oxygenase-like 11
SpoIIaa-like cAMP-binding domain-like 11
Supernatant protein factor (SPF), C-terminal domain PH domain-like 11
Adenine nucleotide alpha hydrolases-like Cytochrome P450 11
SMAD/FHA domain SMAD/FHA domain 11
Protein kinase-like (PK-like) Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
Protein kinase-like (PK-like) CheY-like 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
Dehydroquinate synthase-like NAD(P)-binding Rossmann-fold domains 11
PLC-like phosphodiesterases C2 domain (Calcium/lipid-binding domain, CaLB) 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
PH domain-like Ran binding protein zinc finger-like 11
TPR-like PIN domain-like 11
L domain-like PP2C-like 11
Tex N-terminal region-like RuvA domain 2-like 11
EPT/RTPC-like NAD(P)-binding Rossmann-fold domains 11
L domain-like DNase I-like 11
HMG-box HMG-box 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Ran binding protein zinc finger-like "Winged helix" DNA-binding domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Beta-D-glucan exohydrolase, C-terminal domain Anthrax protective antigen 11
UROD/MetE-like UROD/MetE-like 11
YjgF-like YjgF-like 11
PH domain-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Amidase signature (AS) enzymes Rudiment single hybrid motif 11
Protein kinase-like (PK-like) Translation proteins SH3-like domain 11
Ubiquitin-like XPC-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Kelch motif 11
WD40 repeat-like C2 domain (Calcium/lipid-binding domain, CaLB) 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Nucleotide-diphospho-sugar transferases ARM repeat 11
C2 domain (Calcium/lipid-binding domain, CaLB) GTPase activation domain, GAP 11
YbaK/ProRS associated domain Class II aaRS and biotin synthetases 11
SWIB/MDM2 domain eIF1-like 11
BAR/IMD domain-like ArfGap/RecO-like zinc finger 11
HR1 repeat Cysteine-rich domain 11
TPR-like F-box domain 11
SNARE fusion complex SNARE fusion complex 11
Cysteine proteinases UBA-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
Concanavalin A-like lectins/glucanases WD40 repeat-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Taf5 N-terminal domain-like WD40 repeat-like 11
NAD(P)-binding Rossmann-fold domains 4'-phosphopantetheinyl transferase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
WD40 repeat-like Zn-dependent exopeptidases 11
Ribulose-phoshate binding barrel Tryptophan synthase beta subunit-like PLP-dependent enzymes 11
L domain-like NTF2-like 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
Cell cycle regulatory proteins ARM repeat 11
CCCH zinc finger RING/U-box 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Cysteine-rich domain Cysteine-rich domain 11
NTF2-like RNA-binding domain, RBD 11
Adenine nucleotide alpha hydrolases-like YjgF-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Homing endonucleases Homing endonucleases 11
L domain-like RNI-like 11
GST C-terminal domain-like eEF1-gamma domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Metallo-dependent hydrolases Aspartate/ornithine carbamoyltransferase 11
BRCT domain P-loop containing nucleoside triphosphate hydrolases 11
Chaperone J-domain beta-beta-alpha zinc fingers 11
PH domain-like Protein kinase-like (PK-like) 11
EF-hand UBA-like 11
GINS helical bundle-like MurD-like peptide ligases, peptide-binding domain 11
PUA domain-like Nucleotidylyl transferase 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
Chaperone J-domain E set domains 11
Cap-Gly domain RNI-like 11
BRCT domain DNA/RNA polymerases 11
L domain-like UBA-like 11
GST C-terminal domain-like eEF-1beta-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]