SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Domain combination pairs in Thelohanellus kitauei

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

616 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Acid proteases DNA/RNA polymerases 12914
DNA/RNA polymerases Ribonuclease H-like 12017
Retrovirus zinc finger-like domains Acid proteases 809
Retrovirus zinc finger-like domains DNA/RNA polymerases 659
Acid proteases Ribonuclease H-like 6011
LDL receptor-like module LDL receptor-like module 6021
Retrovirus zinc finger-like domains Ribonuclease H-like 394
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3024
Actin-like ATPase domain Actin-like ATPase domain 257
RNA-binding domain, RBD RNA-binding domain, RBD 1910
beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers 156
HSP20-like chaperones HSP20-like chaperones 151
P-loop containing nucleoside triphosphate hydrolases Translation proteins 138
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 136
Kelch motif Kelch motif 131
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 126
NAD(P)-binding Rossmann-fold domains Formate/glycerate dehydrogenase catalytic domain-like 123
TPR-like TPR-like 108
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 105
HAD-like Calcium ATPase, transmembrane domain M 105
Oligoxyloglucan reducing end-specific cellobiohydrolase LDL receptor-like module 106
GroEL apical domain-like GroEL equatorial domain-like 83
Homeodomain-like Ribonuclease H-like 82
Nucleic acid-binding proteins Nucleic acid-binding proteins 75
ARM repeat ARM repeat 77
Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) 76
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 73
GroEL equatorial domain-like GroEL-intermediate domain like 61
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 61
Homeodomain-like Homeodomain-like 65
WD40 repeat-like WD40 repeat-like 64
ARM repeat Protein kinase-like (PK-like) 66
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 65
Thioredoxin-like Thioredoxin-like 64
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 64
GroEL-intermediate domain like GroEL apical domain-like 61
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 64
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 63
Subtilisin-like Galactose-binding domain-like 63
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 51
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 52
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 54
Sialidases LDL receptor-like module 54
EF-G C-terminal domain-like EF-G C-terminal domain-like 54
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 51
Cyclin-like Cyclin-like 53
PK beta-barrel domain-like PK C-terminal domain-like 52
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 52
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 54
Translation proteins EF-G C-terminal domain-like 54
Translation proteins Ribosomal protein S5 domain 2-like 54
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 53
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 53
CCCH zinc finger CCCH zinc finger 43
ABC transporter transmembrane region ABC transporter transmembrane region 43
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 44
BPTI-like BPTI-like 42
Actin depolymerizing proteins Actin depolymerizing proteins 44
PDZ domain-like PDZ domain-like 44
PR-1-like PR-1-like 43
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 44
Kelch motif Galactose oxidase, central domain 41
Ankyrin repeat Ankyrin repeat 42
RNase III domain-like RNase III domain-like 42
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 44
Thioredoxin-like GST C-terminal domain-like 41
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 43
Zn-finger domain of Sec23/24 beta-sandwich domain of Sec23/24 33
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
Zn-finger domain of Sec23/24 vWA-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
vWA-like beta-sandwich domain of Sec23/24 33
PDZ domain-like Glucocorticoid receptor-like (DNA-binding domain) 32
Cullin repeat-like Cullin homology domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Ribosomal L27 protein-like Nucleic acid-binding proteins 32
Calcium ATPase, transduction domain A HAD-like 32
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 32
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 32
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 32
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 33
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 32
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
SH2 domain (Phosphotyrosine protein) phosphatases II 33
SAM/Pointed domain SAM/Pointed domain 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Second domain of FERM PH domain-like 32
Translation proteins Initiation factor IF2/eIF5b, domain 3 33
Thiolase-like Thiolase-like 32
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 31
Ubiquitin-like Ubiquitin-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
SH3-domain P-loop containing nucleoside triphosphate hydrolases 33
Chromo domain-like P-loop containing nucleoside triphosphate hydrolases 32
ARM repeat Clathrin adaptor appendage domain 33
Transducin (alpha subunit), insertion domain P-loop containing nucleoside triphosphate hydrolases 32
Calponin-homology domain, CH-domain E set domains 22
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 21
beta-sandwich domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 22
Helical domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 22
Concanavalin A-like lectins/glucanases TSP-1 type 1 repeat 22
BRCT domain P-loop containing nucleoside triphosphate hydrolases 22
Chromo domain-like Chromo domain-like 21
beta-sandwich domain of Sec23/24 Helical domain of Sec23/24 22
Quinoprotein alcohol dehydrogenase-like WD40 repeat-like 22
Sec63 N-terminal domain-like Sec63 N-terminal domain-like 22
Metalloproteases ("zincins"), catalytic domain Blood coagulation inhibitor (disintegrin) 22
dsRNA-binding domain-like RNase III domain-like 21
FYVE/PHD zinc finger FYVE/PHD zinc finger 22
Transcription factor IIA (TFIIA), alpha-helical domain Transcription factor IIA (TFIIA), beta-barrel domain 21
Ubiquitin-like PH domain-like 21
"Winged helix" DNA-binding domain E set domains 22
Acetyl-CoA synthetase-like ACP-like 22
vWA-like Helical domain of Sec23/24 22
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 21
SNARE fusion complex SNARE fusion complex 22
Phosphofructokinase Phosphofructokinase 21
PLP-binding barrel Alanine racemase C-terminal domain-like 21
BRCT domain BRCT domain 22
P-loop containing nucleoside triphosphate hydrolases E set domains 22
E set domains E set domains 22
"Winged helix" DNA-binding domain E2F-DP heterodimerization region 22
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 22
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 22
RNA-binding domain, RBD PAP/OAS1 substrate-binding domain 22
EF-hand EF-hand 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 21
Myosin rod fragments P-loop containing nucleoside triphosphate hydrolases 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Myosin rod fragments Myosin rod fragments 22
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 21
P-loop containing nucleoside triphosphate hydrolases RNase III domain-like 21
dsRNA-binding domain-like P-loop containing nucleoside triphosphate hydrolases 21
Zn-finger domain of Sec23/24 C-terminal, gelsolin-like domain of Sec23/24 22
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 22
ARM repeat WD40 repeat-like 22
Clathrin heavy-chain terminal domain ARM repeat 22
PapD-like Periplasmic chaperone C-domain 21
SNARE-like Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 21
Nucleotidylyl transferase Nucleotidylyl transferase 21
Quinoprotein alcohol dehydrogenase-like Protein kinase-like (PK-like) 22
Ubiquitin-like Zn-binding ribosomal proteins 21
CheY-like C-terminal effector domain of the bipartite response regulators 21
(Trans)glycosidases Glycosyl hydrolase domain 22
Zn-finger domain of Sec23/24 Helical domain of Sec23/24 22
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 22
SMAD MH1 domain SMAD/FHA domain 21
SH3-domain SH3-domain 22
Phospholipase D/nuclease Phospholipase D/nuclease 21
RNA-binding domain, RBD Nucleotidyltransferase 22
RING/U-box RING/U-box 22
vWA-like C-terminal, gelsolin-like domain of Sec23/24 22
DNA/RNA polymerases DNA/RNA polymerases 21
DBL homology domain (DH-domain) PH domain-like 22
P-loop containing nucleoside triphosphate hydrolases PH domain-like 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
GMP synthetase C-terminal dimerisation domain GMP synthetase C-terminal dimerisation domain 21
Bromodomain Bromodomain 22
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 21
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 21
Nucleic acid-binding proteins Eukaryotic type KH-domain (KH-domain type I) 22
Sec63 N-terminal domain-like E set domains 22
Concanavalin A-like lectins/glucanases Concanavalin A-like lectins/glucanases 22
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 21
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 22
Bromodomain FYVE/PHD zinc finger 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PH domain-like FYVE/PHD zinc finger 21
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
SET domain beta-beta-alpha zinc fingers 22
ArfGap/RecO-like zinc finger Ankyrin repeat 22
Single hybrid motif CoA-dependent acyltransferases 22
Ubiquitin-like Second domain of FERM 21
Glutathione synthetase ATP-binding domain-like PreATP-grasp domain 22
FKBP-like TPR-like 22
PAZ domain Ribonuclease H-like 21
Ubiquitin-like SMAD/FHA domain 11
Hypothetical protein c14orf129, hspc210 TPR-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Glucocorticoid receptor-like (DNA-binding domain) SH3-domain 11
Spectrin repeat EF-hand 11
P-loop containing nucleoside triphosphate hydrolases HAND domain of the nucleosome remodeling ATPase ISWI 11
Retrovirus zinc finger-like domains RING/U-box 11
FMN-linked oxidoreductases NAD(P)-binding Rossmann-fold domains 11
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Concanavalin A-like lectins/glucanases BEACH domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Eukaryotic type KH-domain (KH-domain type I) Retrovirus zinc finger-like domains 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Clathrin adaptor appendage domain Subdomain of clathrin and coatomer appendage domain 11
Cytochrome b5-like heme/steroid binding domain Oxidoreductase molybdopterin-binding domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Nucleotidylyl transferase Class II aaRS and biotin synthetases 11
Second domain of FERM I/LWEQ domain 11
mRNA decapping enzyme DcpS N-terminal domain HIT-like 11
PreATP-grasp domain ClpP/crotonase 11
HMG-box HMG-box 11
Glutathione synthetase ATP-binding domain-like Phosphoglycerate mutase-like 11
P-loop containing nucleoside triphosphate hydrolases beta-beta-alpha zinc fingers 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Kringle-like Protein kinase-like (PK-like) 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
MIT domain P-loop containing nucleoside triphosphate hydrolases 11
ADC-like P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
CoA-dependent acyltransferases ACP-like 11
EGF/Laminin EGF/Laminin 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
CRAL/TRIO N-terminal domain Supernatant protein factor (SPF), C-terminal domain 11
Concanavalin A-like lectins/glucanases Fibrinogen C-terminal domain-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Tudor/PWWP/MBT Tudor/PWWP/MBT 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
TPR-like ARM repeat 11
BPTI-like Concanavalin A-like lectins/glucanases 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DNA-binding domain Bromodomain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
ARM repeat PH domain-like 11
HAND domain of the nucleosome remodeling ATPase ISWI Homeodomain-like 11
ARM repeat Quinoprotein alcohol dehydrogenase-like 11
B-box zinc-binding domain E set domains 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain ARM repeat 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
BPTI-like Invertebrate chitin-binding proteins 11
SAM/Pointed domain Cysteine-rich domain 11
Calponin-homology domain, CH-domain Calponin-homology domain, CH-domain 11
Concanavalin A-like lectins/glucanases Invertebrate chitin-binding proteins 11
CAD & PB1 domains PDZ domain-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
SAM/Pointed domain PH domain-like 11
Concanavalin A-like lectins/glucanases P-loop containing nucleoside triphosphate hydrolases 11
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 11
Clc chloride channel Clc chloride channel 11
Nucleotide cyclase EAL domain-like 11
Nucleic acid-binding proteins SH2 domain 11
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 11
DNA/RNA polymerases P-loop containing nucleoside triphosphate hydrolases 11
WD40 repeat-like Putative isomerase YbhE 11
SH3-domain ABC transporter transmembrane region 11
beta-beta-alpha zinc fingers Nucleotidyltransferase 11
DNA clamp DNA clamp 11
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 11
Concanavalin A-like lectins/glucanases WD40 repeat-like 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Sec7 domain PH domain-like 11
"Winged helix" DNA-binding domain HRDC-like 11
4Fe-4S ferredoxins TorD-like 11
Cysteine-rich domain SH2 domain 11
ADC-like Cdc48 domain 2-like 11
FF domain FF domain 11
Protein kinase-like (PK-like) Nucleotide cyclase 11
PH domain-like I/LWEQ domain 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
Ribonuclease H-like HRDC-like 11
Cysteine proteinases UBA-like 11
DNA breaking-rejoining enzymes Eukaryotic DNA topoisomerase I, dispensable insert domain 11
B-box zinc-binding domain Calcium-dependent phosphotriesterase 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
ARM repeat Formin homology 2 domain (FH2 domain) 11
PH domain-like Ankyrin repeat 11
Aldolase NAD(P)-binding Rossmann-fold domains 11
Ankyrin repeat Protein kinase-like (PK-like) 11
Nucleotide-diphospho-sugar transferases ARM repeat 11
P-loop containing nucleoside triphosphate hydrolases Phosphoglycerate mutase-like 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
PH domain-like EF-hand 11
ARM repeat P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
P-loop containing nucleoside triphosphate hydrolases Bromodomain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
RING/U-box TRAF domain-like 11
BPTI-like Fibrinogen C-terminal domain-like 11
Integrin domains Integrin domains 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ADC synthase Class I glutamine amidotransferase-like 11
Protein kinase-like (PK-like) WD40 repeat-like 11
(Phosphotyrosine protein) phosphatases II DNA ligase/mRNA capping enzyme, catalytic domain 11
PDZ domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ran binding protein zinc finger-like Ran binding protein zinc finger-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Single hybrid motif ClpP/crotonase 11
Protein kinase-like (PK-like) Tropomyosin 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Rap/Ran-GAP PDZ domain-like 11
Activating enzymes of the ubiquitin-like proteins Activating enzymes of the ubiquitin-like proteins 11
CCCH zinc finger RNA-binding domain, RBD 11
LEM domain Ankyrin repeat 11
Acyl-CoA N-acyltransferases (Nat) Homodimeric domain of signal transducing histidine kinase 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Pseudouridine synthase PUA domain-like 11
PreATP-grasp domain Single hybrid motif 11
TPR-like Chaperone J-domain 11
(Phosphotyrosine protein) phosphatases II Nucleic acid-binding proteins 11
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ARM repeat Subdomain of clathrin and coatomer appendage domain 11
GST C-terminal domain-like C-terminal domain of ProRS 11
WD40 repeat-like Bromodomain 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
RNA-binding domain, RBD SET domain 11
Surp module (SWAP domain) ENTH/VHS domain 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ubiquitin-like ARM repeat 11
Acyl-CoA N-acyltransferases (Nat) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
Translation proteins ThrRS/AlaRS common domain 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
ClpS-like Growth factor receptor domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CCCH zinc finger Retrovirus zinc finger-like domains 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
C2 domain (Calcium/lipid-binding domain, CaLB) Chaperone J-domain 11
Bromodomain TAZ domain 11
PriA/YqbF domain GINS helical bundle-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Ypt/Rab-GAP domain of gyp1p Ypt/Rab-GAP domain of gyp1p 11
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ankyrin repeat PDZ domain-like 11
Ribosomal L27 protein-like Eukaryotic type KH-domain (KH-domain type I) 11
Fibrinogen C-terminal domain-like TSP-1 type 1 repeat 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Protein kinase-like (PK-like) Apolipoprotein A-I 11
Smc hinge domain Tropomyosin 11
PH domain-like WD40 repeat-like 11
IHF-like DNA-binding proteins TraM-like 11
C2 domain (Calcium/lipid-binding domain, CaLB) ARM repeat 11
Protease propeptides/inhibitors Subtilisin-like 11
Galactose-binding domain-like Galactose-binding domain-like 11
WW domain Hect, E3 ligase catalytic domain 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
(Phosphotyrosine protein) phosphatases II C2 domain (Calcium/lipid-binding domain, CaLB) 11
TPR-like "Winged helix" DNA-binding domain 11
L domain-like Actin depolymerizing proteins 11
BAR/IMD domain-like SH3-domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
YdgH-like YdgH-like 11
L domain-like Calponin-homology domain, CH-domain 11
Ribosomal protein L25-like C-terminal domain of ProRS 11
Homeodomain-like Ubiquitin-like 11
ARM repeat FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 11
Protein kinase-like (PK-like) C2 domain (Calcium/lipid-binding domain, CaLB) 11
Arp2/3 complex subunits Arp2/3 complex subunits 11
Glucocorticoid receptor-like (DNA-binding domain) Multiheme cytochromes 11
BAR/IMD domain-like ArfGap/RecO-like zinc finger 11
RNA-binding domain, RBD Class II aaRS ABD-related 11
Nucleotidylyl transferase C-terminal domain of ProRS 11
Restriction endonuclease-like RuvA domain 2-like 11
Calponin-homology domain, CH-domain Spectrin repeat 11
beta-beta-alpha zinc fingers PAP/OAS1 substrate-binding domain 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
DNA-binding domain FYVE/PHD zinc finger 11
Acyl-CoA N-acyltransferases (Nat) Oxidoreductase molybdopterin-binding domain 11
Acetyl-CoA synthetase-like Quinoprotein alcohol dehydrogenase-like 11
DNA-glycosylase Nudix 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
beta-beta-alpha zinc fingers Hermes dimerisation domain 11
Chaperone J-domain beta-beta-alpha zinc fingers 11
ARM repeat BEACH domain 11
Protein kinase-like (PK-like) Cysteine-rich domain 11
Rudiment single hybrid motif Single hybrid motif 11
Actin-like ATPase domain AF1104-like 11
P-loop containing nucleoside triphosphate hydrolases HSP20-like chaperones 11
C2 domain (Calcium/lipid-binding domain, CaLB) C2 domain (Calcium/lipid-binding domain, CaLB) 11
FYVE/PHD zinc finger RING/U-box 11
Calponin-homology domain, CH-domain DBL homology domain (DH-domain) 11
Histone-fold ARM repeat 11
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 11
Ribosomal protein L25-like Class II aaRS and biotin synthetases 11
Cysteine-rich domain NAD kinase/diacylglycerol kinase-like 11
CCCH zinc finger RING/U-box 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Sialidases Sialidases 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
Oligoxyloglucan reducing end-specific cellobiohydrolase YWTD domain 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Chaperone J-domain RNA-binding domain, RBD 11
Surp module (SWAP domain) Ubiquitin-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
RING/U-box B-box zinc-binding domain 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Protein kinase-like (PK-like) Polo-box domain 11
ARM repeat DPP6 N-terminal domain-like 11
Galactose mutarotase-like (Trans)glycosidases 11
CRAL/TRIO N-terminal domain CRAL/TRIO domain 11
E set domains Calcium-dependent phosphotriesterase 11
TATA-box binding protein-like TATA-box binding protein-like 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
Immunoglobulin Immunoglobulin 11
Calponin-homology domain, CH-domain EF-hand 11
PRP4-like WD40 repeat-like 11
Calponin-homology domain, CH-domain EB1 dimerisation domain-like 11
PH domain-like BEACH domain 11
Actin depolymerizing proteins VHP, Villin headpiece domain 11
PDZ domain-like SH3-domain 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
ACP-like Quinoprotein alcohol dehydrogenase-like 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
beta-beta-alpha zinc fingers RNA-binding domain, RBD 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
PH domain-like Bet v1-like 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
RNA-binding domain, RBD Surp module (SWAP domain) 11
Surp module (SWAP domain) Surp module (SWAP domain) 11
Carboxypeptidase regulatory domain-like Cap-Gly domain 11
Zn-dependent exopeptidases Carboxypeptidase regulatory domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
HAD-like BRCT domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Plexin repeat vWA-like 11
Clc chloride channel CBS-domain pair 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Flavoproteins Riboflavin synthase domain-like 11
Ubiquitin-like Protein kinase-like (PK-like) 11
CRAL/TRIO domain Supernatant protein factor (SPF), C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PH domain-like PLC-like phosphodiesterases 11
"Winged helix" DNA-binding domain Ribokinase-like 11
DNase I-like GTPase activation domain, GAP 11
BAR/IMD domain-like Ankyrin repeat 11
PreATP-grasp domain Rudiment single hybrid motif 11
Macro domain-like Zn-dependent exopeptidases 11
EF-hand PLC-like phosphodiesterases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
Activator of Hsp90 ATPase, Aha1 Bet v1-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
cAMP-binding domain-like cAMP-binding domain-like 11
Cysteine-rich domain Ubiquitin-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
RING/U-box Calcium-dependent phosphotriesterase 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
GST C-terminal domain-like Ribosomal protein L25-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
RNA-binding domain, RBD SPOC domain-like 11
Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment DNA breaking-rejoining enzymes 11
BEACH domain WD40 repeat-like 11
Ribosomal protein L6 Ribosomal protein L6 11
BRCT domain DBL homology domain (DH-domain) 11
Notch domain Ankyrin repeat 11
dsRNA-binding domain-like dsRNA-binding domain-like 11
SAP domain P-loop containing nucleoside triphosphate hydrolases 11
Oxidoreductase molybdopterin-binding domain Homodimeric domain of signal transducing histidine kinase 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Tropomyosin Cysteine-rich domain 11
Nucleic acid-binding proteins TPR-like 11
NSFL1 (p97 ATPase) cofactor p47, SEP domain Ubiquitin-like 11
FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) Protein kinase-like (PK-like) 11
Concanavalin A-like lectins/glucanases PH domain-like 11
Protein kinase-like (PK-like) NTF2-like 11
Oxidoreductase molybdopterin-binding domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
GST C-terminal domain-like Class II aaRS ABD-related 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Thioredoxin-like 11
EF-hand SH3-domain 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
ARID-like Chromo domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
Bromodomain RING/U-box 11
Acylphosphatase/BLUF domain-like EAL domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
BAR/IMD domain-like GTPase activation domain, GAP 11
GST C-terminal domain-like Nucleotidylyl transferase 11
alpha-catenin/vinculin-like alpha-catenin/vinculin-like 11
FYVE/PHD zinc finger C2 domain (Calcium/lipid-binding domain, CaLB) 11
DNA/RNA polymerases S-adenosyl-L-methionine-dependent methyltransferases 11
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) Lipoxigenase 11
PHP domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like Ribonuclease H-like 11
Ribonuclease H-like Integrin alpha N-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
Metallo-dependent phosphatases Homeodomain-like 11
RING/U-box UBA-like 11
RING/U-box E set domains 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Zinc-binding domain of translation initiation factor 2 beta ARM repeat 11
N-terminal domain of adenylylcyclase associated protein, CAP C-terminal domain of adenylylcyclase associated protein 11
Nucleic acid-binding proteins "Winged helix" DNA-binding domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Voltage-gated potassium channels Voltage-gated potassium channels 11
PH domain-like Oxysterol-binding protein-like 11
Translation proteins Translation proteins 11
4Fe-4S ferredoxins RNA-binding domain, RBD 11
Ribonuclease H-like TPR-like 11
L domain-like L domain-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 11
Cysteine proteinases Transglutaminase, two C-terminal domains 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosylmethionine decarboxylase 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 11
BRCT domain post-AAA+ oligomerization domain-like 11
Polo-box domain Polo-box domain 11
FYVE/PHD zinc finger TAZ domain 11
Cysteine proteinases Cysteine proteinases 11
Cysteine-rich domain GTPase activation domain, GAP 11
S-adenosyl-L-methionine-dependent methyltransferases Ribonuclease H-like 11
Rudiment single hybrid motif ClpP/crotonase 11
post-HMGL domain-like Single hybrid motif 11
Protein kinase-like (PK-like) Chaperone J-domain 11
F-box domain WD40 repeat-like 11
TSP-1 type 1 repeat Invertebrate chitin-binding proteins 11
Ribosomal protein L25-like Class II aaRS ABD-related 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 11
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glucocorticoid receptor-like (DNA-binding domain) Ribonuclease H-like 11
cAMP-binding domain-like FabD/lysophospholipase-like 11
CBS-domain pair cAMP-binding domain-like 11
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 11
Galactose-binding domain-like C-type lectin-like 11
Nucleotidylyl transferase Class II aaRS ABD-related 11
Sec7 domain ARM repeat 11
Eukaryotic RPB5 N-terminal domain RPB5-like RNA polymerase subunit 11
BPTI-like TSP-1 type 1 repeat 11
MFS general substrate transporter P-loop containing nucleoside triphosphate hydrolases 11
FYSH domain Hypothetical protein AF0491, middle domain 11
P-loop containing nucleoside triphosphate hydrolases RING/U-box 11
RNA-binding domain, RBD ENTH/VHS domain 11
P-loop containing nucleoside triphosphate hydrolases Tudor/PWWP/MBT 11
DNA polymerase beta, N-terminal domain-like Restriction endonuclease-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Trimeric LpxA-like enzymes ARM repeat 11
Lipase/lipooxygenase domain (PLAT/LH2 domain) Galactose-binding domain-like 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
ARM repeat Concanavalin A-like lectins/glucanases 11
Spectrin repeat Spectrin repeat 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
(Phosphotyrosine protein) phosphatases II FYVE/PHD zinc finger 11
Integrin alpha N-terminal domain Integrin domains 11
PDZ domain-like BAR/IMD domain-like 11
Rap30/74 interaction domains "Winged helix" DNA-binding domain 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
ClpP/crotonase ClpP/crotonase 11
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
HLH, helix-loop-helix DNA-binding domain PYP-like sensor domain (PAS domain) 11
SH3-domain Ankyrin repeat 11
RING/U-box Cysteine proteinases 11
RING/U-box beta-beta-alpha zinc fingers 11
ENTH/VHS domain SH3-domain 11
OMPA-like OmpA-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
BAR/IMD domain-like PH domain-like 11
Ubiquitin-like UBA-like 11
FYVE/PHD zinc finger Acyl-CoA N-acyltransferases (Nat) 11
Nucleotide-diphospho-sugar transferases Ricin B-like lectins 11
SAP domain Concanavalin A-like lectins/glucanases 11
WW domain WW domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
TSP-1 type 1 repeat TSP-1 type 1 repeat 11
PurM N-terminal domain-like PurM C-terminal domain-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
PH domain-like ArfGap/RecO-like zinc finger 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Fibrinogen C-terminal domain-like Invertebrate chitin-binding proteins 11
GTPase activation domain, GAP Bet v1-like 11
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
E set domains Cysteine proteinases 11
Chromo domain-like Acyl-CoA N-acyltransferases (Nat) 11
GST C-terminal domain-like Class II aaRS and biotin synthetases 11
ENTH/VHS domain GAT-like domain 11
P-loop containing nucleoside triphosphate hydrolases PRTase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Ribbon-helix-helix Acyl-CoA N-acyltransferases (Nat) 11
E set domains Transglutaminase, two C-terminal domains 11
PH domain-like Moesin tail domain 11
Tudor/PWWP/MBT HSP20-like chaperones 11
Immunoglobulin Fibronectin type III 11
CRAL/TRIO domain GTPase activation domain, GAP 11
P-loop containing nucleoside triphosphate hydrolases RNA-binding domain, RBD 11
YWTD domain LDL receptor-like module 11
TPR-like Ankyrin repeat 11
RING/U-box TAZ domain 11
Phosphotyrosine protein phosphatases I P-loop containing nucleoside triphosphate hydrolases 11
Seven-hairpin glycosidases PA domain 11
SAND domain-like HIT/MYND zinc finger-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]