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Domain combination pairs in Methylomicrobium alcaliphilum

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

767 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4733
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3515
Nucleotide cyclase EAL domain-like 3418
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 3428
PYP-like sensor domain (PAS domain) Nucleotide cyclase 3117
PYP-like sensor domain (PAS domain) EAL domain-like 2915
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2522
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2421
CheY-like PYP-like sensor domain (PAS domain) 2014
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1816
CheY-like Homodimeric domain of signal transducing histidine kinase 1715
CheY-like Nucleotide cyclase 179
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 155
CheY-like C-terminal effector domain of the bipartite response regulators 143
CheY-like EAL domain-like 136
Actin-like ATPase domain Actin-like ATPase domain 126
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 125
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 124
CheY-like CheY-like 1110
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 114
Cytochrome c Cytochrome c 115
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 105
TPR-like TPR-like 105
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 108
Histidine-containing phosphotransfer domain, HPT domain CheY-like 99
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 94
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 94
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
GAF domain-like PYP-like sensor domain (PAS domain) 99
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 83
CheY-like P-loop containing nucleoside triphosphate hydrolases 83
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 83
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 88
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 85
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 82
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 76
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 73
Calcium ATPase, transduction domain A HAD-like 77
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 75
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 75
GAF domain-like Homodimeric domain of signal transducing histidine kinase 77
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
GAF domain-like Nucleotide cyclase 77
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 74
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 76
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 64
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 64
CheY-like HD-domain/PDEase-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
HAD-like Calcium ATPase, transmembrane domain M 66
CheY-like Homeodomain-like 61
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 61
Histidine-containing phosphotransfer domain, HPT domain PYP-like sensor domain (PAS domain) 66
Cupredoxins Cupredoxins 64
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 66
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 54
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 54
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 54
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 54
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 53
Homeodomain-like Ribonuclease H-like 51
(Trans)glycosidases Glycosyl hydrolase domain 54
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 54
PLP-binding barrel Alanine racemase C-terminal domain-like 53
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 54
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 53
Thiolase-like Thiolase-like 51
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 53
cAMP-binding domain-like "Winged helix" DNA-binding domain 51
CoA-dependent acyltransferases CoA-dependent acyltransferases 44
PDZ domain-like PDZ domain-like 43
GAF domain-like EAL domain-like 44
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 41
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Translation proteins EF-G C-terminal domain-like 43
HD-domain/PDEase-like GAF domain-like 44
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
E set domains (Trans)glycosidases 43
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
HAMP domain-like CheY-like 44
HAMP domain-like PYP-like sensor domain (PAS domain) 44
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 42
PreATP-grasp domain Rudiment single hybrid motif 41
ACT-like ACT-like 43
Nucleic acid-binding proteins Nucleic acid-binding proteins 43
FKBP-like Triger factor/SurA peptide-binding domain-like 43
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 41
PurM N-terminal domain-like PurM C-terminal domain-like 42
GAF domain-like GAF domain-like 44
Trypsin-like serine proteases PDZ domain-like 43
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
DNA methylase specificity domain DNA methylase specificity domain 41
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 31
Acetyl-CoA synthetase-like ACP-like 33
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 33
Homodimeric domain of signal transducing histidine kinase CheW-like 31
GroES-like NAD(P)-binding Rossmann-fold domains 31
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
Phage tail proteins gp5 N-terminal domain-like 33
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 32
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 32
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 33
ACP-like CoA-dependent acyltransferases 33
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 33
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 33
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
Restriction endonuclease-like P-loop containing nucleoside triphosphate hydrolases 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
CBS-domain pair MgtE membrane domain-like 31
Alpha-L RNA-binding motif Pseudouridine synthase 31
HMA, heavy metal-associated domain HAD-like 33
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 33
MgtE N-terminal domain-like MgtE membrane domain-like 31
CheY-like Methylesterase CheB, C-terminal domain 31
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 32
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
RuvA domain 2-like Nucleic acid-binding proteins 33
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
GAF domain-like CheY-like 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 33
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 33
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 33
Nucleotidyltransferase HD-domain/PDEase-like 32
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 33
Caspase-like HCP-like 33
HD-domain/PDEase-like ACT-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
Translation proteins SH3-like domain Nucleic acid-binding proteins 32
E set domains Glycosyl hydrolase domain 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
MgtE N-terminal domain-like CBS-domain pair 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Phospholipase D/nuclease Phospholipase D/nuclease 32
cAMP-binding domain-like HD-domain/PDEase-like 31
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 32
Nucleotidyltransferase ACT-like 32
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 32
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
Flavoproteins Riboflavin synthase domain-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 22
PHP14-like Phospholipase D/nuclease 21
HCP-like Lysozyme-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
post-HMGL domain-like Single hybrid motif 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 22
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 22
SMAD/FHA domain SMAD/FHA domain 22
S-adenosyl-L-methionine-dependent methyltransferases EAL domain-like 21
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 22
Siroheme synthase middle domains-like Tetrapyrrole methylase 21
OMPA-like TSP type-3 repeat 21
PP2C-like PYP-like sensor domain (PAS domain) 22
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 22
Thioredoxin-like Nqo1C-terminal domain-like 22
OMPA-like OmpA-like 21
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
PPK N-terminal domain-like Phospholipase D/nuclease 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Protein kinase-like (PK-like) TPR-like 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 22
Carbamate kinase-like ACT-like 22
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain Nucleotide cyclase 21
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 21
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 21
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 21
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
ClpP/crotonase NfeD domain-like 22
HD-domain/PDEase-like TGS-like 21
Zinc beta-ribbon Zinc beta-ribbon 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 21
TSP type-3 repeat OmpA-like 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain EAL domain-like 21
Methylesterase CheB, C-terminal domain EAL domain-like 21
TGS-like ACT-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
LeuD/IlvD-like Aconitase iron-sulfur domain 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 22
Thioredoxin-like Nqo1 FMN-binding domain-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
PPK N-terminal domain-like PHP14-like 21
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Aldolase post-HMGL domain-like 21
"Winged helix" DNA-binding domain LexA/Signal peptidase 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
Periplasmic binding protein-like II HD-domain/PDEase-like 22
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 22
Nucleotidyltransferase TGS-like 21
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
gp5 N-terminal domain-like Phage fibre proteins 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Protein kinase-like (PK-like) GAF domain-like 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
Phage tail proteins Phage fibre proteins 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
ACP-like NAD(P)-binding Rossmann-fold domains 22
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide cyclase 21
Phage tail proteins Phage tail proteins 22
Single hybrid motif CoA-dependent acyltransferases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Aldolase Single hybrid motif 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 22
Methylesterase CheB, C-terminal domain Nucleotide cyclase 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Thioredoxin-like Nqo1 middle domain-like 22
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Periplasmic binding protein-like II GAF domain-like 22
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
CarD-like TRCF domain-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
Phage fibre proteins Phage fibre proteins 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
CheY-like TPR-like 11
Galactose mutarotase-like Six-hairpin glycosidases 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Hemerythrin-like PYP-like sensor domain (PAS domain) 11
Nudix Thiamin phosphate synthase 11
RibA-like Dihydrofolate reductase-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Periplasmic binding protein-like II EAL domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
HesB-like domain SufE/NifU 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
C-terminal domain of transcriptional repressors P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like JAB1/MPN domain 11
Periplasmic binding protein-like I PYP-like sensor domain (PAS domain) 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
TPR-like GAF domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Translation proteins ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
ACP-like ACP-like 11
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Histidine-containing phosphotransfer domain, HPT domain Nucleotide cyclase 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Trigger factor ribosome-binding domain FKBP-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Translation proteins Translation proteins 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
PurS-like FGAM synthase PurL, linker domain 11
Tropomyosin Caspase-like 11
Formyltransferase FMT C-terminal domain-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Subtilisin-like Type I dockerin domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
S-adenosyl-L-methionine-dependent methyltransferases Tropomyosin 11
Hsp33 domain HSP33 redox switch-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
P-loop containing nucleoside triphosphate hydrolases Nucleotide cyclase 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
YajQ-like YajQ-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
NTF2-like Sec-C motif 11
Ribonuclease H-like HRDC-like 11
Periplasmic binding protein-like II Nucleotide cyclase 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
CheC-like Surface presentation of antigens (SPOA) 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Rubredoxin-like Metallo-hydrolase/oxidoreductase 11
Sensory domain-like CheY-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Periplasmic binding protein-like I Nucleotide cyclase 11
RuvA domain 2-like RuvA domain 2-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
HAMP domain-like Nucleotide cyclase 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Pseudouridine synthase PUA domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Lysozyme-like Sporulation related repeat 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Sensory domain-like Sensory domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Bacterial muramidases Lysozyme-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
YVTN repeat-like/Quinoprotein amine dehydrogenase YVTN repeat-like/Quinoprotein amine dehydrogenase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Thiolase-like FabD/lysophospholipase-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
Lysozyme-like LysM domain 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Translation proteins PRC-barrel domain 11
SMAD/FHA domain Nucleotide cyclase 11
Periplasmic binding protein-like II ACT-like 11
Thioredoxin-like GST C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
HAMP domain-like GAF domain-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
TGS-like ThrRS/AlaRS common domain 11
vWA-like TPR-like 11
PLP-dependent transferases PLP-dependent transferases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Hedgehog/intein (Hint) domain Homing endonucleases 11
Aldolase AFP III-like domain 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
EAL domain-like HD-domain/PDEase-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
PRC-barrel domain PRC-barrel domain 11
TPR-like Nucleotide cyclase 11
HCP-like HCP-like 11
PIN domain-like Ribonuclease H-like 11
Periplasmic binding protein-like I EAL domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
FAD-linked oxidoreductase ALDH-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PIN domain-like DNA/RNA polymerases 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
Periplasmic binding protein-like II Lysozyme-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Phospholipase D/nuclease LexA/Signal peptidase 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
PFL-like glycyl radical enzymes Homing endonucleases 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Protein kinase-like (PK-like) Nucleotide cyclase 11
Macro domain-like Zn-dependent exopeptidases 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
HD-domain/PDEase-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Zinc beta-ribbon DNA primase core 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
MetI-like MetI-like 11
Cytochrome P450 4Fe-4S ferredoxins 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PreATP-grasp domain PreATP-grasp domain 11
CRISPR-associated protein CRISPR-associated protein 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Ribosomal protein L6 Ribosomal protein L6 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
RNase III domain-like dsRNA-binding domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Nucleotidyltransferase Nucleotidyltransferase 11
Class II aaRS and biotin synthetases Translation proteins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Tropomyosin 11
Homeodomain-like Homeodomain-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
PYP-like sensor domain (PAS domain) HD-domain/PDEase-like 11
Globin-like PYP-like sensor domain (PAS domain) 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
FKBP-like FKBP-like 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
Thioredoxin-like Cytochrome c 11
Carbamate kinase-like PUA domain-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Galactose oxidase, central domain Kelch motif 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
FMN-binding split barrel UbiD C-terminal domain-like 11
cAMP-binding domain-like Rhodanese/Cell cycle control phosphatase 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ribulose-phoshate binding barrel SIS domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Sporulation related repeat Sporulation related repeat 11
CheY-like PP2C-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
PUA domain-like alpha/beta knot 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
EAL domain-like Acylphosphatase/BLUF domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Nucleic acid-binding proteins GAD domain-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Thiolase-like ACP-like 11
Resolvase-like Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
DPP6 N-terminal domain-like TPR-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Hemerythrin-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
PFL-like glycyl radical enzymes PFL-like glycyl radical enzymes 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
RuvA domain 2-like BRCT domain 11
HAMP domain-like EAL domain-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
cAMP-binding domain-like cAMP-binding domain-like 11
PDZ domain-like ClpP/crotonase 11
Methylesterase CheB, C-terminal domain Tropomyosin 11
Periplasmic binding protein-like II CheY-like 11
Globin-like Homodimeric domain of signal transducing histidine kinase 11
TerB-like Chaperone J-domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
Ribonuclease H-like RuvA domain 2-like 11
Sensory domain-like Periplasmic binding protein-like II 11
Tex N-terminal region-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
CheY-like EspE N-terminal domain-like 11
FliG FliG 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Putative DNA-binding domain Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases LexA/Signal peptidase 11
PP2C-like Protein kinase-like (PK-like) 11
Hedgehog/intein (Hint) domain PFL-like glycyl radical enzymes 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
"Winged helix" DNA-binding domain GAF domain-like 11
MOP-like MOP-like 11
DNA clamp DNA clamp 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
PurS-like PurM N-terminal domain-like 11
MoaD/ThiS ThiG-like 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
L30e-like alpha/beta knot 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Sensory domain-like HD-domain/PDEase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Cupredoxins Cytochrome c 11
Methionine synthase domain Methionine synthase activation domain-like 11
TGS-like Class II aaRS ABD-related 11
Tex N-terminal region-like Ribonuclease H-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
His-Me finger endonucleases DNA-binding domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Galactose mutarotase-like Galactose mutarotase-like 11
PilZ domain-like EspE N-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
YrdC/RibB Actin-like ATPase domain 11
GroEL equatorial domain-like GroEL apical domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Smc hinge domain Tropomyosin 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Trypsin-like serine proteases SMAD/FHA domain 11
2Fe-2S ferredoxin-like ADC-like 11
FabD/lysophospholipase-like ACP-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Cupredoxins Nitrous oxide reductase, N-terminal domain 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Dihydropteroate synthetase-like Methionine synthase domain 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
beta-Roll beta-Roll 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
SMAD/FHA domain P-loop containing nucleoside triphosphate hydrolases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
PurS-like Class I glutamine amidotransferase-like 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
MFS general substrate transporter MFS general substrate transporter 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
Zn-dependent exopeptidases LysM domain 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
YrdC/RibB RibA-like 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
PYP-like sensor domain (PAS domain) Acylphosphatase/BLUF domain-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 11
PurS-like PurM C-terminal domain-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Zinc beta-ribbon 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
vWA-like SMAD/FHA domain 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Globin-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
HRDC-like HRDC-like 11
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 11
PheT/TilS domain Putative DNA-binding domain 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Periplasmic binding protein-like I Acylphosphatase/BLUF domain-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Tetrapyrrole methylase Heme iron utilization protein-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
YgfB-like Sec-C motif 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
"Winged helix" DNA-binding domain MOP-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
DNA primase core DNA primase DnaG, C-terminal domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
EAL domain-like Sensory domain-like 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
4Fe-4S ferredoxins ADC-like 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
PilZ domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
GAF domain-like Homeodomain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
GIY-YIG endonuclease RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Ankyrin repeat 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
PP2C-like Nucleotide cyclase 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
CheW-like CheY-like 11
PKD domain PKD domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Nucleotide cyclase Acylphosphatase/BLUF domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Hemerythrin-like Homodimeric domain of signal transducing histidine kinase 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
LysM domain LysM domain 11
Fic-like "Winged helix" DNA-binding domain 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Ribonuclease H-like DNA/RNA polymerases 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
Chorismate mutase II ACT-like 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
HCP-like Tropomyosin 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Tropomyosin PYP-like sensor domain (PAS domain) 11
PRTase-like PRTase-like 11
PP2C-like EAL domain-like 11
Serine metabolism enzymes domain ACT-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Putative isomerase YbhE MetI-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
HD-domain/PDEase-like Nucleotide cyclase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
DNA-glycosylase Nudix 11
MesJ substrate recognition domain-like PheT/TilS domain 11

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