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Domain combination pairs in Methylophaga sp. JAM1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

595 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2714
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2514
PYP-like sensor domain (PAS domain) Nucleotide cyclase 2016
EAL domain-like Nucleotide cyclase 1714
CheY-like C-terminal effector domain of the bipartite response regulators 151
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 134
PYP-like sensor domain (PAS domain) EAL domain-like 1210
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 111
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1010
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 105
Actin-like ATPase domain Actin-like ATPase domain 103
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 104
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
GAF domain-like Nucleotide cyclase 97
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 94
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 94
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 94
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 99
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 94
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 85
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 88
P-loop containing nucleoside triphosphate hydrolases Translation proteins 86
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 84
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 83
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
CheY-like Homeodomain-like 71
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 73
PYP-like sensor domain (PAS domain) CheY-like 76
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 73
CheY-like P-loop containing nucleoside triphosphate hydrolases 71
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 77
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 74
TPR-like TPR-like 65
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 62
Homodimeric domain of signal transducing histidine kinase CheY-like 66
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 63
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
PYP-like sensor domain (PAS domain) GAF domain-like 66
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 65
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 54
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
CheY-like Nucleotide cyclase 53
ACT-like ACT-like 54
EAL domain-like GAF domain-like 54
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 54
Homeodomain-like Homeodomain-like 51
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 41
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 44
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Translation proteins EF-G C-terminal domain-like 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
P-loop containing nucleoside triphosphate hydrolases MOP-like 41
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 42
PLP-binding barrel Alanine racemase C-terminal domain-like 43
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 41
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 43
PreATP-grasp domain Rudiment single hybrid motif 41
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
CheY-like EAL domain-like 42
PDZ domain-like PDZ domain-like 43
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Phospholipase D/nuclease Phospholipase D/nuclease 33
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 33
Thioredoxin-like GST C-terminal domain-like 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
HAMP domain-like EAL domain-like 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
TrkA C-terminal domain-like TrkA C-terminal domain-like 32
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 31
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 32
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 33
4Fe-4S ferredoxins ADC-like 31
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
CheY-like GAF domain-like 32
Periplasmic binding protein-like II Nucleotide cyclase 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
HAMP domain-like PYP-like sensor domain (PAS domain) 33
HAMP domain-like Nucleotide cyclase 33
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 31
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 32
HAD-like Calcium ATPase, transmembrane domain M 33
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Nqo1 middle domain-like Nqo1C-terminal domain-like 33
Calcium ATPase, transduction domain A HAD-like 33
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 32
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 32
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
2Fe-2S ferredoxin-like ADC-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Cytochrome c Cytochrome c 32
CheW-like CheY-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
Aldolase post-HMGL domain-like 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
(Trans)glycosidases Glycosyl hydrolase domain 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
HMA, heavy metal-associated domain HAD-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Cupredoxins Cupredoxins 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 22
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
Trypsin-like serine proteases PDZ domain-like 21
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 21
Carbamate kinase-like ACT-like 22
beta-Roll beta-Roll 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
CheY-like CheY-like 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
CheY-like HD-domain/PDEase-like 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
DNA methylase specificity domain DNA methylase specificity domain 21
post-HMGL domain-like Single hybrid motif 21
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 21
Nucleotidyltransferase HD-domain/PDEase-like 22
Periplasmic binding protein-like II EAL domain-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Aldolase Single hybrid motif 21
CheY-like Histidine-containing phosphotransfer domain, HPT domain 22
HD-domain/PDEase-like ACT-like 22
HlyD-like secretion proteins HlyD-like secretion proteins 21
HAMP domain-like GAF domain-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 21
Periplasmic binding protein-like II Periplasmic binding protein-like II 22
Periplasmic binding protein-like II CheY-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
Nucleotidyltransferase ACT-like 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Calcium ATPase, transmembrane domain M Metal cation-transporting ATPase, ATP-binding domain N 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 22
Thiolase-like Thiolase-like 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Lysozyme-like beta-lactamase/transpeptidase-like 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Globin-like Riboflavin synthase domain-like 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
cAMP-binding domain-like "Winged helix" DNA-binding domain 21
GroES-like NAD(P)-binding Rossmann-fold domains 21
Nucleic acid-binding proteins RuvA domain 2-like 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
MetI-like MetI-like 21
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 21
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
EAL domain-like CBS-domain pair 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
L30e-like alpha/beta knot 11
Thioredoxin-like Thioredoxin-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
cAMP-binding domain-like CBS-domain pair 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
RuvA domain 2-like JAB1/MPN domain 11
TGS-like Class II aaRS ABD-related 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
CBS-domain pair MgtE membrane domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Class II aaRS and biotin synthetases Translation proteins 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Lysozyme-like LysM domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PurS-like FGAM synthase PurL, linker domain 11
Thioredoxin-like Nqo1 middle domain-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
lambda repressor-like DNA-binding domains PYP-like sensor domain (PAS domain) 11
FliG FliG 11
PP2C-like Protein kinase-like (PK-like) 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
beta-Roll Cadherin-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Sensory domain-like HAMP domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Tropomyosin vWA-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribosomal protein L6 Ribosomal protein L6 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
S-adenosyl-L-methionine-dependent methyltransferases MFS general substrate transporter 11
Pseudouridine synthase PUA domain-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Nucleotidyltransferase TGS-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
NTF2-like Sec-C motif 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Ribonuclease H-like HRDC-like 11
HD-domain/PDEase-like TGS-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Flavoproteins Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
RuvA domain 2-like BRCT domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
TGS-like ThrRS/AlaRS common domain 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
LysM domain LysM domain 11
DNA-glycosylase Nudix 11
GAF domain-like GAF domain-like 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
PheT/TilS domain Putative DNA-binding domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
DinB/YfiT-like putative metalloenzymes S-adenosyl-L-methionine-dependent methyltransferases 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Barwin-like endoglucanases Sporulation related repeat 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Enolase N-terminal domain-like Enolase C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
CheC-like Surface presentation of antigens (SPOA) 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Putative DNA-binding domain Translation proteins 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Zinc beta-ribbon Zinc beta-ribbon 11
ACT-like Formyltransferase 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
GroEL-intermediate domain like GroEL apical domain-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
FMN-binding split barrel UbiD C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
MFS general substrate transporter MFS general substrate transporter 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
LeuD/IlvD-like Aconitase iron-sulfur domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Ribokinase-like Nucleotidylyl transferase 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
alpha/beta-Hydrolases beta-Roll 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidylyl transferase tRNA-binding arm 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
RNase III domain-like dsRNA-binding domain-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
DNA primase core DNA primase DnaG, C-terminal domain 11
CarD-like TRCF domain-like 11
Single hybrid motif CoA-dependent acyltransferases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
DNA clamp DNA clamp 11
Nucleic acid-binding proteins BRCT domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
EAL domain-like Sensory domain-like 11
YrdC/RibB RibA-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 11
Ribonuclease H-like GIY-YIG endonuclease 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleotide-diphospho-sugar transferases P-loop containing nucleoside triphosphate hydrolases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
alpha/beta-Hydrolases Cadherin-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Thermostable phytase (3-phytase) Thermostable phytase (3-phytase) 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Hsp33 domain HSP33 redox switch-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Zinc beta-ribbon DNA primase core 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
TGS-like Class II aaRS and biotin synthetases 11
ClpP/crotonase NfeD domain-like 11
EAL domain-like HD-domain/PDEase-like 11
Soluble quinoprotein glucose dehydrogenase Calcium-dependent phosphotriesterase 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Dimeric alpha+beta barrel Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
PUA domain-like alpha/beta knot 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Macro domain-like Zn-dependent exopeptidases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Metallo-dependent phosphatases UDP-Glycosyltransferase/glycogen phosphorylase 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase Nucleotidyltransferase 11
Chorismate mutase II ACT-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PurS-like PurM C-terminal domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Ribokinase-like Thiamin phosphate synthase 11
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
YjeF N-terminal domain-like Ribokinase-like 11
PurS-like Class I glutamine amidotransferase-like 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
WD40 repeat-like MetI-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Formyltransferase FMT C-terminal domain-like 11
UDP-Glycosyltransferase/glycogen phosphorylase HAD-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
HD-domain/PDEase-like GAF domain-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
E set domains Glycosyl hydrolase domain 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
PHP14-like Phospholipase D/nuclease 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
YajQ-like YajQ-like 11
TGS-like ACT-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Zn-dependent exopeptidases LysM domain 11
PIN domain-like Ribonuclease H-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Globin-like PYP-like sensor domain (PAS domain) 11
Chorismate mutase II Periplasmic binding protein-like II 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like DNA/RNA polymerases 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
FKBP-like FKBP-like 11
Globin-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Fic-like "Winged helix" DNA-binding domain 11
CheY-like Methylesterase CheB, C-terminal domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Globin-like GAF domain-like 11
Globin-like Nucleotide cyclase 11
TPR-like Clavaminate synthase-like 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Nucleic acid-binding proteins GAD domain-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide cyclase Nucleotide cyclase 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
TSP type-3 repeat OmpA-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Sensory domain-like Nucleotide cyclase 11
HMA, heavy metal-associated domain Metal cation-transporting ATPase, ATP-binding domain N 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 11
"Winged helix" DNA-binding domain Nucleotidyltransferase 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Trigger factor ribosome-binding domain FKBP-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Translation proteins Translation proteins 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins PRC-barrel domain 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Periplasmic binding protein-like II ACT-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Globin-like EAL domain-like 11
PPK N-terminal domain-like PHP14-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
GroEL equatorial domain-like GroEL apical domain-like 11
PDZ domain-like ClpP/crotonase 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
PurS-like PurM N-terminal domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
UROD/MetE-like UROD/MetE-like 11
Protein kinase-like (PK-like) Protein kinase-like (PK-like) 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
E set domains (Trans)glycosidases 11
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 11
Bacterial muramidases Lysozyme-like 11
HRDC-like HRDC-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Cadherin-like Cadherin-like 11
MgtE N-terminal domain-like CBS-domain pair 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like PUA domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Periplasmic binding protein-like II Lysozyme-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Translation proteins ThrRS/AlaRS common domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
PH0987 N-terminal domain-like Cyclophilin-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair Nucleotide cyclase 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11

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