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Domain combination pairs in Burkholderia sp. CCGE1002

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

833 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1383
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 6029
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4816
Homeodomain-like Homeodomain-like 4610
CheY-like C-terminal effector domain of the bipartite response regulators 383
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 334
GroES-like NAD(P)-binding Rossmann-fold domains 322
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 287
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2721
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 2618
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 263
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 252
Actin-like ATPase domain Actin-like ATPase domain 236
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 239
Homodimeric domain of signal transducing histidine kinase CheY-like 2214
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2217
P-loop containing nucleoside triphosphate hydrolases MOP-like 222
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 227
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 213
"Winged helix" DNA-binding domain GAF domain-like 212
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 208
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 207
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 204
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 198
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 195
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 198
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 198
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 198
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 198
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 189
Thioredoxin-like GST C-terminal domain-like 181
ISP domain Bet v1-like 173
Cytochrome c Cytochrome c 174
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 177
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1513
Thiolase-like Thiolase-like 151
Class I glutamine amidotransferase-like Homeodomain-like 141
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 141
"Winged helix" DNA-binding domain PLP-dependent transferases 141
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 133
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 131
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 133
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 124
PYP-like sensor domain (PAS domain) CheY-like 1210
Nucleotide cyclase EAL domain-like 126
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 123
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 111
P-loop containing nucleoside triphosphate hydrolases GAF domain-like 115
PYP-like sensor domain (PAS domain) Nucleotide cyclase 108
TPR-like TPR-like 108
Regulatory protein AraC Homeodomain-like 102
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 105
P-loop containing nucleoside triphosphate hydrolases Translation proteins 106
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 93
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 94
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 96
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 95
"Winged helix" DNA-binding domain Chorismate lyase-like 91
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 91
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 93
Enolase N-terminal domain-like Enolase C-terminal domain-like 91
GAF domain-like PYP-like sensor domain (PAS domain) 85
P-loop containing nucleoside triphosphate hydrolases CheY-like 84
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 84
Homeodomain-like SIS domain 83
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 81
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 84
(Trans)glycosidases Glycosyl hydrolase domain 85
Phospholipase D/nuclease Phospholipase D/nuclease 74
Trypsin-like serine proteases PDZ domain-like 74
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 74
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 71
CheY-like Homeodomain-like 74
GAF domain-like Homodimeric domain of signal transducing histidine kinase 75
RmlC-like cupins Homeodomain-like 73
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 63
PreATP-grasp domain Rudiment single hybrid motif 63
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
cAMP-binding domain-like "Winged helix" DNA-binding domain 62
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 61
GAF domain-like Homeodomain-like 63
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 62
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 63
lambda repressor-like DNA-binding domains RmlC-like cupins 61
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 63
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 63
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 61
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 64
CheY-like CheY-like 64
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 63
Nucleotide-diphospho-sugar transferases RmlC-like cupins 61
PYP-like sensor domain (PAS domain) EAL domain-like 64
Triger factor/SurA peptide-binding domain-like FKBP-like 64
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 53
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
Protein kinase-like (PK-like) PYP-like sensor domain (PAS domain) 52
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 52
P-loop containing nucleoside triphosphate hydrolases TPR-like 55
Translation proteins EF-G C-terminal domain-like 53
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 52
Aspartate/glutamate racemase Aspartate/glutamate racemase 52
E set domains (Trans)glycosidases 53
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 53
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 52
Calcium ATPase, transmembrane domain M HAD-like 54
PDZ domain-like PDZ domain-like 53
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 52
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
PurM N-terminal domain-like PurM C-terminal domain-like 52
HlyD-like secretion proteins HlyD-like secretion proteins 53
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 54
Calcium ATPase, transduction domain A HAD-like 54
ParB/Sulfiredoxin KorB DNA-binding domain-like 51
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 52
Protein kinase-like (PK-like) GAF domain-like 52
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 54
Phage tail proteins gp5 N-terminal domain-like 43
Lysozyme-like beta-lactamase/transpeptidase-like 42
PYP-like sensor domain (PAS domain) Homeodomain-like 43
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 43
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 42
Cupredoxins Cytochrome c 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
C-terminal effector domain of the bipartite response regulators TPR-like 44
Aconitase iron-sulfur domain LeuD/IlvD-like 43
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 42
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 43
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 41
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 43
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 43
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 42
GAF domain-like Nucleotide cyclase 42
Pectin lyase-like Autotransporter 44
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 43
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 43
Homeodomain-like Ribonuclease H-like 42
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 42
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 44
EAL domain-like Sensory domain-like 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 42
Alpha-L RNA-binding motif Pseudouridine synthase 42
Phage tail proteins Phage tail proteins 43
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
E set domains Glycosyl hydrolase domain 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 32
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 31
ClpP/crotonase ClpP/crotonase 31
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 31
Nqo1 middle domain-like Nqo1C-terminal domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 32
GroES-like GroES-like 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 31
PLP-binding barrel Alanine racemase C-terminal domain-like 32
SAM/Pointed domain Nucleotide cyclase 33
SAM/Pointed domain P-loop containing nucleoside triphosphate hydrolases 33
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 32
Clc chloride channel CBS-domain pair 31
Single hybrid motif CoA-dependent acyltransferases 32
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
ACT-like ACT-like 33
GroEL-intermediate domain like GroEL apical domain-like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 31
cAMP-binding domain-like FAD/NAD(P)-binding domain 31
Nucleotidyltransferase ACT-like 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 32
Folate-binding domain Aminomethyltransferase beta-barrel domain 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
2Fe-2S ferredoxin-like alpha-helical ferredoxin 31
Aldolase post-HMGL domain-like 32
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 31
Sensory domain-like Nucleotide cyclase 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 32
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
gp5 N-terminal domain-like Phage fibre proteins 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 31
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
HD-domain/PDEase-like ACT-like 32
Phage tail proteins Phage fibre proteins 32
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 31
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 32
CBS-domain pair FAD-binding/transporter-associated domain-like 32
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 32
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 33
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
GroEL equatorial domain-like GroEL-intermediate domain like 31
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 33
Nucleotidyltransferase HD-domain/PDEase-like 32
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 31
Nucleic acid-binding proteins RuvA domain 2-like 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 32
GroEL equatorial domain-like GroEL apical domain-like 31
Nucleotide cyclase TPR-like 33
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 32
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 21
PreATP-grasp domain Single hybrid motif 22
Formyltransferase FMT C-terminal domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nucleotidyltransferase TGS-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 21
TGS-like ACT-like 21
Flavoproteins Riboflavin synthase domain-like 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
Globin-like Riboflavin synthase domain-like 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Ribonuclease H-like DNA/RNA polymerases 22
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 21
SAM/Pointed domain TPR-like 22
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Cyclophilin-like PH0987 N-terminal domain-like 22
Duplicated hybrid motif HPr-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 22
MalF N-terminal region-like MetI-like 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 22
FMN-binding split barrel UbiD C-terminal domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
ACT-like Formyltransferase 21
EAL domain-like HD-domain/PDEase-like 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 21
Rudiment single hybrid motif Single hybrid motif 22
GAF domain-like CheY-like 22
MOP-like MOP-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
Translation proteins Ribosomal protein S5 domain 2-like 21
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 21
HD-domain/PDEase-like TGS-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 21
Nucleotide-diphospho-sugar transferases PilZ domain-like 21
Glucose permease domain IIB Glucose permease domain IIB 21
FAD/NAD(P)-binding domain Folate-binding domain 22
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 22
L30e-like alpha/beta knot 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
HMA, heavy metal-associated domain HAD-like 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Heme-dependent peroxidases Heme-dependent peroxidases 21
Pectin lyase-like Pectin lyase-like 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 22
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
H-NS histone-like proteins H-NS histone-like proteins 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Bacterial muramidases Lysozyme-like 21
PrpR receptor domain-like Homeodomain-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
alpha/beta-Hydrolases alpha/beta-Hydrolases 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 22
HPr-like Phosphohistidine domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Methylesterase CheB, C-terminal domain CheY-like 22
LysM domain Duplicated hybrid motif 22
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 21
Homeodomain-like Probable bacterial effector-binding domain 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
(Trans)glycosidases Galactose-binding domain-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Galactose-binding domain-like Galactose-binding domain-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Adhesin YadA, collagen-binding domain Pili subunits 22
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 21
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 21
Nucleotide-binding domain Nucleotide-binding domain 21
TrkA C-terminal domain-like TrkA C-terminal domain-like 21
alpha-helical ferredoxin Nucleotide-binding domain 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 21
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 21
Cupredoxins Cupredoxins 22
MoeA N-terminal region -like MoeA C-terminal domain-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
HPr-like Phosphoenolpyruvate/pyruvate domain 21
Duplicated hybrid motif Phosphohistidine domain 21
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 22
Thioredoxin-like Thioredoxin-like 22
Thioredoxin-like FAD/NAD(P)-binding domain 22
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Ribonuclease H-like RuvA domain 2-like 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
cAMP-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
FMN-dependent nitroreductase-like FMN-dependent nitroreductase-like 11
FAD-linked reductases, C-terminal domain Folate-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Putative DNA-binding domain Citrate synthase 11
PreATP-grasp domain PreATP-grasp domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
PurS-like FGAM synthase PurL, linker domain 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Phosphoenolpyruvate/pyruvate domain Nucleotide-diphospho-sugar transferases 11
Nucleic acid-binding proteins GAD domain-like 11
CheC-like Surface presentation of antigens (SPOA) 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Riboflavin synthase domain-like Cytochrome P450 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
S-adenosyl-L-methionine-dependent methyltransferases GAF domain-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Riboflavin synthase domain-like GntR ligand-binding domain-like 11
"Winged helix" DNA-binding domain MOP-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
PurS-like PurM C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like Ribonuclease H-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
lambda repressor-like DNA-binding domains lambda repressor-like DNA-binding domains 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Cyclophilin-like Cyclophilin-like 11
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
FliG FliG 11
MFS general substrate transporter MFS general substrate transporter 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Family A G protein-coupled receptor-like FAD-binding/transporter-associated domain-like 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
WD40 repeat-like WD40 repeat-like 11
Tetrapyrrole methylase CobE/GbiG C-terminal domain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
CarD-like TRCF domain-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Ferritin-like HAD-like 11
Ferredoxin reductase-like, C-terminal NADP-linked domain Cytochrome P450 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
2Fe-2S ferredoxin-like ADC-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Putative DNA-binding domain Translation proteins 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
YrdC/RibB RibA-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Translation proteins "Winged helix" DNA-binding domain 11
Nqo5-like HydB/Nqo4-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
CheY-like Nucleotide cyclase 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
2Fe-2S ferredoxin-like Cytochrome P450 11
Tex N-terminal region-like Ribonuclease H-like 11
Succinyl-CoA synthetase domains Citrate synthase 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type I DNA topoisomerase 11
Class II aaRS and biotin synthetases Translation proteins 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
ISP domain FAD/NAD(P)-binding domain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
cAMP-binding domain-like cAMP-binding domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Sialidases Sialidases 11
Molybdenum cofactor-binding domain Bet v1-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Nucleic acid-binding proteins PheT/TilS domain 11
Hsp33 domain HSP33 redox switch-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
ABC transporter transmembrane region CheY-like 11
Cytochrome c oxidase subunit II-like, transmembrane region OmpA-like 11
PheT/TilS domain Putative DNA-binding domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
TGS-like Class II aaRS and biotin synthetases 11
HprK N-terminal domain-like PEP carboxykinase-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
MetI-like MetI-like 11
Chorismate mutase II ACT-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
TPR-like alpha/beta-Hydrolases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Pseudouridine synthase PUA domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain GAF domain-like 11
PapD-like Periplasmic chaperone C-domain 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Phase 1 flagellin Phase 1 flagellin 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PIN domain-like DNA/RNA polymerases 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Protease propeptides/inhibitors Subtilisin-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
AhpD-like AhpD-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
SpoIIaa-like cAMP-binding domain-like 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Ribonuclease H-like GIY-YIG endonuclease 11
RNase III domain-like dsRNA-binding domain-like 11
TGS-like Class II aaRS ABD-related 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
Actin-like ATPase domain SIS domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
RuvA domain 2-like BRCT domain 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Cytochrome c OmpA-like 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
S-adenosyl-L-methionine-dependent methyltransferases EreA/ChaN-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
ClpP/crotonase NfeD domain-like 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
UROD/MetE-like UROD/MetE-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
PurS-like PurM N-terminal domain-like 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Ribbon-helix-helix ALDH-like 11
PUA domain-like alpha/beta knot 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
(Trans)glycosidases (Trans)glycosidases 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Thioredoxin-like TPR-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
DNA clamp DNA clamp 11
Zinc beta-ribbon DNA primase core 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
PLP-dependent transferases PLP-dependent transferases 11
ABC transporter transmembrane region ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Periplasmic binding protein-like II Cytochrome c 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Thioredoxin-like Nqo1C-terminal domain-like 11
2Fe-2S ferredoxin-like GntR ligand-binding domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
alpha/beta-Hydrolases NTF2-like 11
Carbamate kinase-like PUA domain-like 11
Nucleic acid-binding proteins Prim-pol domain 11
TGS-like ThrRS/AlaRS common domain 11
ACP-like ACP-like 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
E set domains E set domains 11
Acetyl-CoA synthetase-like ACP-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Single hybrid motif alpha/beta-Hydrolases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Carbamate kinase-like ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
PPK N-terminal domain-like PHP14-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
GIY-YIG endonuclease RuvA domain 2-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
ADC-like Riboflavin synthase domain-like 11
FKBP-like FKBP-like 11
FAD/NAD(P)-binding domain alpha/beta-Hydrolases 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
CO dehydrogenase molybdoprotein N-domain-like Bet v1-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Thioredoxin-like Nqo1 middle domain-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Voltage-gated potassium channels E set domains 11
YajQ-like YajQ-like 11
cAMP-binding domain-like ABC transporter transmembrane region 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Translation proteins Translation proteins 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
CheY-binding domain of CheA CheW-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Class I glutamine amidotransferase-like Glycosyl hydrolase domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
DNA-glycosylase Nudix 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
DAK1/DegV-like DhaL-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
3-carboxy-cis,cis-mucoante lactonizing enzyme NHL repeat 11
Trigger factor ribosome-binding domain FKBP-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
FAD-linked oxidases, C-terminal domain FAD-linked oxidases, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PurS-like Class I glutamine amidotransferase-like 11
FAD-linked oxidoreductase ALDH-like 11
Actin-like ATPase domain Homeodomain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
ADC-like Flavoproteins 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
GntR ligand-binding domain-like Cytochrome P450 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
LysM domain LysM domain 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
PRC-barrel domain PRC-barrel domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
L domain-like Protein kinase-like (PK-like) 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Lysozyme-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Six-hairpin glycosidases MurD-like peptide ligases, catalytic domain 11
Sensory domain-like HAMP domain-like 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Toll/Interleukin receptor TIR domain WD40 repeat-like 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
4Fe-4S ferredoxins ADC-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Pili subunits GspK insert domain-like 11
Ricin B-like lectins Galactose oxidase, central domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Six-hairpin glycosidases MurD-like peptide ligases, peptide-binding domain 11
Rudiment single hybrid motif Cyclophilin-like 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Translation proteins ThrRS/AlaRS common domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Prim-pol domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Resolvase-like Homeodomain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Methylesterase CheB, C-terminal domain GAF domain-like 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
GAF domain-like EAL domain-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
FAD-linked reductases, C-terminal domain Thioredoxin-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 11
PreATP-grasp domain Methylglyoxal synthase-like 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
TATA-box binding protein-like DNA-glycosylase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Periplasmic binding protein-like II CheY-like 11
Ricin B-like lectins E set domains 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
PDZ domain-like ClpP/crotonase 11
Macro domain-like Zn-dependent exopeptidases 11
Periplasmic binding protein-like I Homeodomain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
FAD-linked reductases, C-terminal domain Aminomethyltransferase beta-barrel domain 11
Family A G protein-coupled receptor-like CBS-domain pair 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
YjeF N-terminal domain-like Ribokinase-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Caspase-like C-type lectin-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
CheW-like CheY-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
SMAD/FHA domain SMAD/FHA domain 11
C-terminal effector domain of the bipartite response regulators Nucleotide cyclase 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II ACT-like 11
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
PH0987 N-terminal domain-like Single hybrid motif 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Ribosomal protein L6 Ribosomal protein L6 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
Lysozyme-like LysM domain 11
RuvA domain 2-like RuvA domain 2-like 11
PHP14-like Phospholipase D/nuclease 11
Cupredoxins OmpA-like 11
Galactose oxidase, central domain E set domains 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
Ferredoxin reductase-like, C-terminal NADP-linked domain GntR ligand-binding domain-like 11
TPR-like Nucleotide-diphospho-sugar transferases 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
ACP-like CoA-dependent acyltransferases 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
NAD(P)-binding Rossmann-fold domains Citrate synthase 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
HAMP domain-like Nucleotide cyclase 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
Translation proteins PRC-barrel domain 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
Single hybrid motif FAD/NAD(P)-binding domain 11
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 11
Cyclophilin-like Single hybrid motif 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Single hybrid motif Single hybrid motif 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
RmlC-like cupins RmlC-like cupins 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
PreATP-grasp domain Cyclophilin-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Oxidoreductase molybdopterin-binding domain E set domains 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Flavoproteins 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11

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