SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Domain combination pairs in Starkeya novella DSM 506

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

664 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 471
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 464
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3616
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3212
P-loop containing nucleoside triphosphate hydrolases MOP-like 311
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 227
Homeodomain-like Homeodomain-like 193
CheY-like C-terminal effector domain of the bipartite response regulators 184
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 175
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 162
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 165
GroES-like NAD(P)-binding Rossmann-fold domains 163
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 153
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1510
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 149
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 134
Actin-like ATPase domain Actin-like ATPase domain 124
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 114
Thioredoxin-like GST C-terminal domain-like 111
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 102
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 103
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 109
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 101
PYP-like sensor domain (PAS domain) Nucleotide cyclase 107
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 105
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 95
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 95
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Enolase N-terminal domain-like Enolase C-terminal domain-like 91
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 95
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 95
Nucleotide cyclase EAL domain-like 96
Homodimeric domain of signal transducing histidine kinase CheY-like 98
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 81
P-loop containing nucleoside triphosphate hydrolases Translation proteins 87
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 86
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 83
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 85
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 83
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 83
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 72
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 73
Calcium ATPase, transduction domain A HAD-like 76
Thiolase-like Thiolase-like 71
Calcium ATPase, transmembrane domain M HAD-like 76
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 71
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 76
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 74
PreATP-grasp domain Rudiment single hybrid motif 73
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 73
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 63
CheY-like PYP-like sensor domain (PAS domain) 65
MetI-like MetI-like 61
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 61
Class I glutamine amidotransferase-like Homeodomain-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Cytochrome c Cytochrome c 54
Lysozyme-like PGBD-like 52
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 53
HlyD-like secretion proteins HlyD-like secretion proteins 53
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 51
TPR-like TPR-like 55
"Winged helix" DNA-binding domain Chorismate lyase-like 52
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 51
(Trans)glycosidases Glycosyl hydrolase domain 54
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
PurM N-terminal domain-like PurM C-terminal domain-like 52
PYP-like sensor domain (PAS domain) EAL domain-like 54
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 53
E set domains (Trans)glycosidases 44
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 41
Lysozyme-like beta-lactamase/transpeptidase-like 43
CheY-like P-loop containing nucleoside triphosphate hydrolases 41
Trypsin-like serine proteases PDZ domain-like 42
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 42
CheY-like Homeodomain-like 41
"Winged helix" DNA-binding domain GAF domain-like 42
C-terminal effector domain of the bipartite response regulators TPR-like 44
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 42
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 44
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 42
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Alpha-L RNA-binding motif Pseudouridine synthase 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 32
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
Pectin lyase-like Autotransporter 32
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 31
GroEL equatorial domain-like GroEL apical domain-like 31
FKBP-like Triger factor/SurA peptide-binding domain-like 32
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
PDZ domain-like PDZ domain-like 31
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 33
GroEL-intermediate domain like GroEL apical domain-like 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 31
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 32
C-terminal effector domain of the bipartite response regulators P-loop containing nucleoside triphosphate hydrolases 33
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 32
GAF domain-like EAL domain-like 32
E set domains Glycosyl hydrolase domain 33
GAF domain-like Nucleotide cyclase 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Phospholipase D/nuclease Phospholipase D/nuclease 33
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
Cupredoxins Cupredoxins 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
GroEL equatorial domain-like GroEL-intermediate domain like 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ACT-like ACT-like 33
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 33
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 31
CBS-domain pair FAD-binding/transporter-associated domain-like 31
lambda repressor-like DNA-binding domains RmlC-like cupins 31
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 32
PLP-binding barrel Alanine racemase C-terminal domain-like 31
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Translation proteins EF-G C-terminal domain-like 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 32
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 32
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
GAF domain-like PYP-like sensor domain (PAS domain) 32
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Galactose mutarotase-like Six-hairpin glycosidases 22
Oxidoreductase molybdopterin-binding domain E set domains 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
Rudiment single hybrid motif Single hybrid motif 22
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
TPR-like S-adenosyl-L-methionine-dependent methyltransferases 22
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 21
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
CheY-like CheY-like 22
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Aconitase iron-sulfur domain LeuD/IlvD-like 21
P-loop containing nucleoside triphosphate hydrolases Protein kinase-like (PK-like) 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
ClpP/crotonase ClpP/crotonase 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Translation proteins ThrRS/AlaRS common domain 22
Resolvase-like Homeodomain-like 21
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
PUA domain-like Ribosomal protein S5 domain 2-like 21
Single hybrid motif CoA-dependent acyltransferases 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 22
tRNA-binding arm Class II aaRS and biotin synthetases 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
CheY-like EAL domain-like 22
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
P-loop containing nucleoside triphosphate hydrolases TrpR-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 21
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 22
MgtE N-terminal domain-like MgtE membrane domain-like 21
MgtE N-terminal domain-like CBS-domain pair 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
PH0987 N-terminal domain-like Cyclophilin-like 21
Nucleotidyltransferase ACT-like 22
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
HAMP domain-like Nucleotide cyclase 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 21
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 22
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
L30e-like alpha/beta knot 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
FAD/NAD(P)-binding domain Folate-binding domain 21
HAMP domain-like EAL domain-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
PreATP-grasp domain Single hybrid motif 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 22
Nucleic acid-binding proteins RuvA domain 2-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
"Winged helix" DNA-binding domain PLP-dependent transferases 21
Homeodomain-like Acetamidase/Formamidase-like 21
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
CheY-like Histidine-containing phosphotransfer domain, HPT domain 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 22
CBS-domain pair MgtE membrane domain-like 21
FMN-binding split barrel UbiD C-terminal domain-like 22
HMA, heavy metal-associated domain HAD-like 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 22
DNA methylase specificity domain DNA methylase specificity domain 22
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
TGS-like Class II aaRS and biotin synthetases 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
6-phosphogluconate dehydrogenase C-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Acetyl-CoA synthetase-like ACP-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Ferredoxin reductase-like, C-terminal NADP-linked domain PYP-like sensor domain (PAS domain) 11
Nucleotidylyl transferase Riboflavin kinase-like 11
TGS-like ACT-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Pectin lyase-like Pectin lyase-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Resolvase-like KorB DNA-binding domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Tetracyclin repressor-like, C-terminal domain ALDH-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Translation proteins PRC-barrel domain 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
PGBD-like PGBD-like 11
GAF domain-like Phosphohistidine domain 11
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Adhesin YadA, collagen-binding domain Pili subunits 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
ACT-like Formyltransferase 11
Thioredoxin-like Acyl-CoA N-acyltransferases (Nat) 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PIN domain-like Ribonuclease H-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
DNA clamp DNA clamp 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
(Phosphotyrosine protein) phosphatases II FAD/NAD(P)-binding domain 11
UraD-Like Transthyretin (synonym: prealbumin) 11
Rudiment single hybrid motif Aldolase 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
PRTase-like PRTase-like 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Bet v1-like Bet v1-like 11
Sensory domain-like GAF domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
PDZ domain-like ClpP/crotonase 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
HRDC-like HRDC-like 11
Galactose mutarotase-like E set domains 11
Carbamate kinase-like PUA domain-like 11
Cupredoxins Cytochrome c 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
Pentapeptide repeat-like Pentapeptide repeat-like 11
4Fe-4S ferredoxins ADC-like 11
MetI-like P-loop containing nucleoside triphosphate hydrolases 11
Creatinase/prolidase N-terminal domain Creatinase/prolidase N-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
NAD(P)-binding Rossmann-fold domains Thioesterase/thiol ester dehydrase-isomerase 11
Homeodomain-like ALDH-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
CheY-like GAF domain-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
2Fe-2S ferredoxin-like Molybdenum cofactor-binding domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Nudix "Winged helix" DNA-binding domain 11
Tetrahydrobiopterin biosynthesis enzymes-like Tetrahydrobiopterin biosynthesis enzymes-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
TGS-like Class II aaRS ABD-related 11
Nucleic acid-binding proteins GAD domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Aldolase Single hybrid motif 11
Formyltransferase FMT C-terminal domain-like 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleic acid-binding proteins BRCT domain 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
YlxR-like L30e-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
ParB/Sulfiredoxin KorB DNA-binding domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
HD-domain/PDEase-like HD-domain/PDEase-like 11
Siroheme synthase middle domains-like Tetrapyrrole methylase 11
Clc chloride channel CBS-domain pair 11
Translation proteins Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
PreATP-grasp domain post-HMGL domain-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Serine metabolism enzymes domain ACT-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
CO dehydrogenase ISP C-domain like Molybdenum cofactor-binding domain 11
Voltage-gated potassium channels cAMP-binding domain-like 11
Hsp33 domain HSP33 redox switch-like 11
HAMP domain-like MFS general substrate transporter 11
PPK N-terminal domain-like PHP14-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
2Fe-2S ferredoxin-like CO dehydrogenase molybdoprotein N-domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Radical SAM enzymes Radical SAM enzymes 11
GAF domain-like Homeodomain-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PHP domain-like AF1531-like 11
dUTPase-like dUTPase-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
alpha/beta-Hydrolases alpha/beta-Hydrolases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Bacterial muramidases Lysozyme-like 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
"Winged helix" DNA-binding domain Phospholipase D/nuclease 11
SH3-domain Cysteine proteinases 11
CheY-like PP2C-like 11
PheT/TilS domain Putative DNA-binding domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Globin-like Riboflavin synthase domain-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Sensory domain-like HD-domain/PDEase-like 11
Ribonuclease H-like HRDC-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
CO dehydrogenase ISP C-domain like CO dehydrogenase molybdoprotein N-domain-like 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
beta-Roll beta-Roll 11
GIY-YIG endonuclease RuvA domain 2-like 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Glutathione synthetase ATP-binding domain-like NAD(P)-binding Rossmann-fold domains 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
GroES-like GroES-like 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
MalF N-terminal region-like MetI-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
CoA-dependent acyltransferases alpha/beta-Hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
PIN domain-like DNA/RNA polymerases 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
GAF domain-like HD-domain/PDEase-like 11
DNA-glycosylase Nudix 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
2Fe-2S ferredoxin-like Bet v1-like 11
Rudiment single hybrid motif post-HMGL domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Flavoproteins Riboflavin synthase domain-like 11
Thiolase-like GroES-like 11
(Trans)glycosidases (Trans)glycosidases 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
GroES-like ACP-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
Periplasmic binding protein-like II ACT-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
PHP14-like Phospholipase D/nuclease 11
Thioredoxin-like TPR-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Macro domain-like Zn-dependent exopeptidases 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
4Fe-4S ferredoxins Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Carbamate kinase-like ACT-like 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
PGBD-like TerB-like 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
Trigger factor ribosome-binding domain FKBP-like 11
Thiolase-like FabD/lysophospholipase-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Zinc beta-ribbon DNA primase core 11
4Fe-4S ferredoxins ARM repeat 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
Apolipoprotein A-I Apolipoprotein A-I 11
Single hybrid motif TK C-terminal domain-like 11
ISP domain Bet v1-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
LysM domain Duplicated hybrid motif 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Methionine synthase domain Methionine synthase activation domain-like 11
EspE N-terminal domain-like Nucleotide-diphospho-sugar transferases 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Poly A polymerase C-terminal region-like ACT-like 11
2Fe-2S ferredoxin-like ADC-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
FabD/lysophospholipase-like GroES-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Class II aaRS and biotin synthetases Translation proteins 11
Translation proteins "Winged helix" DNA-binding domain 11
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Ribosomal protein L6 Ribosomal protein L6 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
TPR-like Terpenoid cyclases/Protein prenyltransferases 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
RuvA domain 2-like BRCT domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
Aldolase post-HMGL domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
CheY-like Nucleotide cyclase 11
alpha-helical ferredoxin Nucleotide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
CarD-like TRCF domain-like 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
HD-domain/PDEase-like TGS-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Ferritin-like HAD-like 11
TGS-like ThrRS/AlaRS common domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
CheW-like CheY-like 11
CoA-dependent acyltransferases ACP-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Galactose mutarotase-like Galactose mutarotase-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase GroES-like 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
DAK1/DegV-like DhaL-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
E set domains E set domains 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Riboflavin synthase domain-like PYP-like sensor domain (PAS domain) 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
MFS general substrate transporter MFS general substrate transporter 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
PUA domain-like alpha/beta knot 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
HD-domain/PDEase-like ACT-like 11
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 11
post-HMGL domain-like Single hybrid motif 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Thiolase-like ACP-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
PreATP-grasp domain Aldolase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
YebC-like PFL-like glycyl radical enzymes 11
"Winged helix" DNA-binding domain Phosphotyrosine protein phosphatases I 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
RNase III domain-like dsRNA-binding domain-like 11
beta-Barrel protease inhibitors beta-Barrel protease inhibitors 11
Putative DNA-binding domain GAF domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
YrdC/RibB RibA-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotide-binding domain Nucleotide-binding domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
Acetyl-CoA synthetase-like Protein kinase-like (PK-like) 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Nucleotidyltransferase TGS-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Ribonuclease H-like DNA/RNA polymerases 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Thioredoxin-like Six-hairpin glycosidases 11
Ribbon-helix-helix ALDH-like 11
FAD-linked oxidoreductase ALDH-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Nucleic acid-binding proteins PheT/TilS domain 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
PK beta-barrel domain-like PK C-terminal domain-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
CoA-dependent acyltransferases CoA-dependent acyltransferases 11
ACP-like alpha/beta-Hydrolases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Nucleotidyltransferase Nucleotidyltransferase 11
Class II aaRS and biotin synthetases GAD domain-like 11
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Urease, gamma-subunit Urease, beta-subunit 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains ACP-like 11
FabD/lysophospholipase-like ACP-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]