SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.


Domain combination pairs in Geobacillus sp. JF8

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


Add or remove domain pairs

The links below permit the addition or removal of specific sets of domain combination pairs.


Jump to [ Top of page · Add/remove domain pairs · Domain combination pairs ]

Add or remove genomes

Change the list of genome two-letter codes in the 'Include genomes' box to include domain-pairs from those genomes.
Change the list of genomes in the 'Exclude genomes' box to exclude domain-pairs from those genomes.
List of all two-letter genome codes.

Add or remove genomes:
Include genomes:
Exclude genomes:


Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes ]

Domain combination pairs

635 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2512
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 215
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 204
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 172
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 158
Actin-like ATPase domain Actin-like ATPase domain 153
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 112
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 104
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 96
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 92
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 91
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 92
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 91
Thiolase-like Thiolase-like 81
CheY-like C-terminal effector domain of the bipartite response regulators 81
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 85
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 81
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 74
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 75
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 72
(Trans)glycosidases Glycosyl hydrolase domain 74
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 63
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 64
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 63
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 61
GroES-like NAD(P)-binding Rossmann-fold domains 62
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 51
LysM domain LysM domain 53
P-loop containing nucleoside triphosphate hydrolases Translation proteins 54
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 51
PreATP-grasp domain Rudiment single hybrid motif 52
"Winged helix" DNA-binding domain GAF domain-like 51
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 52
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 52
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 51
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 41
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 42
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 44
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
LysM domain (Trans)glycosidases 42
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 43
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 41
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 43
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 41
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 41
Lysozyme-like beta-lactamase/transpeptidase-like 43
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 41
PYP-like sensor domain (PAS domain) Nucleotide cyclase 42
Single hybrid motif CoA-dependent acyltransferases 41
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 44
Aldolase post-HMGL domain-like 42
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 43
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
HAMP domain-like PYP-like sensor domain (PAS domain) 32
PYP-like sensor domain (PAS domain) PP2C-like 32
ACT-like ACT-like 32
RuvA domain 2-like Nucleic acid-binding proteins 33
"Winged helix" DNA-binding domain Chorismate lyase-like 31
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
PYP-like sensor domain (PAS domain) Homeodomain-like 33
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Alpha-L RNA-binding motif Pseudouridine synthase 31
CheY-like Homeodomain-like 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
Nucleotide cyclase EAL domain-like 31
ClpP/crotonase ClpP/crotonase 31
PTS system IIB component-like Phoshotransferase/anion transport protein 33
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
DNA methylase specificity domain DNA methylase specificity domain 31
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
Calcium ATPase, transduction domain A HAD-like 33
NAD(P)-binding Rossmann-fold domains ACT-like 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
Trypsin-like serine proteases PDZ domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Translation proteins EF-G C-terminal domain-like 32
Sensory domain-like PYP-like sensor domain (PAS domain) 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 31
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
TPR-like TPR-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
HAD-like Calcium ATPase, transmembrane domain M 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 31
PYP-like sensor domain (PAS domain) EAL domain-like 31
Homeodomain-like Homeodomain-like 33
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
E set domains (Trans)glycosidases 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
Aconitase iron-sulfur domain LeuD/IlvD-like 31
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Serine metabolism enzymes domain ACT-like 22
Nucleic acid-binding proteins Ribonuclease H-like 22
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
Cupredoxins Cupredoxins 22
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
PurM N-terminal domain-like PurM C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 22
P-loop containing nucleoside triphosphate hydrolases ACT-like 21
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 22
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 22
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 22
E set domains Glycosyl hydrolase domain 22
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
Sensory domain-like Sporulation response regulatory protein Spo0B 21
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 22
Rhodanese/Cell cycle control phosphatase Metallo-hydrolase/oxidoreductase 21
CheC-like Surface presentation of antigens (SPOA) 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
SacY-like RNA-binding domain PTS-regulatory domain, PRD 21
PTS-regulatory domain, PRD PTS system IIB component-like 22
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 22
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 22
ISP domain Bet v1-like 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 22
"Winged helix" DNA-binding domain CBS-domain pair 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
PRC-barrel domain PRC-barrel domain 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
HMA, heavy metal-associated domain HAD-like 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 21
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
Homeodomain-like SIS domain 21
P-loop containing nucleoside triphosphate hydrolases MOP-like 21
Phospholipase D/nuclease Phospholipase D/nuclease 22
L30e-like alpha/beta knot 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 22
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 22
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 21
"Winged helix" DNA-binding domain PTS system IIB component-like 22
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
GAF domain-like GAF domain-like 22
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
Carbamate kinase-like ACT-like 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 22
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Triger factor/SurA peptide-binding domain-like FKBP-like 22
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 21
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
PreATP-grasp domain PreATP-grasp domain 22
Phosphoenolpyruvate/pyruvate domain Phosphohistidine domain 22
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Homodimeric domain of signal transducing histidine kinase CheW-like 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
beta-lactamase/transpeptidase-like Fibronectin type III 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 11
FAD/NAD(P)-binding domain ISP domain 11
PilZ domain-like PilZ domain-like 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
YrdC/RibB RibA-like 11
CheY-like Methylesterase CheB, C-terminal domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Translation proteins Translation proteins 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Nucleotide cyclase DHH phosphoesterases 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
PUA domain-like Nucleotidylyl transferase 11
SirA-like Rhodanese/Cell cycle control phosphatase 11
lambda repressor-like DNA-binding domains TPR-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
Glycosyl hydrolase domain Fibronectin type III 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
(Trans)glycosidases Starch-binding domain-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Glycosyl hydrolase domain Starch-binding domain-like 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Eukaryotic type KH-domain (KH-domain type I) P-loop containing nucleoside triphosphate hydrolases 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
NAD(P)-binding Rossmann-fold domains P-loop containing nucleoside triphosphate hydrolases 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
LysM domain L,D-transpeptidase catalytic domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
"Winged helix" DNA-binding domain DnaD domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
vWA-like Invasin/intimin cell-adhesion fragments 11
PGBD-like Cysteine proteinases 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
DNA primase core N-terminal domain of DnaB helicase 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PHP domain-like RuvA domain 2-like 11
post-HMGL domain-like Single hybrid motif 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
PLP-dependent transferases PLP-dependent transferases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Trypsin-like serine proteases YVTN repeat-like/Quinoprotein amine dehydrogenase 11
NAD(P)-binding Rossmann-fold domains PYP-like sensor domain (PAS domain) 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
CheY-like "Winged helix" DNA-binding domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
PDZ domain-like ClpP/crotonase 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
EAL domain-like Sensory domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
DNA-glycosylase Nudix 11
Zinc beta-ribbon N-terminal domain of DnaB helicase 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Tex N-terminal region-like RuvA domain 2-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
ClpP/crotonase PGBD-like 11
PYP-like sensor domain (PAS domain) CheY-like 11
Flavoproteins Riboflavin synthase domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
S-adenosyl-L-methionine-dependent methyltransferases DNA methylase specificity domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
TGS-like Class II aaRS ABD-related 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
Cupredoxins Cytochrome c 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
CheY-like Nucleotide cyclase 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Nitrous oxide reductase, N-terminal domain Cupredoxins 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
DNA clamp DNA clamp 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Galactose-binding domain-like (Trans)glycosidases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Macro domain-like Zn-dependent exopeptidases 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Translation proteins Ribosomal protein S5 domain 2-like 11
MFS general substrate transporter MFS general substrate transporter 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PIN domain-like DNA/RNA polymerases 11
DNA repair protein MutS, domain III SMR domain-like 11
Transposase IS200-like Transposase IS200-like 11
CarD-like TRCF domain-like 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Bacterial hemolysins Tropomyosin 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
CBS-domain pair ACT-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
Zinc beta-ribbon DNA primase core 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 11
Globin-like Riboflavin synthase domain-like 11
GAF domain-like Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
TGS-like ThrRS/AlaRS common domain 11
"Winged helix" DNA-binding domain PRTase-like 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Smc hinge domain Tropomyosin 11
MalF N-terminal region-like MetI-like 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
RuvA domain 2-like JAB1/MPN domain 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
PH0987 N-terminal domain-like Cyclophilin-like 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
ACT-like Formyltransferase 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Rudiment single hybrid motif Aldolase 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
PreATP-grasp domain Single hybrid motif 11
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
FliG FliG 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
PUA domain-like alpha/beta knot 11
Sensory domain-like HAMP domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nucleotidyltransferase TGS-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Tex N-terminal region-like Ribonuclease H-like 11
PreATP-grasp domain Aldolase 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
RuvA domain 2-like BRCT domain 11
LysM domain Cysteine proteinases 11
HD-domain/PDEase-like TGS-like 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
CheY-binding domain of CheA CheW-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Trigger factor ribosome-binding domain FKBP-like 11
Fibronectin type III Starch-binding domain-like 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
2Fe-2S ferredoxin-like ADC-like 11
Prefoldin Duplicated hybrid motif 11
Hsp33 domain HSP33 redox switch-like 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
4Fe-4S ferredoxins ARM repeat 11
DeoB insert domain-like Alkaline phosphatase-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Nucleic acid-binding proteins BRCT domain 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
Purple acid phosphatase, N-terminal domain Metallo-dependent phosphatases 11
TGS-like ACT-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
GIY-YIG endonuclease RuvA domain 2-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Periplasmic binding protein-like II ACT-like 11
Translation proteins ThrRS/AlaRS common domain 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
YajQ-like YajQ-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
Tetrapyrrole methylase Nitrite and sulphite reductase 4Fe-4S domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Ribonuclease H-like AF1531-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
PreATP-grasp domain post-HMGL domain-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
YjeF N-terminal domain-like Ribokinase-like 11
Lysozyme-like Fibronectin type III 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
PK C-terminal domain-like Phosphohistidine domain 11
(Trans)glycosidases Fibronectin type III 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
Nucleotidyltransferase ACT-like 11
Ribonuclease H-like RuvA domain 2-like 11
PK beta-barrel domain-like Phosphohistidine domain 11
Cystatin/monellin Cystatin/monellin 11
GroES-like GroES-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
PDZ domain-like PGBD-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Nucleotidyltransferase PHP domain-like 11
4Fe-4S ferredoxins ADC-like 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HprK N-terminal domain-like CBS-domain pair 11
(Trans)glycosidases Cyclophilin-like 11
Nucleotide cyclase HD-domain/PDEase-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
Metalloproteases ("zincins"), catalytic domain Concanavalin A-like lectins/glucanases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
CheY-like CheY-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
CBS-domain pair Homeodomain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Rudiment single hybrid motif post-HMGL domain-like 11
Hypothetical protein SAV1430 ARM repeat 11
Nucleic acid-binding proteins AF1531-like 11
RuvA domain 2-like RuvA domain 2-like 11
NAD(P)-binding Rossmann-fold domains Homeodomain-like 11
Carbamate kinase-like PUA domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Ribosomal protein L6 Ribosomal protein L6 11
Rudiment single hybrid motif Single hybrid motif 11
GroEL equatorial domain-like GroEL apical domain-like 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
S-adenosyl-L-methionine-dependent methyltransferases NAD(P)-binding Rossmann-fold domains 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like Ribonuclease H-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
RNase III domain-like dsRNA-binding domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Glucose permease domain IIB Duplicated hybrid motif 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
vWA-like vWA-like 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Homocysteine S-methyltransferase Methionine synthase domain 11
E set domains Starch-binding domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Class II aaRS and biotin synthetases GAD domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Gamma-glutamyl cyclotransferase-like Gamma-glutamyl cyclotransferase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
PGBD-like PGBD-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Nucleic acid-binding proteins GAD domain-like 11
S-adenosylmethionine decarboxylase S-adenosyl-L-methionine-dependent methyltransferases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Translation proteins PRC-barrel domain 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
Methionine synthase domain Methionine synthase activation domain-like 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
GAF domain-like Homeodomain-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Homodimeric domain of signal transducing histidine kinase CheY-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
HD-domain/PDEase-like ACT-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Aldolase Single hybrid motif 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Class II aaRS and biotin synthetases Translation proteins 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
TGS-like Class II aaRS and biotin synthetases 11
TPR-like Hypothetical protein MPN330 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Nucleic acid-binding proteins PheT/TilS domain 11
Bacillus cereus metalloprotein-like Bacillus cereus metalloprotein-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
E set domains Fibronectin type III 11
HisI-like all-alpha NTP pyrophosphatases 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Protease propeptides/inhibitors Subtilisin-like 11
Formyltransferase FMT C-terminal domain-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Regulatory protein AraC Homeodomain-like 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Thioredoxin-like Thioredoxin-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11

Jump to [ Top of page · Add/remove domain pairs · Add/remove genomes · Domain combination pairs ]