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Domain combination pairs in Rhodomicrobium vannielii ATCC 17100

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

588 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2817
Homeodomain-like Ribonuclease H-like 281
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2411
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 137
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1312
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 134
GroES-like NAD(P)-binding Rossmann-fold domains 133
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 124
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 116
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 116
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 116
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 116
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 111
Thioredoxin-like GST C-terminal domain-like 111
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1110
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 105
CheY-like C-terminal effector domain of the bipartite response regulators 91
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 94
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 92
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 84
cAMP-binding domain-like "Winged helix" DNA-binding domain 81
Thiolase-like Thiolase-like 81
Actin-like ATPase domain Actin-like ATPase domain 85
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 87
P-loop containing nucleoside triphosphate hydrolases Translation proteins 75
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 74
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 72
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 76
PYP-like sensor domain (PAS domain) CheY-like 76
PreATP-grasp domain Rudiment single hybrid motif 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Homodimeric domain of signal transducing histidine kinase CheY-like 65
Cytochrome c Cytochrome c 64
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 62
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 62
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 65
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 52
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 51
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 53
Calcium ATPase, transduction domain A HAD-like 55
TPR-like TPR-like 53
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 53
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 53
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 51
Trypsin-like serine proteases PDZ domain-like 52
Lysozyme-like PGBD-like 42
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 41
Nucleic acid-binding proteins Nucleic acid-binding proteins 44
Translation proteins EF-G C-terminal domain-like 42
PDZ domain-like PDZ domain-like 41
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 43
Lysozyme-like beta-lactamase/transpeptidase-like 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 43
Galactose mutarotase-like E set domains 42
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 41
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 42
HAD-like Calcium ATPase, transmembrane domain M 44
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 44
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 41
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 31
PLP-binding barrel Alanine racemase C-terminal domain-like 31
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 32
Glutathione synthetase ATP-binding domain-like Single hybrid motif 31
CheY-like P-loop containing nucleoside triphosphate hydrolases 32
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 31
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
DNA methylase specificity domain DNA methylase specificity domain 31
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 31
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 33
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 31
Homodimeric domain of signal transducing histidine kinase CheW-like 33
PreATP-grasp domain Single hybrid motif 31
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 31
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 31
Nucleic acid-binding proteins RuvA domain 2-like 33
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 31
Chaperone J-domain HSP40/DnaJ peptide-binding domain 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 31
GAF domain-like Homeodomain-like 33
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
(Trans)glycosidases Glycosyl hydrolase domain 33
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Rudiment single hybrid motif Single hybrid motif 31
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 31
ClpP/crotonase ClpP/crotonase 31
PDZ domain-like ClpP/crotonase 32
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 32
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 21
MetI-like MetI-like 21
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 21
CheY-like Homeodomain-like 21
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Single hybrid motif CoA-dependent acyltransferases 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
CheY-like Methylesterase CheB, C-terminal domain 22
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
Sigma3 and sigma4 domains of RNA polymerase sigma factors CheY-like 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
PGBD-like L,D-transpeptidase catalytic domain-like 21
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
E set domains Glycosyl hydrolase domain 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 22
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
E set domains (Trans)glycosidases 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 22
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 22
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 21
Siroheme synthase middle domains-like Tetrapyrrole methylase 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 22
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 21
Toll/Interleukin receptor TIR domain C-type lectin-like 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Aconitase iron-sulfur domain LeuD/IlvD-like 22
Translation proteins Ribosomal protein S5 domain 2-like 21
PYP-like sensor domain (PAS domain) GAF domain-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
tRNA-binding arm Class II aaRS and biotin synthetases 22
Nucleotidyltransferase ACT-like 22
ACT-like ACT-like 22
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 22
Alpha-L RNA-binding motif Pseudouridine synthase 21
PUA domain-like Ribosomal protein S5 domain 2-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
Enolase N-terminal domain-like Enolase C-terminal domain-like 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
4Fe-4S ferredoxins Nitrite and sulphite reductase 4Fe-4S domain-like 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 21
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
4Fe-4S ferredoxins Radical SAM enzymes 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
Glycoside hydrolase/deacetylase Nucleotide-diphospho-sugar transferases 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases vWA-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Nucleotide-diphospho-sugar transferases IpsF-like 11
PHP14-like Phospholipase D/nuclease 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
YebC-like PFL-like glycyl radical enzymes 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
ACP-like Trimeric LpxA-like enzymes 11
HMA, heavy metal-associated domain HAD-like 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
YrdC/RibB Actin-like ATPase domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
PIN domain-like Ribonuclease H-like 11
Multiheme cytochromes TPR-like 11
PUA domain-like alpha/beta knot 11
Ribonuclease H-like Nucleic acid-binding proteins 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
"Winged helix" DNA-binding domain MOP-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PPK N-terminal domain-like PHP14-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
DNA-glycosylase Nudix 11
beta-lactamase/transpeptidase-like Sporulation related repeat 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 11
Translation proteins Translation proteins 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
ACT-like Formyltransferase 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Resolvase-like Homeodomain-like 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Hypothetical protein SAV1430 Fe-S cluster assembly (FSCA) domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HD-domain/PDEase-like TGS-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
(Trans)glycosidases (Trans)glycosidases 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Hsp33 domain HSP33 redox switch-like 11
Trimeric LpxA-like enzymes Trimeric LpxA-like enzymes 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Carbamate kinase-like ACT-like 11
Carbamate kinase-like PUA domain-like 11
Single hybrid motif Thiamin diphosphate-binding fold (THDP-binding) 11
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 11
Photosystem II reaction centre subunit H, transmembrane region PRC-barrel domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Tricorn protease N-terminal domain alpha/beta-Hydrolases 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Protein kinase-like (PK-like) Adenine nucleotide alpha hydrolases-like 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
TGS-like ThrRS/AlaRS common domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
RuvA domain 2-like JAB1/MPN domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
2Fe-2S ferredoxin-like Ferritin-like 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Ferritin-like HAD-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Nucleic acid-binding proteins PheT/TilS domain 11
Periplasmic binding protein-like II ACT-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
FliG FliG 11
Thioredoxin-like TPR-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
(Trans)glycosidases Glycoside hydrolase/deacetylase 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
GAF domain-like CheY-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Serine metabolism enzymes domain ACT-like 11
"Winged helix" DNA-binding domain GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases C-type lectin-like 11
Nucleotidylyl transferase tRNA-binding arm 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
HRDC-like HRDC-like 11
Galactose mutarotase-like (Trans)glycosidases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Nucleotide cyclase TPR-like 11
FAD-linked oxidoreductase ALDH-like 11
Ferritin-like Calcium ATPase, transduction domain A 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
MOP-like MOP-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
Trimeric LpxA-like enzymes RmlC-like cupins 11
Nqo5-like HydB/Nqo4-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
YlxR-like L30e-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
TerB-like Chaperone J-domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PH0987 N-terminal domain-like Cyclophilin-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
YjeF N-terminal domain-like Ribokinase-like 11
Formyltransferase FMT C-terminal domain-like 11
YjgF-like YjgF-like 11
Nucleotidyltransferase TGS-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
(Trans)glycosidases Nucleotide-diphospho-sugar transferases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Tropomyosin 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidyltransferase Nucleotidyltransferase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) Nucleotide cyclase 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
HD-domain/PDEase-like ACT-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
GroES-like GroES-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Ribosomal protein L6 Ribosomal protein L6 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
L30e-like alpha/beta knot 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like DNA/RNA polymerases 11
Acetyl-CoA synthetase-like ACP-like 11
E set domains E set domains 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
PHP domain-like AF1531-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Tex N-terminal region-like RuvA domain 2-like 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Zinc beta-ribbon DNA primase core 11
TGS-like Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
DNA clamp DNA clamp 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Translation proteins PRC-barrel domain 11
Nucleic acid-binding proteins BRCT domain 11
LysM domain LysM domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
PreATP-grasp domain PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Methylglyoxal synthase-like Metallo-dependent hydrolases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Putative DNA-binding domain 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
PYP-like sensor domain (PAS domain) EAL domain-like 11
HCP-like PGBD-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Ribonuclease H-like RuvA domain 2-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Bacterial muramidases Lysozyme-like 11
Ribonuclease H-like DNA/RNA polymerases 11
HCP-like HCP-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Poly A polymerase C-terminal region-like ACT-like 11
TPR-like Radical SAM enzymes 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Periplasmic binding protein-like II OmpA-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
LysM domain Duplicated hybrid motif 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Arginase/deacetylase Arginase/deacetylase 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Trigger factor ribosome-binding domain FKBP-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Nudix Macro domain-like 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Radical SAM enzymes Nitrogenase accessory factor-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
CarD-like TRCF domain-like 11
Acid proteases Glutathione synthetase ATP-binding domain-like 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins ThrRS/AlaRS common domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Actin-like ATPase domain HD-domain/PDEase-like 11
TROVE domain-like vWA-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Nucleotide cyclase EAL domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Ribbon-helix-helix ACT-like 11
dUTPase-like dUTPase-like 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
UROD/MetE-like UROD/MetE-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
lambda repressor-like DNA-binding domains lambda repressor-like DNA-binding domains 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
AhpD-like RmlC-like cupins 11
YrdC/RibB RibA-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
RuvA domain 2-like BRCT domain 11
RNase III domain-like dsRNA-binding domain-like 11
GAF domain-like GAF domain-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Transmembrane di-heme cytochromes YceI-like 11
"Winged helix" DNA-binding domain PLP-dependent transferases 11
P-loop containing nucleoside triphosphate hydrolases ARM repeat 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Tex N-terminal region-like Ribonuclease H-like 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
PYP-like sensor domain (PAS domain) Homeodomain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
TGS-like ACT-like 11
Ribonuclease H-like HRDC-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
MFS general substrate transporter MFS general substrate transporter 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
HAD-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
TGS-like Class II aaRS and biotin synthetases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
TPR-like Caspase-like 11
Macro domain-like Zn-dependent exopeptidases 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Toll/Interleukin receptor TIR domain P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like Phosphohistidine domain 11
P-loop containing nucleoside triphosphate hydrolases Microbial and mitochondrial ADK, insert "zinc finger" domain 11
Chaperone J-domain C-type lectin-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
CheW-like CheW-like 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Class II aaRS and biotin synthetases Translation proteins 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
Acetyl-CoA synthetase-like Trimeric LpxA-like enzymes 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins GAD domain-like 11
alpha-helical ferredoxin ARM repeat 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases P-loop containing nucleoside triphosphate hydrolases 11
RuvA domain 2-like RuvA domain 2-like 11
Thioredoxin-like Six-hairpin glycosidases 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Bacterial muramidases Bacterial muramidases 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Single hybrid motif TK C-terminal domain-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Nudix "Winged helix" DNA-binding domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11

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