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Domain combination pairs in Serratia sp. AS12

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

838 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1132
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4013
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2915
Homeodomain-like Homeodomain-like 298
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 231
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 231
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 205
GroES-like NAD(P)-binding Rossmann-fold domains 202
CheY-like C-terminal effector domain of the bipartite response regulators 182
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 185
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 173
Actin-like ATPase domain Actin-like ATPase domain 176
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 166
Thioredoxin-like GST C-terminal domain-like 151
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 142
Thiolase-like Thiolase-like 134
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 121
P-loop containing nucleoside triphosphate hydrolases MOP-like 121
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 1210
CoA-dependent acyltransferases CoA-dependent acyltransferases 1210
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 111
"Winged helix" DNA-binding domain PLP-dependent transferases 111
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 112
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 105
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 104
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 103
Regulatory protein AraC Homeodomain-like 101
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 104
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 102
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 93
P-loop containing nucleoside triphosphate hydrolases Translation proteins 97
ACP-like CoA-dependent acyltransferases 98
Homeodomain-like SIS domain 91
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 83
Acetyl-CoA synthetase-like ACP-like 87
(Trans)glycosidases Glycosyl hydrolase domain 85
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 82
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 82
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 82
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 86
Acetyl-CoA synthetase-like CoA-dependent acyltransferases 87
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 84
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 83
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 82
lambda repressor-like DNA-binding domains RmlC-like cupins 81
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 81
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 82
Homodimeric domain of signal transducing histidine kinase CheY-like 86
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 85
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 72
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 74
RmlC-like cupins Homeodomain-like 72
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 76
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
ACT-like ACT-like 65
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 65
Alpha-L RNA-binding motif Pseudouridine synthase 61
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 64
"Winged helix" DNA-binding domain GAF domain-like 61
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 63
Enolase N-terminal domain-like Enolase C-terminal domain-like 61
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 63
Class I glutamine amidotransferase-like Homeodomain-like 52
PurM N-terminal domain-like PurM C-terminal domain-like 52
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 55
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 52
Cytochrome c Cytochrome c 54
PreATP-grasp domain Rudiment single hybrid motif 52
HAD-like Calcium ATPase, transmembrane domain M 54
P-loop containing nucleoside triphosphate hydrolases ACT-like 52
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 55
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
ACP-like ACP-like 55
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
PapD-like Periplasmic chaperone C-domain 51
"Winged helix" DNA-binding domain Chorismate lyase-like 51
Nucleotide cyclase EAL domain-like 54
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 55
MetI-like MetI-like 54
CBS-domain pair FAD-binding/transporter-associated domain-like 51
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 52
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 55
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
Calcium ATPase, transduction domain A HAD-like 54
EF-G C-terminal domain-like EF-G C-terminal domain-like 43
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 44
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
E set domains (Trans)glycosidases 44
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 42
Single hybrid motif CoA-dependent acyltransferases 43
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 43
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 41
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 44
TrkA C-terminal domain-like TrkA C-terminal domain-like 42
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 42
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 43
Homeodomain-like Probable bacterial effector-binding domain 41
PYP-like sensor domain (PAS domain) Nucleotide cyclase 44
GAF domain-like Homeodomain-like 44
Translation proteins EF-G C-terminal domain-like 43
PYP-like sensor domain (PAS domain) Homeodomain-like 44
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 43
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 42
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 43
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 41
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 44
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 42
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 41
PLP-binding barrel Alanine racemase C-terminal domain-like 42
Phospholipase D/nuclease Phospholipase D/nuclease 43
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 33
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 32
TPR-like TPR-like 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
Arabinanase/levansucrase/invertase Concanavalin A-like lectins/glucanases 31
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Trypsin-like serine proteases PDZ domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
CheY-like Homeodomain-like 31
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
MFS general substrate transporter MFS general substrate transporter 31
Ribonuclease H-like DNA/RNA polymerases 32
Nucleic acid-binding proteins RuvA domain 2-like 33
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 33
CoA-dependent acyltransferases alpha/beta-Hydrolases 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
"Winged helix" DNA-binding domain Actin-like ATPase domain 31
(Trans)glycosidases Carbohydrate binding domain 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Glucose permease domain IIB Duplicated hybrid motif 32
CheY-like P-loop containing nucleoside triphosphate hydrolases 31
Nucleotidyltransferase HD-domain/PDEase-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
HD-domain/PDEase-like ACT-like 32
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 33
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 31
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 31
Nucleotidyltransferase ACT-like 32
ACP-like alpha/beta-Hydrolases 32
CheY-like Histidine-containing phosphotransfer domain, HPT domain 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
Thiolase-like ACP-like 33
Pheromone-binding domain of LuxR-like quorum-sensing transcription factors C-terminal effector domain of the bipartite response regulators 31
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 32
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 32
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 31
FabD/lysophospholipase-like ACP-like 33
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 32
PYP-like sensor domain (PAS domain) EAL domain-like 33
Fibronectin type III Carbohydrate binding domain 32
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 31
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 33
HlyD-like secretion proteins HlyD-like secretion proteins 32
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 31
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 32
Lysozyme-like beta-lactamase/transpeptidase-like 33
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
PDZ domain-like PDZ domain-like 32
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 32
Thiolase-like FabD/lysophospholipase-like 33
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 33
ACP-like NAD(P)-binding Rossmann-fold domains 33
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
(Trans)glycosidases Fibronectin type III 21
Cyclophilin-like PH0987 N-terminal domain-like 22
Zinc beta-ribbon Zinc beta-ribbon 22
Siroheme synthase middle domains-like Tetrapyrrole methylase 21
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 22
PTS system IIB component-like Phoshotransferase/anion transport protein 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
HAMP domain-like CheY-like 22
Carbamate kinase-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 22
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 22
Carbamate kinase-like ACT-like 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 21
Sensory domain-like Sporulation response regulatory protein Spo0B 21
L30e-like alpha/beta knot 22
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
TGS-like ACT-like 21
CheY-like CheY-like 22
TPR-like C-terminal effector domain of the bipartite response regulators 21
Translation proteins ThrRS/AlaRS common domain 22
lambda repressor-like DNA-binding domains LexA/Signal peptidase 21
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
HMA, heavy metal-associated domain HAD-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
ACT-like NAD(P)-binding Rossmann-fold domains 22
ACP-like PLP-dependent transferases 22
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 21
Translation proteins Ribosomal protein S5 domain 2-like 21
ISP domain Bet v1-like 21
Actin-like ATPase domain HD-domain/PDEase-like 21
PEP carboxykinase N-terminal domain PEP carboxykinase-like 21
Metalloproteases ("zincins"), catalytic domain beta-Roll 21
Nqo5-like HydB/Nqo4-like 21
"Winged helix" DNA-binding domain Ribokinase-like 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
Subtilisin-like Autotransporter 21
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Carbamate kinase-like NAD(P)-binding Rossmann-fold domains 22
Formyltransferase FMT C-terminal domain-like 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 22
CBS-domain pair MgtE membrane domain-like 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
E set domains Glycosyl hydrolase domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Galactose mutarotase-like (Trans)glycosidases 22
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 22
Thiolase-like NAD(P)-binding Rossmann-fold domains 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Sensory domain-like PYP-like sensor domain (PAS domain) 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Aconitase iron-sulfur domain LeuD/IlvD-like 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 22
(Trans)glycosidases Chitinase insertion domain 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 21
PYP-like sensor domain (PAS domain) CheY-like 22
Cupredoxins Cupredoxins 21
GAF domain-like PYP-like sensor domain (PAS domain) 22
AhpD-like AhpD-like 21
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 21
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 22
MalF N-terminal region-like MetI-like 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 21
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
HD-domain/PDEase-like TGS-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 22
SacY-like RNA-binding domain PTS-regulatory domain, PRD 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 21
Galactose-binding domain-like (Trans)glycosidases 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
DsbC/DsbG N-terminal domain-like Thioredoxin-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 21
Nucleotidyltransferase TGS-like 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
P-loop containing nucleoside triphosphate hydrolases TPR-like 21
NAD(P)-binding Rossmann-fold domains Tetrapyrrole methylase 21
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 21
PK beta-barrel domain-like PK C-terminal domain-like 21
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 22
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 21
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 21
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 22
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 21
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 22
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 22
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 21
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
(Trans)glycosidases Beta-D-glucan exohydrolase, C-terminal domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
YjeF N-terminal domain-like Ribokinase-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Bacterial adhesins Bacterial adhesins 11
THUMP domain-like Rhodanese/Cell cycle control phosphatase 11
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Clavaminate synthase-like S-adenosyl-L-methionine-dependent methyltransferases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Acetyl-CoA synthetase-like FabD/lysophospholipase-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Galactose mutarotase-like Galactose mutarotase-like 11
Globin-like Riboflavin synthase domain-like 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
(Trans)glycosidases (Trans)glycosidases 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Nitrite and sulphite reductase 4Fe-4S domain-like ISP domain 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
ACT-like Formyltransferase 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
ACT-like Homeodomain-like 11
Aldolase post-HMGL domain-like 11
Chorismate mutase II NAD(P)-binding Rossmann-fold domains 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Periplasmic binding protein-like II Lysozyme-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Class II aaRS and biotin synthetases SufE/NifU 11
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
MOSC N-terminal domain-like 2Fe-2S ferredoxin-like 11
Ribonuclease H-like RuvA domain 2-like 11
Fibronectin type III Fibronectin type III 11
YrdC/RibB Actin-like ATPase domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Molybdenum cofactor-binding domain Cytochrome c 11
CoA-dependent acyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Carbohydrate-binding domain E set domains 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Phoshotransferase/anion transport protein Phoshotransferase/anion transport protein 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Pectin lyase-like Pectin lyase-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
ALDH-like Dehydroquinate synthase-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
YajQ-like YajQ-like 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
"Winged helix" DNA-binding domain MukF C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
E set domains Fibronectin type III 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Protein kinase-like (PK-like) GAF domain-like 11
beta-Roll beta-Roll 11
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Galactose mutarotase-like E set domains 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
DeoB insert domain-like Alkaline phosphatase-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
HisI-like all-alpha NTP pyrophosphatases 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Band 7/SPFH domain Band 7/SPFH domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
P-loop containing nucleoside triphosphate hydrolases Isocitrate/Isopropylmalate dehydrogenase-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
YegP-like YegP-like 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
Adenine nucleotide alpha hydrolases-like Rhodanese/Cell cycle control phosphatase 11
JAB1/MPN domain Cysteine proteinases 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Thiolase-like CoA-dependent acyltransferases 11
Hsp33 domain HSP33 redox switch-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Periplasmic binding protein-like II CheY-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Nucleotidylyl transferase P-loop containing nucleoside triphosphate hydrolases 11
OMPA-like OmpA-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
HRDC-like HRDC-like 11
Rudiment single hybrid motif Cyclophilin-like 11
DNA-binding domain DNA breaking-rejoining enzymes 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
E set domains Carbohydrate binding domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
FabD/lysophospholipase-like PLP-dependent transferases 11
ACT-like PYP-like sensor domain (PAS domain) 11
Chorismate mutase II Periplasmic binding protein-like II 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Nucleotide-diphospho-sugar transferases Acyl-CoA N-acyltransferases (Nat) 11
Nudix Nudix 11
P-loop containing nucleoside triphosphate hydrolases Zn-binding ribosomal proteins 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Tex N-terminal region-like Ribonuclease H-like 11
PTS-regulatory domain, PRD PTS system IIB component-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
lambda repressor-like DNA-binding domains Nucleotidylyl transferase 11
GAF domain-like GAF domain-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
P-loop containing nucleoside triphosphate hydrolases Periplasmic binding protein-like II 11
Cyclophilin-like Single hybrid motif 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
CheY-like PLP-dependent transferases 11
Galactose mutarotase-like Six-hairpin glycosidases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Protein kinase-like (PK-like) PYP-like sensor domain (PAS domain) 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Ribokinase-like Nucleotidylyl transferase 11
CarD-like TRCF domain-like 11
Acyl-CoA N-acyltransferases (Nat) Nucleotidylyl transferase 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Tex N-terminal region-like RuvA domain 2-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Periplasmic binding protein-like II GlnB-like 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
PHP14-like Phospholipase D/nuclease 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase CoA-dependent acyltransferases 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Cytidine deaminase-like Cytidine deaminase-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
beta-N-acetylhexosaminidase-like domain E set domains 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
MgtE N-terminal domain-like CBS-domain pair 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
Nitrite/Sulfite reductase N-terminal domain-like ISP domain 11
AhpD-like alpha/beta-Hydrolases 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
NTF2-like Sec-C motif 11
Zinc beta-ribbon DNA primase core 11
Ribbon-helix-helix Tetramerization domain of the Mnt repressor 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
HesB-like domain Fe-S cluster assembly (FSCA) domain-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
PTS system IIB component-like PTS system IIB component-like 11
FKBP-like FKBP-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Translation proteins "Winged helix" DNA-binding domain 11
Homeodomain-like DNA-glycosylase 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
CheY-binding domain of CheA CheW-like 11
GAF domain-like Phosphohistidine domain 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
FAD-linked oxidoreductase ALDH-like 11
Barwin-like endoglucanases Sporulation related repeat 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
PTS system fructose IIA component-like PTS IIb component 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
FliG FliG 11
4Fe-4S ferredoxins ADC-like 11
Cyclophilin-like Cyclophilin-like 11
Homeodomain-like Periplasmic binding protein-like II 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
PIN domain-like Ribonuclease H-like 11
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Glycerol-3-phosphate (1)-acyltransferase Acyl-CoA N-acyltransferases (Nat) 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
RuvA domain 2-like RuvA domain 2-like 11
RNase III domain-like dsRNA-binding domain-like 11
ClpP/crotonase ClpP/crotonase 11
SGNH hydrolase Autotransporter 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 11
Acetyl-CoA synthetase-like Bacterial luciferase-like 11
Nucleic acid-binding proteins GAD domain-like 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Trigger factor ribosome-binding domain FKBP-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Ribonuclease H-like Nucleic acid-binding proteins 11
RuvA domain 2-like BRCT domain 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
E set domains Chitinase insertion domain 11
Lysozyme-like LysM domain 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Flavoproteins Riboflavin synthase domain-like 11
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Periplasmic binding protein-like II ACT-like 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
ACP-like S-adenosyl-L-methionine-dependent methyltransferases 11
Phoshotransferase/anion transport protein HPr-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
PDZ domain-like ClpP/crotonase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
CheC-like Surface presentation of antigens (SPOA) 11
Thioredoxin-like TPR-like 11
FabD/lysophospholipase-like CoA-dependent acyltransferases 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Nqo1 FMN-binding domain-like alpha-helical ferredoxin 11
DNA-glycosylase Nudix 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 11
Acyl-CoA N-acyltransferases (Nat) Thioesterase/thiol ester dehydrase-isomerase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Galactose-binding domain-like Galactose mutarotase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
YdgH-like YdgH-like 11
PH0987 N-terminal domain-like Single hybrid motif 11
Acetyl-CoA synthetase-like Thiolase-like 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
H-NS histone-like proteins H-NS histone-like proteins 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Carbamate kinase-like PUA domain-like 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Chorismate mutase II ACT-like 11
SIS domain CBS-domain pair 11
Glutathione synthetase ATP-binding domain-like Acyl-CoA N-acyltransferases (Nat) 11
Ribbon-helix-helix ALDH-like 11
Bacterial muramidases Lysozyme-like 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
HAD-like Ribosomal protein S5 domain 2-like 11
Formyltransferase NAD(P)-binding Rossmann-fold domains 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
TATA-box binding protein-like DNA-glycosylase 11
Ribonuclease H-like HRDC-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 11
RuvA domain 2-like JAB1/MPN domain 11
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 11
PLP-dependent transferases PLP-dependent transferases 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
TK C-terminal domain-like 4Fe-4S ferredoxins 11
Isochorismatase-like hydrolases ACP-like 11
Ribosomal protein L6 Ribosomal protein L6 11
DNA clamp DNA clamp 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Carboxypeptidase regulatory domain-like SGNH hydrolase 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Acyl-CoA N-acyltransferases (Nat) 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Chitinase insertion domain Carbohydrate binding domain 11
Inosine monophosphate dehydrogenase (IMPDH) PLP-dependent transferases 11
CheY-like "Winged helix" DNA-binding domain 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Acetyl-CoA synthetase-like S-adenosyl-L-methionine-dependent methyltransferases 11
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
Homeodomain-like TATA-box binding protein-like 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Pseudouridine synthase PUA domain-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Translation proteins Translation proteins 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
PheT/TilS domain Putative DNA-binding domain 11
PPK N-terminal domain-like PHP14-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
PurS-like Class I glutamine amidotransferase-like 11
PTS system fructose IIA component-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Single hybrid motif Single hybrid motif 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Ribbon-helix-helix Replication modulator SeqA, C-terminal DNA-binding domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
Macro domain-like Zn-dependent exopeptidases 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
Bacterial luciferase-like S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
FMN-binding split barrel FMN-binding split barrel 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
PurS-like PurM N-terminal domain-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Nucleotidylyl transferase tRNA-binding arm 11
MFS general substrate transporter Proline/betaine transporter ProP, C-terminal cytoplasmic domain 11
2Fe-2S ferredoxin-like ADC-like 11
UROD/MetE-like UROD/MetE-like 11
alpha/beta-Hydrolases beta-Roll 11
Periplasmic binding protein-like I Homeodomain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Nucleic acid-binding proteins BRCT domain 11
Chorismate mutase II 6-phosphogluconate dehydrogenase C-terminal domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
MOP-like MOP-like 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes CBS-domain pair 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
TGS-like Class II aaRS and biotin synthetases 11
TGS-like Class II aaRS ABD-related 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
alpha-helical ferredoxin Nucleotide-binding domain 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
CheY-like Methylesterase CheB, C-terminal domain 11
FAD/NAD(P)-binding domain ISP domain 11
E set domains E set domains 11
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 11
PurS-like PurM C-terminal domain-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
NAD(P)-binding Rossmann-fold domains Acyl-CoA N-acyltransferases (Nat) 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
ALDH-like Thioesterase/thiol ester dehydrase-isomerase 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PUA domain-like alpha/beta knot 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase PLP-dependent transferases 11
HprK N-terminal domain-like Isocitrate/Isopropylmalate dehydrogenase-like 11
E set domains alpha/beta-Hydrolases 11
PTS system fructose IIA component-like Phosphohistidine domain 11
TGS-like ThrRS/AlaRS common domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
PIN domain-like DNA/RNA polymerases 11
Rudiment single hybrid motif Single hybrid motif 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 11
CheY-like Ornithine decarboxylase C-terminal domain 11
GroEL-intermediate domain like GroEL apical domain-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
beta-Galactosidase/glucuronidase domain Galactose mutarotase-like 11
PreATP-grasp domain Single hybrid motif 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Translation proteins PRC-barrel domain 11
Homeodomain-like Ribonuclease H-like 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
ACP-like Bacterial luciferase-like 11
Enolase C-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
PTS system fructose IIA component-like HPr-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
"Winged helix" DNA-binding domain MOP-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Nucleic acid-binding proteins PheT/TilS domain 11
Zn-dependent exopeptidases LysM domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
Acetyl-CoA synthetase-like PLP-dependent transferases 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Homocysteine S-methyltransferase Methionine synthase domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Sensory domain-like Nucleotide cyclase 11
FMT C-terminal domain-like NAD(P)-binding Rossmann-fold domains 11
LysM domain LysM domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
PurS-like FGAM synthase PurL, linker domain 11
GroES-like GroES-like 11
Putative DNA-binding domain Translation proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
YVTN repeat-like/Quinoprotein amine dehydrogenase MetI-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
PrpR receptor domain-like Homeodomain-like 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
HIT-like HIT-like 11
Carbohydrate-binding domain (Trans)glycosidases 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
GroEL equatorial domain-like GroEL apical domain-like 11
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
CoA-dependent acyltransferases Bacterial luciferase-like 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases CoA-dependent acyltransferases 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
FMN-binding split barrel UbiD C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
DNA primase core DNA primase DnaG, C-terminal domain 11
ACT-like Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 11
PreATP-grasp domain Cyclophilin-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Thiolase-like PLP-dependent transferases 11
HPr-like Phosphohistidine domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Cation efflux protein cytoplasmic domain-like Cation efflux protein cytoplasmic domain-like 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Methionine synthase domain Methionine synthase activation domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Acetyl-CoA synthetase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Glutathione synthetase ATP-binding domain-like Single hybrid motif 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11

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