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Domain combination pairs in Geobacter bemidjiensis Bem

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

793 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 12165
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 7243
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 6841
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 5738
Homodimeric domain of signal transducing histidine kinase CheY-like 5536
CheY-like PYP-like sensor domain (PAS domain) 4731
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 3426
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 316
CheY-like P-loop containing nucleoside triphosphate hydrolases 282
CheY-like Homeodomain-like 262
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2418
GAF domain-like Homodimeric domain of signal transducing histidine kinase 2418
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2415
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 2314
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2212
Multiheme cytochromes Multiheme cytochromes 1813
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 164
GAF domain-like CheY-like 1513
Actin-like ATPase domain Actin-like ATPase domain 154
GAF domain-like PYP-like sensor domain (PAS domain) 1513
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 126
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 129
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 118
TPR-like TPR-like 1110
HAMP domain-like PYP-like sensor domain (PAS domain) 1110
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 119
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 119
P-loop containing nucleoside triphosphate hydrolases Translation proteins 117
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 103
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 105
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 107
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 96
GroES-like NAD(P)-binding Rossmann-fold domains 91
Sensory domain-like HAMP domain-like 97
Homeodomain-like Ribonuclease H-like 91
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 92
CheY-like Nucleotide cyclase 86
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 83
HAMP domain-like CheY-like 88
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 85
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 85
Histidine-containing phosphotransfer domain, HPT domain CheW-like 85
Thiolase-like Thiolase-like 82
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 83
PYP-like sensor domain (PAS domain) Nucleotide cyclase 87
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 72
Nucleotide cyclase EAL domain-like 77
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 76
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 72
Homodimeric domain of signal transducing histidine kinase CheW-like 74
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 75
CheY-like C-terminal effector domain of the bipartite response regulators 71
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 71
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 75
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 64
Histidine-containing phosphotransfer domain, HPT domain CheY-like 66
Cytochrome c Cytochrome c 64
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 64
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 65
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 65
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 65
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 65
CheY-like Methylesterase CheB, C-terminal domain 61
CheY-like CheY-like 65
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 66
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 64
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 64
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 61
ACT-like ACT-like 63
Nucleic acid-binding proteins Nucleic acid-binding proteins 54
Translation proteins EF-G C-terminal domain-like 53
PLP-binding barrel Alanine racemase C-terminal domain-like 52
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 53
PurM N-terminal domain-like PurM C-terminal domain-like 52
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 54
PreATP-grasp domain Rudiment single hybrid motif 53
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 53
Calcium ATPase, transduction domain A HAD-like 54
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 54
HAD-like Calcium ATPase, transmembrane domain M 54
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 53
Triger factor/SurA peptide-binding domain-like FKBP-like 54
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 53
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 52
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
Sensory domain-like PYP-like sensor domain (PAS domain) 55
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 53
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 51
EF-G C-terminal domain-like EF-G C-terminal domain-like 53
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 42
E set domains (Trans)glycosidases 43
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 42
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 43
GAF domain-like Nucleotide cyclase 44
PYP-like sensor domain (PAS domain) Homeodomain-like 43
Homeodomain-like Homeodomain-like 43
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 43
"Winged helix" DNA-binding domain GAF domain-like 41
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 42
Nucleotidyltransferase Poly A polymerase C-terminal region-like 44
4Fe-4S ferredoxins Adenine nucleotide alpha hydrolases-like 41
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 42
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 41
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 43
Thiamin diphosphate-binding fold (THDP-binding) 4Fe-4S ferredoxins 43
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 43
Phospholipase D/nuclease Phospholipase D/nuclease 44
OMPA-like OmpA-like 42
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 43
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 42
CheY-like HD-domain/PDEase-like 41
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 43
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 41
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 44
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 41
PUA domain-like Ribosomal protein S5 domain 2-like 43
EspE N-terminal domain-like CheY-like 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 43
P-loop containing nucleoside triphosphate hydrolases MOP-like 41
PYP-like sensor domain (PAS domain) EAL domain-like 44
4Fe-4S ferredoxins DHS-like NAD/FAD-binding domain 41
lambda repressor-like DNA-binding domains RmlC-like cupins 42
TK C-terminal domain-like 4Fe-4S ferredoxins 43
GAF domain-like HD-domain/PDEase-like 44
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 32
Alpha-L RNA-binding motif Pseudouridine synthase 31
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 33
CheY-like PP2C-like 33
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 33
Nucleic acid-binding proteins RuvA domain 2-like 33
CheW-like CheY-like 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 31
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Nqo1 middle domain-like Nqo1C-terminal domain-like 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 33
Translation proteins Ribosomal protein S5 domain 2-like 31
"Winged helix" DNA-binding domain PLP-dependent transferases 31
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 33
alpha-helical ferredoxin Nucleotide-binding domain 32
Sensory domain-like CheY-like 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 33
ClpP/crotonase ClpP/crotonase 31
Aconitase iron-sulfur domain LeuD/IlvD-like 33
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 32
Single hybrid motif CoA-dependent acyltransferases 32
Nucleic acid-binding proteins Translation proteins SH3-like domain 32
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 31
4Fe-4S ferredoxins ADC-like 32
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 32
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 31
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 31
Aldolase post-HMGL domain-like 33
(Trans)glycosidases Glycosyl hydrolase domain 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
HlyD-like secretion proteins HlyD-like secretion proteins 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 31
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
Cytochrome c Multiheme cytochromes 33
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 33
HAMP domain-like GAF domain-like 33
P-loop containing nucleoside triphosphate hydrolases HprK N-terminal domain-like 32
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 33
CheY-like EAL domain-like 33
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 31
HCP-like HCP-like 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
Cupredoxins Cupredoxins 33
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 33
MoeA N-terminal region -like MoeA C-terminal domain-like 31
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 32
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 32
CheY-like PilZ domain-like 31
HAMP domain-like Nucleotide cyclase 33
Periplasmic binding protein-like II CheY-like 33
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 33
GAF domain-like GAF domain-like 33
Trypsin-like serine proteases PDZ domain-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
post-HMGL domain-like Single hybrid motif 22
S-adenosyl-L-methionine-dependent methyltransferases DNA methylase specificity domain 22
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 21
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Nqo1 middle domain-like 4Fe-4S ferredoxins 21
Nucleotidyltransferase ACT-like 22
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Ferritin-like Rubredoxin-like 21
GAF domain-like EspE N-terminal domain-like 22
(Trans)glycosidases NAD(P)-binding Rossmann-fold domains 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Multiheme cytochromes Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain TPR-like 22
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Thioredoxin-like Nqo1 FMN-binding domain-like 21
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
PYP-like sensor domain (PAS domain) PP2C-like 22
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 21
PEP carboxykinase N-terminal domain PEP carboxykinase-like 21
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 21
Cadherin-like Cadherin-like 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
CheY-like TPR-like 22
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 22
CBS-domain pair DHH phosphoesterases 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 22
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 21
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 4Fe-4S ferredoxins 22
HydA/Nqo6-like 4Fe-4S ferredoxins 22
Thioredoxin-like Nqo1C-terminal domain-like 21
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 22
E set domains Glycosyl hydrolase domain 21
Nucleotidyltransferase Nucleotidyltransferase 22
PDZ domain-like ClpP/crotonase 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 21
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
HAMP domain-like HD-domain/PDEase-like 22
Nqo1 FMN-binding domain-like 4Fe-4S ferredoxins 21
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 22
Aldolase Single hybrid motif 22
Thioredoxin-like Nqo1 middle domain-like 21
Glycerol-3-phosphate (1)-acyltransferase Acetyl-CoA synthetase-like 22
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 22
Nucleotide-diphospho-sugar transferases S-adenosyl-L-methionine-dependent methyltransferases 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 22
Nqo5-like HydB/Nqo4-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
HMA, heavy metal-associated domain HAD-like 22
Phage tail proteins gp5 N-terminal domain-like 22
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 22
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Thiolase-like FabD/lysophospholipase-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 21
FMN-binding split barrel UbiD C-terminal domain-like 22
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
OmpA-like OmpA-like 21
Multiheme cytochromes FAD/NAD(P)-binding domain 21
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 21
LysM domain LysM domain 22
Rudiment single hybrid motif Single hybrid motif 22
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 22
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 22
Thioredoxin-like 4Fe-4S ferredoxins 21
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 22
DsbC/DsbG N-terminal domain-like Thioredoxin-like 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
Nucleotide-diphospho-sugar transferases TPR-like 22
Pili subunits Pili subunits 21
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 22
PDZ domain-like PDZ domain-like 22
DNA methylase specificity domain DNA methylase specificity domain 22
Formyltransferase FMT C-terminal domain-like 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
RCC1/BLIP-II RCC1/BLIP-II 22
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Lysozyme-like beta-lactamase/transpeptidase-like 22
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 22
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
PIN domain-like Ribonuclease H-like 22
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
"Winged helix" DNA-binding domain LexA/Signal peptidase 21
PreATP-grasp domain Single hybrid motif 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Nqo1C-terminal domain-like 4Fe-4S ferredoxins 21
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
2Fe-2S ferredoxin-like ADC-like 21
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 22
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
MgtE N-terminal domain-like CBS-domain pair 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
EPT/RTPC-like RNA 3'-terminal phosphate cyclase, RPTC, insert domain 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Tex N-terminal region-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Nudix Nudix 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Transposase IS200-like TrpR-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Nucleic acid-binding proteins GAD domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CheY-like Chaperone J-domain 11
CheC-like Surface presentation of antigens (SPOA) 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases Trm112p-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
YjeF N-terminal domain-like Ribokinase-like 11
alpha/beta-Hydrolases OsmC-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
PKD domain PKD domain 11
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Class II aaRS and biotin synthetases Translation proteins 11
PHP domain-like AF1531-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
GAF domain-like Phosphohistidine domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Tetrapyrrole methylase P-loop containing nucleoside triphosphate hydrolases 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Tetrapyrrole methylase HemD-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
Rubredoxin-like Metallo-hydrolase/oxidoreductase 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
PreATP-grasp domain PreATP-grasp domain 11
Lysozyme-like LysM domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
TGS-like ThrRS/AlaRS common domain 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Ferritin-like Calcium ATPase, transduction domain A 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
HprK N-terminal domain-like DHH phosphoesterases 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 11
Zinc beta-ribbon DNA primase core 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Periplasmic binding protein-like II ACT-like 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
ClpP/crotonase NfeD domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
PsbU/PolX domain-like FKBP-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
CBS-domain pair PP2C-like 11
CheY-like S-adenosyl-L-methionine-dependent methyltransferases 11
RNase III domain-like dsRNA-binding domain-like 11
ARM repeat ARM repeat 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like 11
Putative DNA-binding domain DNA methylase specificity domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
RuvA domain 2-like RuvA domain 2-like 11
PheT/TilS domain Putative DNA-binding domain 11
Nucleic acid-binding proteins BRCT domain 11
Rubredoxin-like Superoxide reductase-like 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Trimeric LpxA-like enzymes RmlC-like cupins 11
Nucleotidyltransferase TGS-like 11
NAD(P)-linked oxidoreductase 4Fe-4S ferredoxins 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Translation proteins "Winged helix" DNA-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Integrin alpha N-terminal domain Terpenoid cyclases/Protein prenyltransferases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Aldolase AFP III-like domain 11
NE0471 N-terminal domain-like Nucleotidyltransferase 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Putative DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
MFS general substrate transporter Acetyl-CoA synthetase-like 11
ABC transporter involved in vitamin B12 uptake, BtuC "Winged helix" DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
"Winged helix" DNA-binding domain NosL/MerB-like 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
4Fe-4S ferredoxins Homeodomain-like 11
Galactose oxidase, central domain Calcium-dependent phosphotriesterase 11
Galactose oxidase, central domain Invasin/intimin cell-adhesion fragments 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Rudiment single hybrid motif post-HMGL domain-like 11
E set domains E set domains 11
C-type lectin-like S-adenosyl-L-methionine-dependent methyltransferases 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
HydA/Nqo6-like HydB/Nqo4-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 11
NAD(P)-binding Rossmann-fold domains RmlC-like cupins 11
NTF2-like Sec-C motif 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
NagB/RpiA/CoA transferase-like Acyl-CoA N-acyltransferases (Nat) 11
Fe-only hydrogenase P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Zinc beta-ribbon Zinc beta-ribbon 11
Cupredoxins Fibronectin type III 11
CarD-like TRCF domain-like 11
FabD/lysophospholipase-like ACP-like 11
lambda repressor-like DNA-binding domains Isocitrate/Isopropylmalate dehydrogenase-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Glycerol-3-phosphate (1)-acyltransferase alpha/beta-Hydrolases 11
SGNH hydrolase Nucleotide-diphospho-sugar transferases 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Sporulation related repeat Cysteine proteinases 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
PurS-like PurM C-terminal domain-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Ribonuclease H-like Nucleic acid-binding proteins 11
Nucleotidylyl transferase tRNA-binding arm 11
HD-domain/PDEase-like ACT-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
AbrB/MazE/MraZ-like Nucleic acid-binding proteins 11
Bacterial muramidases Lysozyme-like 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Translation proteins ThrRS/AlaRS common domain 11
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Formate dehydrogenase/DMSO reductase, domains 1-3 PLP-dependent transferases 11
Ribbon-helix-helix ACT-like 11
EspE N-terminal domain-like Homodimeric domain of signal transducing histidine kinase 11
TTHA1013/TTHA0281-like Ribbon-helix-helix 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
PurS-like PurM N-terminal domain-like 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
RuvA domain 2-like BRCT domain 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Phage tail proteins Phage tail proteins 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Acid proteases PDZ domain-like 11
Galactose-binding domain-like (Trans)glycosidases 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Outer membrane efflux proteins (OEP) 11
HCP-like L,D-transpeptidase catalytic domain-like 11
P-loop containing nucleoside triphosphate hydrolases TPR-like 11
TPR-like Bacterial muramidases 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
Nucleotidyltransferase substrate binding subunit/domain Poly A polymerase C-terminal region-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
AbrB/MazE/MraZ-like P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Methyl-accepting chemotaxis protein (MCP) signaling domain PilZ domain-like 11
Translation proteins Translation proteins 11
Acetyl-CoA synthetase-like ACP-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
ADC-like PLP-dependent transferases 11
Phage tail proteins Phage fibre proteins 11
LysM domain Cysteine proteinases 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
4Fe-4S ferredoxins Nitrite and sulphite reductase 4Fe-4S domain-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Trimeric LpxA-like enzymes Phosphoglucomutase, first 3 domains 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
PHP14-like Phospholipase D/nuclease 11
Serine metabolism enzymes domain ACT-like 11
PreATP-grasp domain post-HMGL domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Ferritin-like HMA, heavy metal-associated domain 11
"Winged helix" DNA-binding domain MOP-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Translation proteins PRC-barrel domain 11
Thioredoxin-like TPR-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
cAMP-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
GAF domain-like Homeodomain-like 11
TGS-like Class II aaRS and biotin synthetases 11
Thiolase-like Thioesterase/thiol ester dehydrase-isomerase 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 11
ACP-like Glycerol-3-phosphate (1)-acyltransferase 11
YWTD domain NHL repeat 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase NAD(P)-binding Rossmann-fold domains 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
FliG FliG 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Ribonuclease H-like DNA/RNA polymerases 11
YlxR-like L30e-like 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
HAMP domain-like EAL domain-like 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Poly A polymerase C-terminal region-like ACT-like 11
Metallo-hydrolase/oxidoreductase Flavoproteins 11
PK beta-barrel domain-like PK C-terminal domain-like 11
all-alpha NTP pyrophosphatases all-alpha NTP pyrophosphatases 11
L30e-like alpha/beta knot 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases PGBD-like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
TPR-like Lysozyme-like 11
GAF domain-like PP2C-like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
"Helical backbone" metal receptor "Helical backbone" metal receptor 11
GAF domain-like EAL domain-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
NE0471 N-terminal domain-like lambda repressor-like DNA-binding domains 11
DHH phosphoesterases Nucleotidyltransferase 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Thiamin phosphate synthase Ribokinase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
CBS-domain pair Poly A polymerase C-terminal region-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
Hypothetical protein PA1324 OmpA-like 11
YajQ-like YajQ-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
TPR-like MetI-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Periplasmic binding protein-like II GlnB-like 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
GAF domain-like Phosphoenolpyruvate/pyruvate domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Class I glutamine amidotransferase-like Homeodomain-like 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
Macro domain-like Zn-dependent exopeptidases 11
Ribonuclease H-like RuvA domain 2-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Multidrug efflux transporter AcrB transmembrane domain Outer membrane efflux proteins (OEP) 11
Chaperone J-domain RNI-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
Nucleotide-binding domain 4Fe-4S ferredoxins 11
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 11
EAL domain-like HD-domain/PDEase-like 11
TGS-like Class II aaRS ABD-related 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
EspE N-terminal domain-like HD-domain/PDEase-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
PPK N-terminal domain-like PHP14-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
TPR-like Carbohydrate-binding domain 11
FabD/lysophospholipase-like NAD(P)-binding Rossmann-fold domains 11
FAD/NAD(P)-binding domain Nucleotide-binding domain 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
Cupredoxins Cytochrome c 11
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
Thiolase-like NAD(P)-binding Rossmann-fold domains 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Probable ACP-binding domain of malonyl-CoA ACP transacylase ACP-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
DNA clamp DNA clamp 11
CBS-domain pair Nucleotidyltransferase 11
GAF domain-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
HprK N-terminal domain-like CBS-domain pair 11
Ribosomal protein L6 Ribosomal protein L6 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, first 3 domains 11
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 11
Radical SAM enzymes TPR-like 11
SirA-like DsrEFH-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Thiolase-like ACP-like 11
HydA/Nqo6-like Nqo5-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
FAD-linked oxidoreductase ALDH-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
TGS-like ACT-like 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DHH phosphoesterases Poly A polymerase C-terminal region-like 11
Chaperone J-domain TPR-like 11
Nucleotidyltransferase PHP domain-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Metallo-dependent hydrolases Radical SAM enzymes 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Rudiment single hybrid motif Aldolase 11
lambda repressor-like DNA-binding domains CheY-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Bet v1-like TT1751-like 11
Homocysteine S-methyltransferase Methionine synthase domain 11
GAF domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
EreA/ChaN-like PDZ domain-like 11
HD-domain/PDEase-like TGS-like 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
L,D-transpeptidase catalytic domain-like Sporulation related repeat 11
GroEL equatorial domain-like GroEL apical domain-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
FabD/lysophospholipase-like Thioesterase/thiol ester dehydrase-isomerase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Hemerythrin-like 11
Single hybrid motif Single hybrid motif 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
ABC transporter involved in vitamin B12 uptake, BtuC Iron-dependent repressor protein, dimerization domain 11
HIT-like HIT-like 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
TPR-like C-terminal effector domain of the bipartite response regulators 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Outer membrane efflux proteins (OEP) 11
MOP-like MOP-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 11
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 11
Nucleotide-diphospho-sugar transferases Phosphoglucomutase, C-terminal domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
4Fe-4S ferredoxins Fe-only hydrogenase 11
YrdC/RibB RibA-like 11
EspE N-terminal domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Hsp33 domain HSP33 redox switch-like 11
Ribokinase-like Nucleotidylyl transferase 11
YrdC/RibB Actin-like ATPase domain 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Cytidine deaminase-like Nucleotide-diphospho-sugar transferases 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 11
SufE/NifU Fe-S cluster assembly (FSCA) domain-like 11
Carbamate kinase-like PUA domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Thioredoxin-like Six-hairpin glycosidases 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Ferritin-like HAD-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
Chorismate mutase II ACT-like 11
CheY-like Chemotaxis receptor methyltransferase CheR, N-terminal domain 11
Histidine-containing phosphotransfer domain, HPT domain EspE N-terminal domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 11
Carbamate kinase-like ACT-like 11
ACP-like ACP-like 11
Multiheme cytochromes E set domains 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Nucleotide-diphospho-sugar transferases NAD(P)-binding Rossmann-fold domains 11
PreATP-grasp domain Aldolase 11
RmlC-like cupins Isocitrate/Isopropylmalate dehydrogenase-like 11
Thiolase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
Fe-only hydrogenase Homeodomain-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
gp5 N-terminal domain-like Phage fibre proteins 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
HRDC-like HRDC-like 11
TPR-like Porins 11
Starch-binding domain-like E set domains 11
Protease propeptides/inhibitors Subtilisin-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Calcium-dependent phosphotriesterase Invasin/intimin cell-adhesion fragments 11
PUA domain-like alpha/beta knot 11
MetI-like MetI-like 11
HprK N-terminal domain-like PEP carboxykinase-like 11
PDZ domain-like Radical SAM enzymes 11
Tetrapyrrole methylase Class I glutamine amidotransferase-like 11
DPP6 N-terminal domain-like Alkaline phosphatase-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
Nucleotide-binding domain FAD-linked reductases, C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Homeodomain-like Probable bacterial effector-binding domain 11
Trimeric LpxA-like enzymes Phosphoglucomutase, C-terminal domain 11
Periplasmic binding protein-like II GAF domain-like 11
PIN domain-like DNA/RNA polymerases 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
DPP6 N-terminal domain-like TPR-like 11
PKD domain Terpenoid cyclases/Protein prenyltransferases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Starch-binding domain-like (Trans)glycosidases 11
Ribonuclease H-like HRDC-like 11
DNA repair protein MutS, domain III SMR domain-like 11
RuvA domain 2-like P-loop containing nucleoside triphosphate hydrolases 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
PKD domain Integrin alpha N-terminal domain 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
Tex N-terminal region-like Ribonuclease H-like 11
RuvA domain 2-like MCP/YpsA-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Dihydrofolate reductase-like TPR-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
RuvA domain 2-like JAB1/MPN domain 11
EspE N-terminal domain-like CheW-like 11
4Fe-4S ferredoxins Radical SAM enzymes 11

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