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Domain combination pairs in Bacillus coagulans 2-6

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

593 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 2513
Actin-like ATPase domain Actin-like ATPase domain 152
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 155
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 112
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 102
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 108
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 93
CheY-like C-terminal effector domain of the bipartite response regulators 81
Thiolase-like Thiolase-like 71
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 73
(Trans)glycosidases Glycosyl hydrolase domain 74
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 72
GroES-like NAD(P)-binding Rossmann-fold domains 73
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 71
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases Translation proteins 65
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 61
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 61
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 65
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 66
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 53
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 52
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 51
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 53
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 52
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 54
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 53
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 52
"Winged helix" DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 54
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 53
LysM domain LysM domain 55
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 51
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 51
Translation proteins EF-G C-terminal domain-like 43
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 43
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 42
HAD-like Calcium ATPase, transmembrane domain M 44
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 43
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 44
Calcium ATPase, transduction domain A HAD-like 44
Single hybrid motif CoA-dependent acyltransferases 41
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 41
PTS-regulatory domain, PRD PTS-regulatory domain, PRD 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 43
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 42
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 41
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 44
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 41
Class II aaRS and biotin synthetases Class II aaRS ABD-related 43
Homeodomain-like SIS domain 32
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 33
CBS-domain pair P-loop containing nucleoside triphosphate hydrolases 32
Galactose mutarotase-like Six-hairpin glycosidases 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 32
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 31
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 31
PreATP-grasp domain Rudiment single hybrid motif 31
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 31
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 31
NAD(P)-binding Rossmann-fold domains ACT-like 33
"Winged helix" DNA-binding domain PTS-regulatory domain, PRD 32
Lysozyme-like beta-lactamase/transpeptidase-like 32
PurM N-terminal domain-like PurM C-terminal domain-like 32
"Winged helix" DNA-binding domain PTS system IIB component-like 32
PTS system IIB component-like Phoshotransferase/anion transport protein 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
ACT-like ACT-like 32
RuvA domain 2-like Nucleic acid-binding proteins 33
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 32
PTS-regulatory domain, PRD PTS system IIB component-like 32
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
PLP-binding barrel Alanine racemase C-terminal domain-like 31
cAMP-binding domain-like "Winged helix" DNA-binding domain 31
Phosphoenolpyruvate/pyruvate domain Phosphohistidine domain 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Phospholipase D/nuclease Phospholipase D/nuclease 32
HAMP domain-like PYP-like sensor domain (PAS domain) 32
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 22
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 21
beta-lactamase/transpeptidase-like Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
Homeodomain-like Homeodomain-like 21
Nucleic acid-binding proteins Translation proteins SH3-like domain 22
Trypsin-like serine proteases PDZ domain-like 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
GAF domain-like "Winged helix" DNA-binding domain 22
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 22
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 21
"Winged helix" DNA-binding domain Chorismate lyase-like 21
"Winged helix" DNA-binding domain CBS-domain pair 22
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 22
4Fe-4S ferredoxins ADC-like 21
PDZ domain-like PGBD-like 21
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 21
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 21
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 21
Sensory domain-like PYP-like sensor domain (PAS domain) 22
"Winged helix" DNA-binding domain Phoshotransferase/anion transport protein 21
MalF N-terminal region-like MetI-like 22
(Trans)glycosidases Cyclophilin-like 21
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 22
DNA methylase specificity domain DNA methylase specificity domain 21
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 21
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 21
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 21
L30e-like alpha/beta knot 21
"Winged helix" DNA-binding domain Thioesterase/thiol ester dehydrase-isomerase 22
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
TPR-like TPR-like 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 22
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
ClpP/crotonase PGBD-like 21
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 21
Penicillin binding protein dimerisation domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 22
HMA, heavy metal-associated domain HAD-like 22
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 21
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Serine metabolism enzymes domain ACT-like 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 21
PDZ domain-like ClpP/crotonase 21
LysM domain Cysteine proteinases 22
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 22
Carbamate kinase-like ACT-like 21
PYP-like sensor domain (PAS domain) Homeodomain-like 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
ParB/Sulfiredoxin KorB DNA-binding domain-like 21
CheC-like Surface presentation of antigens (SPOA) 22
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
2Fe-2S ferredoxin-like ADC-like 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 22
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases Glucocorticoid receptor-like (DNA-binding domain) 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Ribonuclease H-like Nucleic acid-binding proteins 22
FKBP-like Triger factor/SurA peptide-binding domain-like 22
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 21
LysM domain (Trans)glycosidases 22
PTS-regulatory domain, PRD Phoshotransferase/anion transport protein 21
PreATP-grasp domain PreATP-grasp domain 21
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 21
PreATP-grasp domain Methylglyoxal synthase-like 21
Alpha-L RNA-binding motif Pseudouridine synthase 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 21
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 21
Cupredoxins Cupredoxins 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 22
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 21
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
Translation proteins ThrRS/AlaRS common domain 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Prokaryotic type KH domain (KH-domain type II) R3H domain 11
DNA repair protein MutS, domain III SMR domain-like 11
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
YjeF N-terminal domain-like Ribokinase-like 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
"Winged helix" DNA-binding domain PRTase-like 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
RNase III domain-like dsRNA-binding domain-like 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
Periplasmic binding protein-like II ACT-like 11
"Winged helix" DNA-binding domain Putative transcriptional regulator TM1602, C-terminal domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
Nucleotidyltransferase Poly A polymerase C-terminal region-like 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Translation proteins PRC-barrel domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Class II aaRS and biotin synthetases GAD domain-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Tropomyosin Duplicated hybrid motif 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Rhodanese/Cell cycle control phosphatase P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
CheY-binding domain of CheA CheW-like 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins HD-domain/PDEase-like 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
PDZ domain-like Ribosomal protein S5 domain 2-like 11
Homocysteine S-methyltransferase Methionine synthase activation domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
DNA primase core N-terminal domain of DnaB helicase 11
PYP-like sensor domain (PAS domain) Sporulation response regulatory protein Spo0B 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
Sensory domain-like Sporulation response regulatory protein Spo0B 11
RuvA domain 2-like BRCT domain 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
GAF domain-like GAF domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
PK C-terminal domain-like Phosphohistidine domain 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
ALDH-like Dehydroquinate synthase-like 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
RmlC-like cupins Homeodomain-like 11
Nucleotidyltransferase PHP domain-like 11
MetI-like Periplasmic binding protein-like II 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Tetrapyrrole methylase all-alpha NTP pyrophosphatases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
FliG FliG 11
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Translation proteins Translation proteins 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
Respiratory nitrate reductase 1 gamma chain alpha-helical ferredoxin 11
Flavoproteins Riboflavin synthase domain-like 11
Rhodanese/Cell cycle control phosphatase SirA-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
NTF2-like Penicillin binding protein dimerisation domain 11
PTS system fructose IIA component-like PTS IIb component 11
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Nucleotidyltransferase ACT-like 11
TGS-like ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins GAD domain-like 11
FAD/NAD(P)-binding domain Rhodanese/Cell cycle control phosphatase 11
TGS-like Class II aaRS and biotin synthetases 11
PRC-barrel domain PRC-barrel domain 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Ribonuclease H-like HCP-like 11
CarD-like TRCF domain-like 11
HprK N-terminal domain-like CBS-domain pair 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Homocysteine S-methyltransferase Methionine synthase domain 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain SirA-like 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
E set domains (Trans)glycosidases 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Glucose permease domain IIB Duplicated hybrid motif 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
Folate-binding domain Aminomethyltransferase beta-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases PTS system fructose IIA component-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Putative DNA-binding domain Antibiotic binding domain of TipA-like multidrug resistance regulators 11
TPR-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 11
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain Alkaline phosphatase-like 11
vWA-like vWA-like 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Formyltransferase FMT C-terminal domain-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Homocysteine S-methyltransferase FAD-linked oxidoreductase 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
GroES-like GroES-like 11
HD-domain/PDEase-like TGS-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
HprK N-terminal domain-like Thioesterase/thiol ester dehydrase-isomerase 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
L,D-transpeptidase pre-catalytic domain-like L,D-transpeptidase catalytic domain-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
GAF domain-like Nucleotide cyclase 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
Methionine synthase domain Methionine synthase activation domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
SH3-domain SH3-domain 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Nucleotide-binding domain Nucleotide-binding domain 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
Nucleic acid-binding proteins PheT/TilS domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Zn-dependent exopeptidases 11
Inosine monophosphate dehydrogenase (IMPDH) Inosine monophosphate dehydrogenase (IMPDH) 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
DNA clamp DNA clamp 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Penicillin-binding protein 2x (pbp-2x), c-terminal domain Penicillin-binding protein 2x (pbp-2x), c-terminal domain 11
"Winged helix" DNA-binding domain HRDC-like 11
AbrB/MazE/MraZ-like GAF domain-like 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
YrdC/RibB RibA-like 11
Hypothetical protein SAV1430 ARM repeat 11
Acyl-CoA N-acyltransferases (Nat) Carbon-nitrogen hydrolase 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
FAD/NAD(P)-binding domain SirA-like 11
Duplicated hybrid motif LysM domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
CheW-like CheY-like 11
LysM domain Barwin-like endoglucanases 11
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 11
Globin-like Riboflavin synthase domain-like 11
P-loop containing nucleoside triphosphate hydrolases PTS-regulatory domain, PRD 11
FAD/NAD-linked reductases, dimerisation (C-terminal) domain Rhodanese/Cell cycle control phosphatase 11
HprK N-terminal domain-like PEP carboxykinase-like 11
PHP domain-like Nucleic acid-binding proteins 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
PUA domain-like alpha/beta knot 11
FucI/AraA N-terminal and middle domains FucI/AraA C-terminal domain-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
TPR-like Hypothetical protein MPN330 11
lambda repressor-like DNA-binding domains S-adenosyl-L-methionine-dependent methyltransferases 11
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
alpha/beta-Hydrolases PUA domain-like 11
PTS system fructose IIA component-like PTS system IIB component-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Sensory domain-like HAMP domain-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Phospholipase D/nuclease P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Zn-dependent exopeptidases LysM domain 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
"Winged helix" DNA-binding domain PTS system fructose IIA component-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
HD-domain/PDEase-like ACT-like 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Sporulation response regulatory protein Spo0B ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Ribonuclease H-like RuvA domain 2-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
RuvA domain 2-like RuvA domain 2-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
SacY-like RNA-binding domain PTS-regulatory domain, PRD 11
Ribulose-phoshate binding barrel Ribulose-phoshate binding barrel 11
(Trans)glycosidases (Trans)glycosidases 11
CBS-domain pair Homeodomain-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleotidyltransferase TGS-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Hsp33 domain HSP33 redox switch-like 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NagB/RpiA/CoA transferase-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
4Fe-4S ferredoxins ARM repeat 11
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Barwin-like endoglucanases Tropomyosin 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases PTS system IIB component-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
CBS-domain pair Thioesterase/thiol ester dehydrase-isomerase 11
"Winged helix" DNA-binding domain C-terminal effector domain of the bipartite response regulators 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
DNA-glycosylase Nudix 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
HisI-like all-alpha NTP pyrophosphatases 11
TGS-like Class II aaRS ABD-related 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Prokaryotic SH3-related domain Prokaryotic SH3-related domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
P-loop containing nucleoside triphosphate hydrolases DNA methylase specificity domain 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
TGS-like ACT-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) Cytochrome c 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
UDP-Glycosyltransferase/glycogen phosphorylase Prokaryotic SH3-related domain 11
AhpD-like AhpD-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
RuvA domain 2-like JAB1/MPN domain 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Cystatin/monellin Cystatin/monellin 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
UROD/MetE-like UROD/MetE-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
PUA domain-like Nucleotidylyl transferase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 11
PTS-regulatory domain, PRD PTS system fructose IIA component-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
Homocysteine S-methyltransferase Dihydropteroate synthetase-like 11
Tex N-terminal region-like RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
PheT/TilS domain Putative DNA-binding domain 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Thiamin pyrophosphokinase, catalytic domain Thiamin pyrophosphokinase, substrate-binding domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
(Trans)glycosidases Class I glutamine amidotransferase-like 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Thioredoxin-like Six-hairpin glycosidases 11
"Winged helix" DNA-binding domain Periplasmic binding protein-like I 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
Thioredoxin-like Thioredoxin-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Nucleotide cyclase EAL domain-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Carbamate kinase-like PUA domain-like 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
HRDC-like C-terminal effector domain of the bipartite response regulators 11
Class II aaRS and biotin synthetases Translation proteins 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
CBS-domain pair ACT-like 11
Cupredoxins Cytochrome c 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
PK beta-barrel domain-like Phosphohistidine domain 11
NTF2-like beta-lactamase/transpeptidase-like 11
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Histidine-containing phosphotransfer domain, HPT domain CheW-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
AF1531-like Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
"Winged helix" DNA-binding domain HprK N-terminal domain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Macro domain-like Zn-dependent exopeptidases 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
KaiA/RbsU domain PP2C-like 11
Class II aaRS and biotin synthetases SufE/NifU 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Trigger factor ribosome-binding domain FKBP-like 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
PIN domain-like DNA/RNA polymerases 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
E set domains Glycosyl hydrolase domain 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Homocysteine S-methyltransferase Cobalamin (vitamin B12)-binding domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
PIN domain-like Ribonuclease H-like 11
Tex N-terminal region-like Ribonuclease H-like 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
PHP domain-like AF1531-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11

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