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Domain combination pairs in Burkholderia sp. RPE64

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

773 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1432
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5027
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 4616
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 374
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 346
Homeodomain-like Homeodomain-like 338
"Winged helix" DNA-binding domain GAF domain-like 292
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 281
Thioredoxin-like GST C-terminal domain-like 262
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 258
CheY-like C-terminal effector domain of the bipartite response regulators 243
GroES-like NAD(P)-binding Rossmann-fold domains 223
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 224
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 2215
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 2115
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 2115
P-loop containing nucleoside triphosphate hydrolases MOP-like 202
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 202
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 205
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 196
Actin-like ATPase domain Actin-like ATPase domain 196
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 193
Homodimeric domain of signal transducing histidine kinase CheY-like 1913
Thiolase-like Thiolase-like 181
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 189
Class I glutamine amidotransferase-like Homeodomain-like 172
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 167
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 165
"Winged helix" DNA-binding domain PLP-dependent transferases 161
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 167
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 151
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 142
Cytochrome c Cytochrome c 137
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 136
ISP domain Bet v1-like 132
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 136
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 136
2Fe-2S ferredoxin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 135
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 1311
Enolase N-terminal domain-like Enolase C-terminal domain-like 132
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 136
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 136
2Fe-2S ferredoxin-like Riboflavin synthase domain-like 135
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 134
TPR-like TPR-like 127
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 124
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1210
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 125
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 111
GAF domain-like Homodimeric domain of signal transducing histidine kinase 119
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 114
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 111
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 112
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 111
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 104
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 93
PYP-like sensor domain (PAS domain) CheY-like 97
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 95
P-loop containing nucleoside triphosphate hydrolases Translation proteins 95
"Winged helix" DNA-binding domain Chorismate lyase-like 82
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 83
Nucleotide cyclase EAL domain-like 85
CheY-like CheY-like 87
PYP-like sensor domain (PAS domain) Nucleotide cyclase 86
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 81
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 86
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 83
Phospholipase D/nuclease Phospholipase D/nuclease 75
CheY-like P-loop containing nucleoside triphosphate hydrolases 73
Homeodomain-like SIS domain 72
GAF domain-like PYP-like sensor domain (PAS domain) 75
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 73
(Trans)glycosidases Glycosyl hydrolase domain 64
Regulatory protein AraC Homeodomain-like 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 63
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 63
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 62
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
CheY-like Homeodomain-like 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
PreATP-grasp domain Rudiment single hybrid motif 63
GAF domain-like Homeodomain-like 53
PurM N-terminal domain-like PurM C-terminal domain-like 52
P-loop containing nucleoside triphosphate hydrolases PYP-like sensor domain (PAS domain) 55
GroES-like GroES-like 51
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 54
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 53
E set domains (Trans)glycosidases 53
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 53
HlyD-like secretion proteins HlyD-like secretion proteins 54
Alpha-L RNA-binding motif Pseudouridine synthase 52
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 53
Triger factor/SurA peptide-binding domain-like FKBP-like 54
GAF domain-like CheY-like 54
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 51
ParB/Sulfiredoxin KorB DNA-binding domain-like 51
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 53
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
TrkA C-terminal domain-like TrkA C-terminal domain-like 41
PYP-like sensor domain (PAS domain) EAL domain-like 43
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 42
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 43
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 44
GAF domain-like GAF domain-like 43
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 42
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 43
Translation proteins EF-G C-terminal domain-like 42
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 41
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 42
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 43
Trypsin-like serine proteases PDZ domain-like 43
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 42
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 43
E set domains Glycosyl hydrolase domain 42
CheY-like Histidine-containing phosphotransfer domain, HPT domain 44
EF-G C-terminal domain-like EF-G C-terminal domain-like 42
Lysozyme-like beta-lactamase/transpeptidase-like 44
MetI-like MetI-like 42
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 42
PYP-like sensor domain (PAS domain) Homeodomain-like 44
cAMP-binding domain-like "Winged helix" DNA-binding domain 41
ACT-like ACT-like 43
alpha/beta-Hydrolases alpha/beta-Hydrolases 41
Acetyl-CoA synthetase-like ACP-like 44
RmlC-like cupins Homeodomain-like 43
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 44
CBS-domain pair FAD-binding/transporter-associated domain-like 31
CoA-dependent acyltransferases ACP-like 33
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 33
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 32
PapD-like Periplasmic chaperone C-domain 31
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Galactose-binding domain-like Galactose-binding domain-like 32
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 33
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 31
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 31
HD-domain/PDEase-like Nucleotidyltransferase 33
Nucleic acid-binding proteins RuvA domain 2-like 33
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 33
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Single hybrid motif CoA-dependent acyltransferases 32
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 32
ClpP/crotonase 6-phosphogluconate dehydrogenase C-terminal domain-like 32
Succinyl-CoA synthetase domains Glutathione synthetase ATP-binding domain-like 32
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 33
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 31
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
P-loop containing nucleoside triphosphate hydrolases Homodimeric domain of signal transducing histidine kinase 33
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
EAL domain-like Sensory domain-like 31
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
FAD/NAD(P)-binding domain FMN-linked oxidoreductases 32
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
PLP-binding barrel Alanine racemase C-terminal domain-like 32
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 32
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 32
PDZ domain-like PDZ domain-like 32
CoA-dependent acyltransferases Acetyl-CoA synthetase-like 33
ACP-like ACP-like 33
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 31
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 33
ClpP/crotonase NAD(P)-binding Rossmann-fold domains 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 31
CoA-dependent acyltransferases CoA-dependent acyltransferases 33
cAMP-binding domain-like FAD/NAD(P)-binding domain 32
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 31
Protein kinase-like (PK-like) Homodimeric domain of signal transducing histidine kinase 22
Pentapeptide repeat-like Pentapeptide repeat-like 22
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 22
HD-domain/PDEase-like TGS-like 22
Calcium ATPase, transduction domain A HAD-like 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 21
Clc chloride channel CBS-domain pair 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 21
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 22
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 22
Aspartate receptor, ligand-binding domain Methyl-accepting chemotaxis protein (MCP) signaling domain 22
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 22
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
Single hybrid motif FAD/NAD(P)-binding domain 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Translation proteins ThrRS/AlaRS common domain 22
TPR-like C-terminal effector domain of the bipartite response regulators 22
CheY-like Nucleotide cyclase 22
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 21
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Histidine-containing phosphotransfer domain, HPT domain CheW-like 22
FAD/NAD(P)-binding domain Thioredoxin-like 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 22
Ribonuclease H-like GIY-YIG endonuclease 21
PreATP-grasp domain Single hybrid motif 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 22
Cyclophilin-like PH0987 N-terminal domain-like 22
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
Duplicated hybrid motif HPr-like 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 21
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Protein kinase-like (PK-like) PYP-like sensor domain (PAS domain) 22
Acetyl-CoA synthetase-like Acetyl-CoA synthetase-like 22
Nucleotidyltransferase TGS-like 22
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 22
L30e-like alpha/beta knot 21
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 22
HPr-like Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Phage tail proteins Phage tail proteins 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
Folate-binding domain Aminomethyltransferase beta-barrel domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Ribonuclease H-like DNA/RNA polymerases 22
Galactose-binding domain-like (Trans)glycosidases 22
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase 22
Protein kinase-like (PK-like) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Single hybrid motif Single hybrid motif 22
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 21
Nucleotidyltransferase ACT-like 22
Nqo1 middle domain-like Nqo1C-terminal domain-like 22
Glutathione synthetase ATP-binding domain-like Single hybrid motif 22
HAD-like Calcium ATPase, transmembrane domain M 22
Protein kinase-like (PK-like) GAF domain-like 22
MoeA N-terminal region -like MoeA C-terminal domain-like 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
alpha-helical ferredoxin Nucleotide-binding domain 22
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 21
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 21
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 22
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Translation proteins Ribosomal protein S5 domain 2-like 21
Duplicated hybrid motif Phosphoenolpyruvate/pyruvate domain 22
GAF domain-like Nucleotide cyclase 22
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 22
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 21
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 22
Phage tail proteins gp5 N-terminal domain-like 22
lambda repressor-like DNA-binding domains RmlC-like cupins 22
Duplicated hybrid motif Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain 22
PK beta-barrel domain-like PK C-terminal domain-like 22
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
CheW-like CheY-like 22
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 22
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 22
HPr-like Phosphohistidine domain 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
HPr-like Phosphoenolpyruvate/pyruvate domain 22
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 22
Nucleotide-diphospho-sugar transferases RmlC-like cupins 21
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 22
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
Glucose permease domain IIB Glucose permease domain IIB 21
FMN-binding split barrel UbiD C-terminal domain-like 22
"Winged helix" DNA-binding domain Actin-like ATPase domain 21
HD-domain/PDEase-like ACT-like 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
ACT-like Formyltransferase 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Duplicated hybrid motif Phosphohistidine domain 22
Tropomyosin P-loop containing nucleoside triphosphate hydrolases 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
SpoIIaa-like cAMP-binding domain-like 21
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 22
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
Oxidoreductase molybdopterin-binding domain E set domains 22
Formyltransferase FMT C-terminal domain-like 21
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 22
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Rudiment single hybrid motif Single hybrid motif 22
CheY-like Methylesterase CheB, C-terminal domain 21
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
Cobalamin (vitamin B12)-dependent enzymes Cobalamin (vitamin B12)-binding domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
FAD-linked oxidoreductase ALDH-like 11
Putative DNA-binding domain Translation proteins 11
RuvA domain 2-like BRCT domain 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
Ricin B-like lectins Integrin alpha N-terminal domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase domain 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Zn-dependent exopeptidases vWA-like 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
ARM repeat ARM repeat 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Thioredoxin-like DinB/YfiT-like putative metalloenzymes 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Cyclophilin-like Cyclophilin-like 11
ISP domain FAD/NAD(P)-binding domain 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
alpha/beta-Hydrolases NTF2-like 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
FMN-linked oxidoreductases 4Fe-4S ferredoxins 11
FAD-linked reductases, C-terminal domain Thioredoxin-like 11
Nucleotide-diphospho-sugar transferases PilZ domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Thioredoxin-like Acyl-CoA N-acyltransferases (Nat) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
PIN domain-like Ribonuclease H-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
Nucleotidyltransferase Nucleotidyltransferase 11
"Winged helix" DNA-binding domain MOP-like 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Periplasmic binding protein-like II ACT-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
ClpP/crotonase ClpP/crotonase 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
FliG FliG 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Actin-like ATPase domain HD-domain/PDEase-like 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 11
LigB-like LigA subunit of an aromatic-ring-opening dioxygenase LigAB 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
CarD-like TRCF domain-like 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
cAMP-binding domain-like ABC transporter transmembrane region 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
YajQ-like YajQ-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Metalloproteases ("zincins"), catalytic domain YVTN repeat-like/Quinoprotein amine dehydrogenase 11
TGS-like ThrRS/AlaRS common domain 11
YrdC/RibB RibA-like 11
Macro domain-like Zn-dependent exopeptidases 11
alpha-helical ferredoxin FAD/NAD(P)-binding domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Heme-dependent catalase-like Class I glutamine amidotransferase-like 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
FMN-binding split barrel 2Fe-2S ferredoxin-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
PK beta-barrel domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
FMN-binding split barrel Riboflavin synthase domain-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Bacterial muramidases Lysozyme-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
PK beta-barrel domain-like 2Fe-2S ferredoxin-like 11
2Fe-2S ferredoxin-like Bet v1-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
vWA-like TPR-like 11
Periplasmic binding protein-like II Cytochrome c 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Succinyl-CoA synthetase domains Acyl-CoA N-acyltransferases (Nat) 11
Periplasmic binding protein-like II NosL/MerB-like 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Methylated DNA-protein cysteine methyltransferase domain 11
Radical SAM enzymes RuvA domain 2-like 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
SMAD/FHA domain SMAD/FHA domain 11
cAMP-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
Aldolase post-HMGL domain-like 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Adhesin YadA, collagen-binding domain Pili subunits 11
Tex N-terminal region-like Ribonuclease H-like 11
cAMP-binding domain-like cAMP-binding domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
2Fe-2S ferredoxin-like ADC-like 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
PK beta-barrel domain-like Riboflavin synthase domain-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
HlyD-like secretion proteins Outer membrane efflux proteins (OEP) 11
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
Putative DNA-binding domain Citrate synthase 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Ricin B-like lectins E set domains 11
LysM domain Duplicated hybrid motif 11
gp5 N-terminal domain-like Phage fibre proteins 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
Cupredoxins Cytochrome c 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
PurS-like PurM C-terminal domain-like 11
Cupredoxins OmpA-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Acetyl-CoA synthetase-like NAD(P)-binding Rossmann-fold domains 11
4'-phosphopantetheinyl transferase 4'-phosphopantetheinyl transferase 11
Nucleotidylyl transferase tRNA-binding arm 11
PurS-like FGAM synthase PurL, linker domain 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Periplasmic binding protein-like II CheY-like 11
PRC-barrel domain PRC-barrel domain 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
SAM/Pointed domain TPR-like 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
MOP-like MOP-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Phage tail proteins Phage fibre proteins 11
P-loop containing nucleoside triphosphate hydrolases Adenine nucleotide alpha hydrolases-like 11
Acetyl-CoA synthetase-like alpha/beta-Hydrolases 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
PurS-like Class I glutamine amidotransferase-like 11
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
ISP domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
N-acetylmuramoyl-L-alanine amidase-like PGBD-like 11
GroEL equatorial domain-like GroEL-intermediate domain like 11
Tetrapyrrole methylase S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotide-diphospho-sugar transferases EspE N-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
DNA clamp DNA clamp 11
Cytochrome c oxidase subunit II-like, transmembrane region OmpA-like 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Homeodomain-like Methylated DNA-protein cysteine methyltransferase, C-terminal domain 11
SAM/Pointed domain P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Lysozyme-like 11
GroEL-intermediate domain like GroEL apical domain-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
Pseudouridine synthase PUA domain-like 11
RuvA domain 2-like RuvA domain 2-like 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
Carbamate kinase-like PUA domain-like 11
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 11
Ribonuclease H-like RuvA domain 2-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
PIN domain-like DNA/RNA polymerases 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
Homeodomain-like Ribonuclease H-like 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Cobalamin (vitamin B12)-binding domain Radical SAM enzymes 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
CheY-binding domain of CheA CheW-like 11
Nucleotide cyclase TPR-like 11
Class II aaRS and biotin synthetases Translation proteins 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Homeodomain-like Probable bacterial effector-binding domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Carbohydrate-binding domain beta-N-acetylhexosaminidase-like domain 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
ACP-like alpha/beta-Hydrolases 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
H-NS histone-like proteins H-NS histone-like proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
PPK N-terminal domain-like PHP14-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
UDP-Glycosyltransferase/glycogen phosphorylase Nucleotide-diphospho-sugar transferases 11
Nucleic acid-binding proteins BRCT domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
Cysteine proteinases TPR-like 11
FMN-binding split barrel Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
RNase III domain-like dsRNA-binding domain-like 11
Thioredoxin-like Thioredoxin-like 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Actin-like ATPase domain SIS domain 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Sensory domain-like Nucleotide cyclase 11
HAMP domain-like PYP-like sensor domain (PAS domain) 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
ClpP/crotonase NfeD domain-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 11
Ricin B-like lectins Galactose oxidase, central domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
ABC transporter involved in vitamin B12 uptake, BtuC ABC transporter involved in vitamin B12 uptake, BtuC 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Folate-binding domain 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
PH0987 N-terminal domain-like Single hybrid motif 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
Hsp33 domain HSP33 redox switch-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Phase 1 flagellin Phase 1 flagellin 11
Periplasmic binding protein-like II Homodimeric domain of signal transducing histidine kinase 11
CheC-like Surface presentation of antigens (SPOA) 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Periplasmic binding protein-like II Histidine-containing phosphotransfer domain, HPT domain 11
PPK N-terminal domain-like Phospholipase D/nuclease 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
EAL domain-like HD-domain/PDEase-like 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
lambda repressor-like DNA-binding domains Cyanase C-terminal domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Chorismate mutase II ACT-like 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
PUA domain-like alpha/beta knot 11
PreATP-grasp domain Cyclophilin-like 11
Protease propeptides/inhibitors Subtilisin-like 11
Galactose mutarotase-like (Trans)glycosidases 11
Cytochrome c OmpA-like 11
TATA-box binding protein-like DNA-glycosylase 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Translation proteins PRC-barrel domain 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
ACP-like NAD(P)-binding Rossmann-fold domains 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
CbiG N-terminal domain-like Tetrapyrrole methylase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
PrpR receptor domain-like Homeodomain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Phosphoenolpyruvate/pyruvate domain Nucleotide-diphospho-sugar transferases 11
CoA-dependent acyltransferases NAD(P)-binding Rossmann-fold domains 11
Lysozyme-like LysM domain 11
Adenine nucleotide alpha hydrolases-like Homodimeric domain of signal transducing histidine kinase 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
FKBP-like FKBP-like 11
Translation proteins "Winged helix" DNA-binding domain 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 11
Tex N-terminal region-like RuvA domain 2-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Ribonuclease H-like Nucleic acid-binding proteins 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Zinc beta-ribbon Prokaryotic SH3-related domain 11
ALDH-like ALDH-like 11
4Fe-4S ferredoxins ADC-like 11
SAM/Pointed domain Nucleotide cyclase 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Chorismate mutase II Periplasmic binding protein-like II 11
Adenine nucleotide alpha hydrolases-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
Single hybrid motif alpha/beta-Hydrolases 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
alpha/beta-Hydrolases C-terminal effector domain of the bipartite response regulators 11
beta-N-acetylhexosaminidase-like domain (Trans)glycosidases 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
Molybdenum cofactor-binding domain Cytochrome c 11
Globin-like Riboflavin synthase domain-like 11
TGS-like Class II aaRS and biotin synthetases 11
UROD/MetE-like UROD/MetE-like 11
DNA-glycosylase Nudix 11
PreATP-grasp domain PreATP-grasp domain 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Methionine synthase domain Methionine synthase activation domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Sensory domain-like Histidine-containing phosphotransfer domain, HPT domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Galactose oxidase, central domain E set domains 11
Carbohydrate-binding domain (Trans)glycosidases 11
TGS-like ACT-like 11
GAF domain-like EAL domain-like 11
PDZ domain-like ClpP/crotonase 11
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 11
Peptidase/esterase 'gauge' domain alpha/beta-Hydrolases 11
YjeF N-terminal domain-like Ribokinase-like 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Translation proteins Translation proteins 11
Nucleic acid-binding proteins GAD domain-like 11
HMA, heavy metal-associated domain HAD-like 11
Thioredoxin-like TPR-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
PilZ domain-like PilZ domain-like 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
PurS-like PurM N-terminal domain-like 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Cytochrome P450 Riboflavin synthase domain-like 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Periplasmic binding protein-like II Periplasmic binding protein-like II 11
Carbamate kinase-like ACT-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
(Trans)glycosidases (Trans)glycosidases 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
Zinc beta-ribbon DNA primase core 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
Adenine nucleotide alpha hydrolases-like GAF domain-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Rudiment single hybrid motif Cyclophilin-like 11
Ribbon-helix-helix ALDH-like 11
TGS-like Class II aaRS ABD-related 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes PLP-dependent transferases 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
Cyclophilin-like Single hybrid motif 11
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain "Winged helix" DNA-binding domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Caspase-like C-type lectin-like 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
MOSC N-terminal domain-like PK beta-barrel domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
PLP-dependent transferases PLP-dependent transferases 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 11
Sensory domain-like CheY-like 11
Actin-like ATPase domain Homeodomain-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
PHP14-like Phospholipase D/nuclease 11

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