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Domain combination pairs in Ralstonia eutropha JMP134

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

791 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
"Winged helix" DNA-binding domain Periplasmic binding protein-like II 1612
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 683
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4824
"Winged helix" DNA-binding domain GAF domain-like 412
GroES-like NAD(P)-binding Rossmann-fold domains 382
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 324
CheY-like C-terminal effector domain of the bipartite response regulators 323
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 3115
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 295
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 292
Thiolase-like Thiolase-like 251
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 233
P-loop containing nucleoside triphosphate hydrolases Homeodomain-like 2312
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 229
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 224
Homeodomain-like Homeodomain-like 216
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 217
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 206
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 208
Thioredoxin-like GST C-terminal domain-like 203
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheY-like 1916
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 196
Ferredoxin reductase-like, C-terminal NADP-linked domain 2Fe-2S ferredoxin-like 174
Riboflavin synthase domain-like 2Fe-2S ferredoxin-like 174
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1714
Homodimeric domain of signal transducing histidine kinase CheY-like 1613
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 166
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 166
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 166
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 166
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 162
Actin-like ATPase domain Actin-like ATPase domain 155
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 1512
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 154
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 157
"Winged helix" DNA-binding domain Chorismate lyase-like 153
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 155
ISP domain Bet v1-like 152
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 144
cAMP-binding domain-like "Winged helix" DNA-binding domain 143
PYP-like sensor domain (PAS domain) Nucleotide cyclase 138
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 126
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 125
PreATP-grasp domain Rudiment single hybrid motif 125
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 125
Cytochrome c Cytochrome c 125
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 129
Class I glutamine amidotransferase-like Homeodomain-like 111
"Winged helix" DNA-binding domain PLP-dependent transferases 112
Enolase N-terminal domain-like Enolase C-terminal domain-like 112
P-loop containing nucleoside triphosphate hydrolases Translation proteins 116
Nucleotide cyclase EAL domain-like 118
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 104
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 102
PYP-like sensor domain (PAS domain) CheY-like 108
P-loop containing nucleoside triphosphate hydrolases TPR-like 105
2Fe-2S ferredoxin-like CO dehydrogenase ISP C-domain like 104
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 101
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 103
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 102
NAD(P)-binding Rossmann-fold domains Glutathione synthetase ATP-binding domain-like 91
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 91
Phospholipase D/nuclease Phospholipase D/nuclease 95
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 94
CO dehydrogenase molybdoprotein N-domain-like Molybdenum cofactor-binding domain 94
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 88
CheY-like P-loop containing nucleoside triphosphate hydrolases 83
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 81
Calcium ATPase, transduction domain A HAD-like 86
Rudiment single hybrid motif Single hybrid motif 84
PYP-like sensor domain (PAS domain) EAL domain-like 86
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 85
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 84
PreATP-grasp domain Single hybrid motif 84
Glutathione synthetase ATP-binding domain-like Single hybrid motif 84
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 86
HAD-like Calcium ATPase, transmembrane domain M 86
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 84
FAD-binding/transporter-associated domain-like CO dehydrogenase flavoprotein C-terminal domain-like 72
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 74
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 74
ClpP/crotonase ClpP/crotonase 73
CheY-like Homeodomain-like 72
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 61
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 64
Translation proteins EF-G C-terminal domain-like 63
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 61
Homeodomain-like SIS domain 62
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 64
Histidine-containing phosphotransfer domain, HPT domain CheY-like 66
Triger factor/SurA peptide-binding domain-like FKBP-like 64
P-loop containing nucleoside triphosphate hydrolases MOP-like 61
Lysozyme-like beta-lactamase/transpeptidase-like 64
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 63
TPR-like TPR-like 65
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 63
Alpha-L RNA-binding motif Pseudouridine synthase 53
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 52
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 52
PYP-like sensor domain (PAS domain) Histidine-containing phosphotransfer domain, HPT domain 55
HlyD-like secretion proteins HlyD-like secretion proteins 53
TPR-like C-terminal effector domain of the bipartite response regulators 53
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 52
Thiamin diphosphate-binding fold (THDP-binding) Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 53
Nucleotide cyclase TPR-like 52
Homodimeric domain of signal transducing histidine kinase Histidine-containing phosphotransfer domain, HPT domain 55
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 52
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 52
EF-G C-terminal domain-like EF-G C-terminal domain-like 52
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 53
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 42
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 42
RmlC-like cupins Homeodomain-like 42
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 44
GAF domain-like Homeodomain-like 43
PYP-like sensor domain (PAS domain) Homeodomain-like 43
ParB/Sulfiredoxin KorB DNA-binding domain-like 42
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
Regulatory protein AraC Homeodomain-like 43
PLP-binding barrel Alanine racemase C-terminal domain-like 42
4Fe-4S ferredoxins ADC-like 42
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 43
PurM N-terminal domain-like PurM C-terminal domain-like 42
Nqo1 middle domain-like Nqo1C-terminal domain-like 43
GAF domain-like P-loop containing nucleoside triphosphate hydrolases 43
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 42
PYP-like sensor domain (PAS domain) P-loop containing nucleoside triphosphate hydrolases 43
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 42
4Fe-4S ferredoxins Formate dehydrogenase/DMSO reductase, domains 1-3 42
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 43
ADC-like 2Fe-2S ferredoxin-like 42
Folate-binding domain Aminomethyltransferase beta-barrel domain 42
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 43
CheY-like CheY-like 43
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 41
Formate dehydrogenase/DMSO reductase, domains 1-3 2Fe-2S ferredoxin-like 42
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 42
GroES-like GroES-like 41
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 42
P-loop containing nucleoside triphosphate hydrolases Hypothetical protein YjiA, C-terminal domain 41
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 42
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 44
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 41
Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 32
Nucleotidyltransferase HD-domain/PDEase-like 32
CheY-like Methylesterase CheB, C-terminal domain 32
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 32
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 31
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
Pectin lyase-like Autotransporter 32
ACT-like ACT-like 33
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 31
Trypsin-like serine proteases PDZ domain-like 32
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 32
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 32
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 32
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 31
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 31
TrkA C-terminal domain-like TrkA C-terminal domain-like 31
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
MetI-like MetI-like 31
FMN-linked oxidoreductases FAD/NAD(P)-binding domain 33
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 32
Nucleic acid-binding proteins RuvA domain 2-like 33
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
Single hybrid motif CoA-dependent acyltransferases 32
Translation proteins Ribosomal protein S5 domain 2-like 31
Phage tail proteins gp5 N-terminal domain-like 32
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 32
Thioesterase/thiol ester dehydrase-isomerase Thioesterase/thiol ester dehydrase-isomerase 31
HD-domain/PDEase-like ACT-like 32
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 33
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 33
Cupredoxins Cytochrome c 32
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 32
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
Nucleotidyltransferase ACT-like 32
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 32
CheW-like CheY-like 33
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 32
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
Aconitase iron-sulfur domain LeuD/IlvD-like 32
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
Nucleotide-diphospho-sugar transferases PilZ domain-like 32
Phage tail proteins Phage tail proteins 32
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 32
E set domains (Trans)glycosidases 33
CBS-domain pair FAD-binding/transporter-associated domain-like 31
Aldolase post-HMGL domain-like 33
HMA, heavy metal-associated domain HAD-like 33
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 32
Cyclophilin-like PH0987 N-terminal domain-like 33
PDZ domain-like PDZ domain-like 32
(Trans)glycosidases Glycosyl hydrolase domain 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 31
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 32
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 31
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
GroEL-intermediate domain like GroEL apical domain-like 21
tRNA-binding arm Class II aaRS and biotin synthetases 21
Heme-dependent peroxidases Heme-dependent peroxidases 21
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 21
NAD(P)-binding Rossmann-fold domains ACT-like 22
CheY-like Nucleotide cyclase 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
Aspartate/glutamate racemase Aspartate/glutamate racemase 21
GAF domain-like Nucleotide cyclase 22
FAD-binding/transporter-associated domain-like alpha-helical ferredoxin 22
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 22
Formyltransferase FMT C-terminal domain-like 21
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
Nucleotidyltransferase Poly A polymerase C-terminal region-like 21
Translation proteins ThrRS/AlaRS common domain 22
GreA transcript cleavage protein, N-terminal domain FKBP-like 21
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 21
Glutathione synthetase ATP-binding domain-like ClpP/crotonase 21
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 22
PPK N-terminal domain-like Phospholipase D/nuclease 22
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 21
Clc chloride channel CBS-domain pair 21
PapD-like Periplasmic chaperone C-domain 22
2Fe-2S ferredoxin-like alpha-helical ferredoxin 21
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 21
MFS general substrate transporter S-adenosyl-L-methionine-dependent methyltransferases 22
PreATP-grasp domain ClpP/crotonase 21
Ligand-binding domain in the NO signalling and Golgi transport P-loop containing nucleoside triphosphate hydrolases 22
Oxidoreductase molybdopterin-binding domain E set domains 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
GroEL equatorial domain-like GroEL apical domain-like 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Nucleotidyltransferase TGS-like 21
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
Methylesterase CheB, C-terminal domain PYP-like sensor domain (PAS domain) 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 21
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 21
E set domains Glycosyl hydrolase domain 22
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Galactose mutarotase-like E set domains 21
lambda repressor-like DNA-binding domains RmlC-like cupins 21
Thioredoxin-like Nqo1 FMN-binding domain-like 22
Metallo-hydrolase/oxidoreductase SCP-like 22
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 21
L30e-like alpha/beta knot 21
Adhesin YadA, collagen-binding domain Pili subunits 22
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, catalytic domain 22
Glutathione synthetase ATP-binding domain-like MurD-like peptide ligases, peptide-binding domain 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 22
HAMP domain-like PYP-like sensor domain (PAS domain) 22
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 21
Thioredoxin-like Nqo1 middle domain-like 22
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 21
GroEL equatorial domain-like GroEL-intermediate domain like 21
Adhesin YadA, collagen-binding domain Adhesin YadA, collagen-binding domain 22
beta-Galactosidase/glucuronidase domain beta-Galactosidase/glucuronidase domain 22
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 21
TGS-like ACT-like 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
ACT-like Formyltransferase 21
Single hybrid motif ClpP/crotonase 21
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 21
MOP-like MOP-like 22
Cytochrome c C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 21
MoeA N-terminal region -like MoeA C-terminal domain-like 21
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Methylesterase CheB, C-terminal domain Chemotaxis receptor methyltransferase CheR, N-terminal domain 22
Flavoproteins Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 21
NAD(P)-binding Rossmann-fold domains Isocitrate/Isopropylmalate dehydrogenase-like 21
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 21
Chemotaxis receptor methyltransferase CheR, N-terminal domain PYP-like sensor domain (PAS domain) 22
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 21
GAF domain-like Homodimeric domain of signal transducing histidine kinase 22
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 21
FAD-linked oxidases, C-terminal domain alpha-helical ferredoxin 22
PPK N-terminal domain-like PHP14-like 22
NagB/RpiA/CoA transferase-like 4Fe-4S ferredoxins 21
Cyclophilin-like Cyclophilin-like 22
S-adenosyl-L-methionine-dependent methyltransferases PYP-like sensor domain (PAS domain) 22
Ribonuclease H-like DNA/RNA polymerases 22
Ligand-binding domain in the NO signalling and Golgi transport Homeodomain-like 22
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 22
beta-Galactosidase/glucuronidase domain (Trans)glycosidases 22
Quinoprotein alcohol dehydrogenase-like Cytochrome c 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
Rudiment single hybrid motif ClpP/crotonase 21
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 21
PHP14-like Phospholipase D/nuclease 22
HD-domain/PDEase-like TGS-like 21
PYP-like sensor domain (PAS domain) GAF domain-like 22
Flavoproteins Riboflavin synthase domain-like 22
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
FAD/NAD(P)-binding domain HI0933 insert domain-like 21
Aminoacid dehydrogenase-like, N-terminal domain Isocitrate/Isopropylmalate dehydrogenase-like 21
GAF domain-like EAL domain-like 22
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 22
PK beta-barrel domain-like PK C-terminal domain-like 21
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 22
Methylesterase CheB, C-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 22
FMN-binding split barrel UbiD C-terminal domain-like 22
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 22
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 21
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 21
YrdC/RibB RibA-like 21
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 21
Fumarylacetoacetate hydrolase, FAH, N-terminal domain FAH 21
CoA-transferase family III (CaiB/BaiF) CoA-transferase family III (CaiB/BaiF) 21
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 22
Thioredoxin-like Nqo1C-terminal domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 22
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Molybdenum cofactor-binding domain Cytochrome c 11
EAL domain-like HD-domain/PDEase-like 11
Acetyl-CoA synthetase-like Thioesterase/thiol ester dehydrase-isomerase 11
YbaK/ProRS associated domain Class II aaRS ABD-related 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Rudiment single hybrid motif post-HMGL domain-like 11
KorB DNA-binding domain-like C-terminal domain of transcriptional repressors 11
PurM N-terminal domain-like Class I glutamine amidotransferase-like 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
Molybdenum cofactor-binding domain Bet v1-like 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Galactose-binding domain-like (Trans)glycosidases 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Ferritin-like HAD-like 11
Class II aaRS and biotin synthetases Translation proteins 11
PH0987 N-terminal domain-like Single hybrid motif 11
Phage tail proteins Phage fibre proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Rudiment single hybrid motif Cyclophilin-like 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
DNA clamp DNA clamp 11
FKBP-like FKBP-like 11
Methylesterase CheB, C-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Ribosomal protein L6 Ribosomal protein L6 11
ParB/Sulfiredoxin S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphohistidine domain 11
Periplasmic binding protein-like II MetI-like 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
HD-domain/PDEase-like GAF domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
CBS-domain pair Nucleotide cyclase 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
PurS-like PurM N-terminal domain-like 11
CBS-domain pair PYP-like sensor domain (PAS domain) 11
Pili subunits Pili subunits 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Putative DNA-binding domain CheY-like 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Tex N-terminal region-like Ribonuclease H-like 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Methionine synthase domain Methionine synthase activation domain-like 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
Resolvase-like Homeodomain-like 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Aldolase Single hybrid motif 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Cytochrome P450 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
cAMP-binding domain-like ABC transporter transmembrane region 11
Dihydropteroate synthetase-like Cobalamin (vitamin B12)-binding domain 11
lambda repressor-like DNA-binding domains LexA/Signal peptidase 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
Class II aaRS and biotin synthetases GAD domain-like 11
CBS-domain pair EAL domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
RuvA domain 2-like BRCT domain 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
TGS-like Class II aaRS ABD-related 11
Carbamate kinase-like PUA domain-like 11
Trigger factor ribosome-binding domain FKBP-like 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Glutathione synthetase ATP-binding domain-like PH0987 N-terminal domain-like 11
Zinc beta-ribbon DNA primase core 11
Translation proteins PRC-barrel domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases WD40 repeat-like 11
Periplasmic binding protein-like II Lysozyme-like 11
4Fe-4S ferredoxins Riboflavin synthase domain-like 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Glutathione synthetase ATP-binding domain-like Aldolase 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
lambda repressor-like DNA-binding domains P-loop containing nucleoside triphosphate hydrolases 11
PurM C-terminal domain-like Class I glutamine amidotransferase-like 11
2Fe-2S ferredoxin-like CO dehydrogenase flavoprotein C-terminal domain-like 11
Nucleotidyltransferase substrate binding subunit/domain HD-domain/PDEase-like 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Methionine synthase domain Cobalamin (vitamin B12)-binding domain 11
Nucleotidyltransferase substrate binding subunit/domain ACT-like 11
RuvA domain 2-like RuvA domain 2-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
(Phosphotyrosine protein) phosphatases II FAD/NAD(P)-binding domain 11
Hsp33 domain HSP33 redox switch-like 11
RNase III domain-like dsRNA-binding domain-like 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
Bacterial muramidases Lysozyme-like 11
PrpR receptor domain-like PYP-like sensor domain (PAS domain) 11
Dihydropteroate synthetase-like Methionine synthase domain 11
Translation proteins Translation proteins 11
DHS-like NAD/FAD-binding domain CBS-domain pair 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
HprK N-terminal domain-like PEP carboxykinase-like 11
Homeodomain-like TPR-like 11
Ribonuclease H-like RuvA domain 2-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
Ribbon-helix-helix ALDH-like 11
DNA topoisomerase I domain DNA breaking-rejoining enzymes 11
HAMP domain-like Histidine-containing phosphotransfer domain, HPT domain 11
Homodimeric domain of signal transducing histidine kinase Homodimeric domain of signal transducing histidine kinase 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors NTF2-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
vWA-like TPR-like 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
DnaK suppressor protein DksA, alpha-hairpin domain Glucocorticoid receptor-like (DNA-binding domain) 11
2Fe-2S ferredoxin-like Bet v1-like 11
Carbon-nitrogen hydrolase Adenine nucleotide alpha hydrolases-like 11
Chorismate mutase II Periplasmic binding protein-like II 11
ABC transporter transmembrane region CheY-like 11
Methylesterase CheB, C-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nudix Metallo-hydrolase/oxidoreductase 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
YjeF N-terminal domain-like Ribokinase-like 11
"Winged helix" DNA-binding domain Actin-like ATPase domain 11
Cobalamin (vitamin B12)-binding domain Cobalamin (vitamin B12)-dependent enzymes 11
gp5 N-terminal domain-like Phage fibre proteins 11
YefM-like RelE-like 11
Macro domain-like Zn-dependent exopeptidases 11
FGAM synthase PurL, linker domain Class I glutamine amidotransferase-like 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
CO dehydrogenase molybdoprotein N-domain-like Cytochrome c 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
YajQ-like YajQ-like 11
CO dehydrogenase ISP C-domain like CO dehydrogenase flavoprotein C-terminal domain-like 11
FGAM synthase PurL, linker domain PurM N-terminal domain-like 11
Nucleic acid-binding proteins GAD domain-like 11
Chorismate mutase II ACT-like 11
FAD-linked oxidoreductase ALDH-like 11
PreATP-grasp domain Aldolase 11
P-loop containing nucleoside triphosphate hydrolases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PreATP-grasp domain Methylglyoxal synthase-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
TrkA C-terminal domain-like FAD-binding/transporter-associated domain-like 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
cAMP-binding domain-like cAMP-binding domain-like 11
Single hybrid motif Single hybrid motif 11
Tex N-terminal region-like Nucleic acid-binding proteins 11
Homeodomain-like C-terminal effector domain of the bipartite response regulators 11
MFS general substrate transporter Glycerol-3-phosphate (1)-acyltransferase 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
DsbC/DsbG N-terminal domain-like Thioredoxin-like 11
(Trans)glycosidases Protein kinase-like (PK-like) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain Homodimeric domain of signal transducing histidine kinase 11
Tex N-terminal region-like RuvA domain 2-like 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
TGS-like Class II aaRS and biotin synthetases 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase HSP90 C-terminal domain 11
Actin-like ATPase domain HD-domain/PDEase-like 11
Single hybrid motif FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Galactose-binding domain-like beta-Galactosidase/glucuronidase domain 11
4Fe-4S ferredoxins Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Riboflavin synthase domain-like 11
4Fe-4S ferredoxins Respiratory nitrate reductase 1 gamma chain 11
(Trans)glycosidases (Trans)glycosidases 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
ABC transporter transmembrane region ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
Class I glutamine amidotransferase-like Glycoside hydrolase/deacetylase 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Cupredoxins Cupredoxins 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Glutathione synthetase ATP-binding domain-like post-HMGL domain-like 11
FabD/lysophospholipase-like FabD/lysophospholipase-like 11
Nucleotidylyl transferase tRNA-binding arm 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
FAD/NAD(P)-binding domain Nitrite and sulphite reductase 4Fe-4S domain-like 11
Homeodomain-like TATA-box binding protein-like 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain CheY-like 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
S-adenosyl-L-methionine-dependent methyltransferases Homodimeric domain of signal transducing histidine kinase 11
FGAM synthase PurL, linker domain PurM C-terminal domain-like 11
Globin-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
GIY-YIG endonuclease RuvA domain 2-like 11
PIN domain-like DNA/RNA polymerases 11
Nucleotidyltransferase Nucleotidyltransferase 11
TK C-terminal domain-like Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 11
2Fe-2S ferredoxin-like FAD-binding/transporter-associated domain-like 11
Putative DNA-binding domain P-loop containing nucleoside triphosphate hydrolases 11
FliG FliG 11
Lysozyme-like LysM domain 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Protease propeptides/inhibitors Subtilisin-like 11
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 11
lambda repressor-like DNA-binding domains PYP-like sensor domain (PAS domain) 11
PreATP-grasp domain PreATP-grasp domain 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Putative DNA-binding domain Translation proteins 11
Metalloproteases ("zincins"), catalytic domain PDZ domain-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
Periplasmic binding protein-like II ACT-like 11
S-adenosyl-L-methionine-dependent methyltransferases ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
PreATP-grasp domain Cyclophilin-like 11
FAD/NAD(P)-binding domain Nitrite/Sulfite reductase N-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
P-loop containing nucleoside triphosphate hydrolases ACT-like 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
TATA-box binding protein-like DNA-glycosylase 11
Pseudouridine synthase PUA domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
CheY-binding domain of CheA CheW-like 11
Ribbon-helix-helix N-terminal domain of bifunctional PutA protein 11
PheT/TilS domain Putative DNA-binding domain 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Cobalamin (vitamin B12)-binding domain P-loop containing nucleoside triphosphate hydrolases 11
lambda integrase-like, N-terminal domain DNA breaking-rejoining enzymes 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
S-adenosyl-L-methionine-dependent methyltransferases UDP-Glycosyltransferase/glycogen phosphorylase 11
Rudiment single hybrid motif Aldolase 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
Cobalamin (vitamin B12)-binding domain Methionine synthase activation domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
FAD-linked reductases, C-terminal domain 4Fe-4S ferredoxins 11
Zinc beta-ribbon DNA primase DnaG, C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Cytochrome P450 2Fe-2S ferredoxin-like 11
CarD-like TRCF domain-like 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) TATA-box binding protein-like 11
alpha-helical ferredoxin Nucleotide-binding domain 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Globin-like Riboflavin synthase domain-like 11
Epsilon subunit of F1F0-ATP synthase N-terminal domain Epsilon subunit of F1F0-ATP synthase C-terminal domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain ACT-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
FAD/NAD(P)-binding domain Aminomethyltransferase beta-barrel domain 11
Sigma2 domain of RNA polymerase sigma factors NTF2-like 11
Nucleic acid-binding proteins Rad51 N-terminal domain-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
MFS general substrate transporter MFS general substrate transporter 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Adenine nucleotide alpha hydrolases-like 11
FAD-linked reductases, C-terminal domain SCP-like 11
Formate dehydrogenase/DMSO reductase, domains 1-3 Ferredoxin reductase-like, C-terminal NADP-linked domain 11
PGBD-like L,D-transpeptidase catalytic domain-like 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
"Winged helix" DNA-binding domain LexA/Signal peptidase 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Cytochrome P450 Riboflavin synthase domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Nucleotide cyclase SMAD/FHA domain 11
Terpenoid cyclases/Protein prenyltransferases Terpenoid cyclases/Protein prenyltransferases 11
Carbamate kinase-like Acyl-CoA N-acyltransferases (Nat) 11
FAD/NAD(P)-binding domain 4Fe-4S ferredoxins 11
Prokaryotic type KH domain (KH-domain type II) Rad51 N-terminal domain-like 11
Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) Homeodomain-like 11
Putative DNA-binding domain Cobalamin (vitamin B12)-binding domain 11
Urease metallochaperone UreE, N-terminal domain Urease metallochaperone UreE, C-terminal domain 11
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 11
Single hybrid motif alpha/beta-Hydrolases 11
Putative DNA-binding domain Initiation factor IF2/eIF5b, domain 3 11
post-HMGL domain-like 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
ClpP/crotonase NfeD domain-like 11
Ribonuclease H-like GIY-YIG endonuclease 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
PurS-like Class I glutamine amidotransferase-like 11
RuvA domain 2-like MCP/YpsA-like 11
PDZ domain-like ClpP/crotonase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Bet v1-like Thioredoxin-like 11
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain Phosphoenolpyruvate/pyruvate domain 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
S-adenosyl-L-methionine-dependent methyltransferases CheY-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
HAMP domain-like GAF domain-like 11
Carbamate kinase-like ACT-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
FAD-linked reductases, C-terminal domain Metallo-hydrolase/oxidoreductase 11
cAMP-binding domain-like P-loop containing nucleoside triphosphate hydrolases 11
PurS-like PurM C-terminal domain-like 11
Histidine-containing phosphotransfer domain, HPT domain Histidine-containing phosphotransfer domain, HPT domain 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
CheC-like Surface presentation of antigens (SPOA) 11
GAF domain-like CheY-like 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
PIN domain-like Ribonuclease H-like 11
Thioredoxin-like TPR-like 11
a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Nucleotidyltransferase substrate binding subunit/domain Nucleotidyltransferase substrate binding subunit/domain 11
HMA, heavy metal-associated domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 11
Protein kinase-like (PK-like) P-loop containing nucleoside triphosphate hydrolases 11
Nucleotide-diphospho-sugar transferases UDP-Glycosyltransferase/glycogen phosphorylase 11
PurS-like FGAM synthase PurL, linker domain 11
FMN-binding split barrel GAF domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
DinB/YfiT-like putative metalloenzymes C-type lectin-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
MesJ substrate recognition domain-like PheT/TilS domain 11
ADC-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
P-loop containing nucleoside triphosphate hydrolases ARM repeat 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
RuvA domain 2-like JAB1/MPN domain 11
Glutathione synthetase ATP-binding domain-like Cyclophilin-like 11
Cyclophilin-like Single hybrid motif 11
Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha) Thioredoxin-like 11
Phase 1 flagellin Phase 1 flagellin 11
Nucleotide-binding domain Nucleotide-binding domain 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
FMN-linked oxidoreductases Nucleotide-binding domain 11
"Winged helix" DNA-binding domain ClpP/crotonase 11
CO dehydrogenase ISP C-domain like Bet v1-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
ParB/Sulfiredoxin C-terminal domain of transcriptional repressors 11
Chaperone J-domain HSC20 (HSCB), C-terminal oligomerisation domain 11
Class II aaRS and biotin synthetases YbaK/ProRS associated domain 11
Xylose isomerase-like Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
WD40 repeat-like WD40 repeat-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Alkaline phosphatase-like Concanavalin A-like lectins/glucanases 11
Rudiment single hybrid motif PH0987 N-terminal domain-like 11
E set domains Autotransporter 11
DNA-glycosylase Nudix 11
Dimeric alpha+beta barrel Dimeric alpha+beta barrel 11
Glycosyl hydrolase domain Protein kinase-like (PK-like) 11
DNA primase core DNA primase DnaG, C-terminal domain 11
ADC synthase D-aminoacid aminotransferase-like PLP-dependent enzymes 11
Pili subunits GspK insert domain-like 11
beta-Roll beta-Roll 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Cobalamin (vitamin B12)-dependent enzymes 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
PrpR receptor domain-like P-loop containing nucleoside triphosphate hydrolases 11
post-HMGL domain-like Single hybrid motif 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
FAS1 domain FAS1 domain 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Transcription factor NusA, N-terminal domain Rad51 N-terminal domain-like 11
FAD/NAD(P)-binding domain Folate-binding domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Aconitase B, N-terminal domain Aconitase iron-sulfur domain 11
TGS-like ThrRS/AlaRS common domain 11
Nucleotide-binding domain FAD/NAD(P)-binding domain 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
YgfB-like Sec-C motif 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
Nucleic acid-binding proteins BRCT domain 11
Aconitase B, N-terminal domain LeuD/IlvD-like 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
PYP-like sensor domain (PAS domain) C-terminal effector domain of the bipartite response regulators 11
TolB, N-terminal domain Tricorn protease N-terminal domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
PUA domain-like alpha/beta knot 11
"Winged helix" DNA-binding domain MOP-like 11
PreATP-grasp domain PH0987 N-terminal domain-like 11
TPR-like UDP-Glycosyltransferase/glycogen phosphorylase 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase PP2C-like 11
FAD/NAD(P)-binding domain Metallo-hydrolase/oxidoreductase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Ribosomal protein S5 domain 2-like HSP90 C-terminal domain 11
Ferritin-like Calcium ATPase, transduction domain A 11
alpha/beta-Hydrolases AhpD-like 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Dihydropteroate synthetase-like Methionine synthase activation domain-like 11
PLP-dependent transferases Ornithine decarboxylase C-terminal domain 11
TrmE connector domain P-loop containing nucleoside triphosphate hydrolases 11
PLP-dependent transferases PLP-dependent transferases 11
CO dehydrogenase ISP C-domain like FAD-binding/transporter-associated domain-like 11
Homeodomain-like DNA-glycosylase 11
PrpR receptor domain-like Homeodomain-like 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
PreATP-grasp domain post-HMGL domain-like 11
beta-lactamase/transpeptidase-like Penicillin-binding protein associated domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
Ada DNA repair protein, N-terminal domain (N-Ada 10) DNA-glycosylase 11
UROD/MetE-like UROD/MetE-like 11
FAD/NAD(P)-binding domain SCP-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
SMAD/FHA domain SMAD/FHA domain 11
Single hybrid motif FAD/NAD(P)-binding domain 11
S-adenosyl-L-methionine-dependent methyltransferases Nucleotide-diphospho-sugar transferases 11
cAMP-binding domain-like FAD/NAD(P)-binding domain 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
Ribbon-helix-helix FAD-linked oxidoreductase 11
Ribonuclease H-like Nucleic acid-binding proteins 11
HMA, heavy metal-associated domain FAD/NAD(P)-binding domain 11
CO dehydrogenase molybdoprotein N-domain-like Bet v1-like 11
N-terminal domain of bifunctional PutA protein ALDH-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
"Winged helix" DNA-binding domain Acyl-CoA N-acyltransferases (Nat) 11
alpha/beta-Hydrolases S-adenosyl-L-methionine-dependent methyltransferases 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Bet v1-like GST C-terminal domain-like 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
CBS-domain pair CBS-domain pair 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
CheY-like HD-domain/PDEase-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases WGR domain-like 11
Leukotriene A4 hydrolase N-terminal domain Metalloproteases ("zincins"), catalytic domain 11
alpha/beta-Hydrolases NTF2-like 11
N-terminal domain of bifunctional PutA protein FAD-linked oxidoreductase 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
ADC-like Riboflavin synthase domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
alpha/beta-Hydrolases Galactose-binding domain-like 11
Elongation factor Ts (EF-Ts), dimerisation domain Elongation factor Ts (EF-Ts), dimerisation domain 11

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