SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Sequences with adjacent and non-adjacent CarD-like and TRCF domain-like domains in all eukaryotes

Domain architectures containing:

CarD-like
TRCF domain-like

domains in any order and any position.

Domain pairs in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain pair in that group of genomes.

Groups of genomes may be slower than individual genomes.


Domain pair architectures in individual genomes

Different types of domain combinations.

The key to the domain colours is at the bottom of the page.

Genome: Physcomitrella patens subsp. patens 22

PP1S59_1V6.1


Genome: Aspergillus zonatus v1.0

jgi|Aspzo1|147874|fgenesh1_pg.46_#_13


Genome: Theobroma cacao Matina 1-6 v0.9

CGD0017660


Genome: Selaginella moellendorffii contains 2 proteins with this domain pair combination.

jgi|Selmo1|77276|e_gw1.1.1163.1

jgi|Selmo1|83786|e_gw1.5.833.1


Genome: Eucalyptus grandis v201

Eucgr.I01574.1|PACid:23596204


Genome: Theobroma cacao B97-61/B2 v1

Tc04_g005500


Genome: Gossypium raimondii v221

Gorai.006G000100.1|PACid:26832538


Genome: Citrus clementina v165

clementine0.9_029569m|PACid:19256839


Genome: Citrus sinensis v154 contains 3 proteins with this domain pair combination.

orange1.1g003260m|PACid:18127500

orange1.1g003267m|PACid:18127499

orange1.1g003268m|PACid:18127501


Genome: Thellungiella halophila v173 contains 3 proteins with this domain pair combination.

Thhalv10020075m|PACid:20182889

Thhalv10020076m|PACid:20182888

Thhalv10020093m|PACid:20182890


Genome: Brassica rapa Chiifu-401 1.2

Bra040707


Genome: Capsella rubella v183

Carubv10016483m|PACid:20899981


Genome: Arabidopsis lyrata

jgi|Araly1|477305|fgenesh2_kg.3__6__AT3G02060.1


Genome: Arabidopsis thaliana 10 contains 2 proteins with this domain pair combination.

AT3G02060.2

AT3G02060.1


Genome: Carica papaya

evm.TU.supercontig_70.45


Genome: Medicago truncatula contains 2 proteins with this domain pair combination.

Medtr7g084560.1

Medtr7g084560.2


Genome: Glycine max v109 contains 2 proteins with this domain pair combination.

Glyma16g05050.1|PACid:16301530

Glyma16g05050.2|PACid:16301531


Genome: Cucumis sativus v122

Cucsa.300090.1|PACid:16975576


Genome: Fragaria vesca

gene01408


Genome: Prunus persica v139

ppa001550m|PACid:17649533


Genome: Linum usitatissimum v200 contains 2 proteins with this domain pair combination.

Lus10012587|PACid:23143835

Lus10041506|PACid:23146596


Genome: Manihot esculenta v147 contains 2 proteins with this domain pair combination.

cassava4.1_001816m|PACid:17985495

cassava4.1_001726m|PACid:17985494


Genome: Populus trichocarpa v156 contains 3 proteins with this domain pair combination.

POPTR_0014s14190.1|PACid:18222984

POPTR_0002s23840.2|PACid:18246674

POPTR_0002s23840.1|PACid:18246673


Genome: Mimulus guttatus v140

mgv1a001507m|PACid:17684690


Genome: Solanum lycopersicum v.2.3

Solyc02g094590.2.1


Genome: Actinidia chinensis Hongyang

Achn334221


Genome: Aquilegia coerulea v195 contains 2 proteins with this domain pair combination.

Aquca_022_00014.1|PACid:22054845

Aquca_022_00014.2|PACid:22054844


Genome: Brachypodium distachyon

EG:BRADI4G17160.1


Genome: Oryza barthii 22

OBART11G15830.1


Genome: Oryza glumaepatula 22 contains 2 proteins with this domain pair combination.

OGLUM11G15250.1

OGLUM11G15250.2


Genome: Oryza punctata 22 contains 2 proteins with this domain pair combination.

OPUNC11G12990.1

OPUNC11G12990.2


Genome: Oryza nivara 22

ONIVA12G05390.1


Genome: Oryza sativa ssp. japonica 5.0 contains 2 proteins with this domain pair combination.

LOC_Os11g32880.1|13111.m03208|protein

LOC_Os11g32880.2|13111.m03209|protein


Genome: Oryza sativa v193 contains 2 proteins with this domain pair combination.

LOC_Os11g32880.1|PACid:21948676

LOC_Os11g32880.2|PACid:21948677


Genome: Phyllostachys heterocyclavar. pubescens

PH01004081G0040


Genome: Setaria italica v164

Si026025m|PACid:19708140


Genome: Zea mays v181

GRMZM2G166718_T02|PACid:20846570


Genome: Sorghum bicolor

jgi|Sorbi1|5040494|Sb05g020300


Genome: Amborella trichopoda 22

ERN06345


Genome: Physcomitrella patens

jgi|Phypa1_1|210013|estExt_Genewise1.C_590001


Genome: Cyanidioschyzon merolae strain 10D 22

CMC111CT


Genome: Cyanidioschyzon merolae

gnl|CMER|CMC111C


Genome: Porphyridium purpureum 02_2012

evm.model.contig_3445.4


Genome: Acholeplasma laidlawii PG-8A

ABX80663