SUPERFAMILY 1.75 HMM library and genome assignments server

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Sequences with adjacent and non-adjacent PDZ domain-like and PDZ domain-like domains in all archaea

Domain architectures containing:

PDZ domain-like
PDZ domain-like

domains in any order and any position.

Domain pairs in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain pair in that group of genomes.

Groups of genomes may be slower than individual genomes.


Domain pair architectures in individual genomes

Different types of domain combinations.

The key to the domain colours is at the bottom of the page.

Genome: Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1

gi|511059942|ref|YP_008071827.1|


Genome: Methanomethylovorans hollandica DSM 15978 contains 2 proteins with this domain pair combination.

gi|435849759|ref|YP_007301700.1|

gi|435851884|ref|YP_007313470.1|


Genome: Methanolobus psychrophilus R15

gi|410669615|ref|YP_006921986.1|


Genome: Methanosarcina mazei Tuc01

gi|452211515|ref|YP_007491629.1|


Genome: Archaeoglobus sulfaticallidus PM70-1

gi|488600046|ref|YP_007906517.1|


Genome: Halovivax ruber XH-70

gi|433639725|ref|YP_007285485.1|


Genome: Haloquadratum walsbyi C23

gi|385802484|ref|YP_005838884.1|


Genome: Halorhabdus tiamatea SARL4B

gi|529078121|ref|YP_008377124.1|


Genome: Natrinema pellirubrum DSM 15624

gi|433589777|ref|YP_007279273.1|


Genome: Natronococcus occultus SP4

gi|435847693|ref|YP_007309943.1|


Genome: Natronobacterium gregoryi SP2

gi|429192355|ref|YP_007178033.1|


Genome: Haloarcula hispanica N601

gi|564288732|ref|YP_008874951.1|


Genome: Candidatus Methanomethylophilus alvus Mx1201

gi|478482821|ref|YP_007713471.1|


Genome: Candidatus Caldiarchaeum subterraneum

gi|557693774|ref|YP_008796828.1|


Genome: halophilic archaeon DL31

gi|345005864|ref|YP_004808717.1|


Genome: Methanocella arvoryzae MRE50

gi|147920745|ref|YP_685451.1|


Genome: Methanocella conradii HZ254

gi|383319214|ref|YP_005380055.1|


Genome: Methanocella paludicola SANAE

gi|282162758|ref|YP_003355143.1|


Genome: Methanosaeta harundinacea 6Ac

gi|386003030|ref|YP_005921329.1|


Genome: Methanosaeta concilii GP6

gi|330506561|ref|YP_004382989.1|


Genome: Methanosalsum zhilinae DSM 4017

gi|336476398|ref|YP_004615539.1|


Genome: Methanohalobium evestigatum Z-7303

gi|298675554|ref|YP_003727304.1|


Genome: Methanococcoides burtonii DSM 6242

gi|91772313|ref|YP_565005.1|


Genome: Methanosarcina acetivorans C2A

gi|20091280|ref|NP_617355.1|


Genome: Methanosarcina mazei Go1

gi|21229111|ref|NP_635033.1|


Genome: Methanosarcina barkeri str. Fusaro

gi|73670566|ref|YP_306581.1|


Genome: Methanohalophilus mahii DSM 5219

gi|294495973|ref|YP_003542466.1|


Genome: Archaeoglobus veneficus SNP6

gi|327401575|ref|YP_004342414.1|


Genome: Thermoplasmatales archaeon BRNA1

gi|474934474|ref|YP_007688056.1|


Genome: Salinarchaeum sp. Harcht-Bsk1

gi|510880868|ref|YP_008053536.1|


Genome: Halopiger xanaduensis SH-6

gi|336254858|ref|YP_004597965.1|


Genome: Halalkalicoccus jeotgali B3

gi|300710232|ref|YP_003736046.1|


Genome: Haloquadratum walsbyi DSM 16790

gi|110667070|ref|YP_656881.1|


Genome: Halomicrobium mukohataei DSM 12286

gi|257387347|ref|YP_003177120.1|


Genome: Halorhabdus utahensis DSM 12940

gi|257053041|ref|YP_003130874.1|


Genome: Haloterrigena turkmenica DSM 5511 contains 2 proteins with this domain pair combination.

gi|284166733|ref|YP_003405012.1|

gi|284163378|ref|YP_003401657.1|


Genome: Natrinema sp. J7-2

gi|397774403|ref|YP_006541949.1|


Genome: Natrialba magadii ATCC 43099

gi|289581180|ref|YP_003479646.1|


Genome: Halogeometricum borinquense DSM 11551

gi|313125250|ref|YP_004035514.1|


Genome: Halorubrum lacusprofundi ATCC 49239

gi|222480101|ref|YP_002566338.1|


Genome: Haloferax mediterranei ATCC 33500

gi|389847396|ref|YP_006349635.1|


Genome: Haloferax volcanii DS2

gi|292656005|ref|YP_003535902.1|


Genome: Halobacterium salinarum R1

gi|169236626|ref|YP_001689826.1|


Genome: Halobacterium sp. NRC-1

gi|15790880|ref|NP_280704.1|


Genome: Haloarcula hispanica ATCC 33960

gi|344210728|ref|YP_004795048.1|


Genome: Haloarcula marismortui ATCC 43049

gi|55379732|ref|YP_137582.1|


Genome: Aciduliprofundum sp. MAR08-339

gi|432328651|ref|YP_007246795.1|


Genome: Aciduliprofundum boonei T469

gi|289595991|ref|YP_003482687.1|


Genome: Thermoproteus uzoniensis 768-20

gi|327311900|ref|YP_004338797.1|