SUPERFAMILY 1.75 HMM library and genome assignments server

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Sequences with adjacent and non-adjacent DNA/RNA polymerases and DNA/RNA polymerases domains in all bacteria

Domain architectures containing:

DNA/RNA polymerases
DNA/RNA polymerases

domains in any order and any position.

Domain pairs in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain pair in that group of genomes.

Groups of genomes may be slower than individual genomes.


Domain pair architectures in individual genomes

Different types of domain combinations.

The key to the domain colours is at the bottom of the page.

Genome: Lactococcus lactis subsp. lactis IO-1

gi|459284696|ref|YP_007507801.1|


Genome: Lactococcus lactis subsp. lactis KF147

gi|281427973|ref|YP_003354927.1|


Genome: Lactococcus lactis subsp. cremoris UC509.9

gi|414073279|ref|YP_006998498.1|


Genome: Lactococcus lactis subsp. cremoris A76

gi|385836910|ref|YP_005877362.1|


Genome: Streptococcus constellatus subsp. pharyngis C1050

gi|538354486|ref|YP_008499092.1|


Genome: Streptococcus constellatus subsp. pharyngis C818

gi|538375270|ref|YP_008511263.1|


Genome: Streptococcus constellatus subsp. pharyngis C232

gi|538347628|ref|YP_008495501.1|


Genome: Salmonella bongori N268-08

gi|526230674|ref|YP_008325316.1|


Genome: Herpetosiphon aurantiacus DSM 785

gi|159898906|ref|YP_001545153.1|


Genome: Roseiflexus sp. RS-1

gi|148657122|ref|YP_001277327.1|


Genome: Roseiflexus castenholzii DSM 13941

gi|156742637|ref|YP_001432766.1|


Genome: Chloroflexus sp. Y-400-fl

gi|222526871|ref|YP_002571342.1|


Genome: Chloroflexus aurantiacus J-10-fl

gi|163848914|ref|YP_001636958.1|


Genome: Meiothermus ruber DSM 1279

gi|291296659|ref|YP_003508057.1|


Genome: Acidaminococcus fermentans DSM 20731

gi|284048438|ref|YP_003398777.1|


Genome: Symbiobacterium thermophilum IAM 14863

gi|51893026|ref|YP_075717.1|


Genome: Eubacterium rectale M104/1

gi|479215344|ref|YP_007842726.1|


Genome: Acidithiobacillus ferrivorans SS3

gi|344200042|ref|YP_004784368.1|


Genome: Vibrio vulnificus MO6-24/O contains 2 proteins with this domain pair combination.

gi|320158397|ref|YP_004190775.1|

gi|320156443|ref|YP_004188822.1|


Genome: Serratia proteamaculans 568

gi|157372371|ref|YP_001480360.1|


Genome: Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)

gi|238898732|ref|YP_002924413.1|


Genome: Thermococcus sp. AM4

gi|223478327|ref|YP_002582532.1|


Genome: Thermococcus sp. CL1

gi|390960863|ref|YP_006424697.1|


Genome: Thermococcus litoralis DSM 5473

gi|530549523|ref|YP_008430076.1|


Genome: Haloquadratum walsbyi C23

gi|385803104|ref|YP_005839504.1|


Genome: Thermococcus onnurineus NA1

gi|212223145|ref|YP_002306381.1|


Genome: Thermococcus kodakarensis KOD1

gi|57639936|ref|YP_182414.1|


Genome: Thermococcus sibiricus MM 739

gi|242398902|ref|YP_002994326.1|


Genome: Thermococcus barophilus MP

gi|315231385|ref|YP_004071821.1|


Genome: Pyrococcus sp. ST04

gi|389851811|ref|YP_006354045.1|


Genome: Pyrococcus yayanosii CH1

gi|337285020|ref|YP_004624494.1|


Genome: Pyrococcus horikoshii OT3

gi|14591688|ref|NP_143776.1|


Genome: Haloquadratum walsbyi DSM 16790

gi|110667662|ref|YP_657473.1|


Genome: Natronomonas pharaonis DSM 2160

gi|76801404|ref|YP_326412.1|


Genome: Methanocaldococcus sp. FS406-22

gi|289192745|ref|YP_003458686.1|


Genome: Methanocaldococcus fervens AG86

gi|256811403|ref|YP_003128772.1|


Genome: Methanocaldococcus vulcanius M7

gi|261402213|ref|YP_003246437.1|


Genome: Methanocaldococcus jannaschii DSM 2661

gi|15669075|ref|NP_247880.1|