SUPERFAMILY 1.75 HMM library and genome assignments server

Bifidobacterium animalis subsp. lactis Bl-04 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Actinobacteria; Actinobacteria; Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium animalis; Bifidobacterium animalis subsp. lactis; Bifidobacterium animalis subsp. lactis Bl-04

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1567 total
1122 (72 %) with assignment
354 average length
63 % amino acid coverage
Domains: 1625 total
491 unique superfamilies
303 unique families
310 average length
3.3 average superfamily size
70 % formed by duplication
Domain combinations: 279 domain pairs
657 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

160 137 50 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
36 36 20 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
31 30 15 4 SCOP 51445 (Trans)glycosidases
28 28 5 1 SCOP 161098 MetI-like
28 27 19 0 SCOP 46785 "Winged helix" DNA-binding domain
27 26 6 1 SCOP 53850 Periplasmic binding protein-like II
26 22 18 2 SCOP 50249 Nucleic acid-binding proteins
24 24 5 3 SCOP 53448 Nucleotide-diphospho-sugar transferases
23 14 11 2 SCOP 53067 Actin-like ATPase domain
21 21 2 3 SCOP 53383 PLP-dependent transferases
20 20 6 0 SCOP 53474 alpha/beta-Hydrolases
20 20 3 1 SCOP 103473 MFS general substrate transporter
20 18 14 4 SCOP 54211 Ribosomal protein S5 domain 2-like
18 18 7 3 SCOP 56784 HAD-like
18 16 4 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
17 17 3 1 SCOP 53822 Periplasmic binding protein-like I
16 16 6 3 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
15 15 5 0 SCOP 47413 lambda repressor-like DNA-binding domains
14 14 7 2 SCOP 52317 Class I glutamine amidotransferase-like
13 13 9 2 SCOP 52374 Nucleotidylyl transferase
12 12 10 1 SCOP 55681 Class II aaRS and biotin synthetases
11 6 5 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
11 11 5 0 SCOP 55811 Nudix
11 10 8 2 SCOP 50447 Translation proteins
11 9 7 0 SCOP 55021 ACT-like
11 6 4 1 SCOP 54980 EF-G C-terminal domain-like
10 10 3 1 SCOP 56112 Protein kinase-like (PK-like)
10 10 7 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
9 8 6 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
9 9 3 2 SCOP 53271 PRTase-like
9 9 5 2 SCOP 53098 Ribonuclease H-like
9 9 3 1 SCOP 52980 Restriction endonuclease-like
9 9 3 1 SCOP 52172 CheY-like
9 9 3 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
9 8 4 1 SCOP 90123 ABC transporter transmembrane region
8 8 3 4 SCOP 51366 Ribulose-phoshate binding barrel
8 7 6 1 SCOP 52833 Thioredoxin-like
8 8 6 3 SCOP 75217 alpha/beta knot
8 6 5 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
8 8 2 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
8 8 2 1 SCOP 53254 Phosphoglycerate mutase-like
8 8 4 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
7 7 3 2 SCOP 53613 Ribokinase-like
7 7 3 0 SCOP 46689 Homeodomain-like
7 7 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
7 6 6 1 SCOP 81301 Nucleotidyltransferase
7 7 3 3 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
7 6 4 1 SCOP 52440 PreATP-grasp domain
7 7 5 1 SCOP 51011 Glycosyl hydrolase domain
6 6 3 4 SCOP 51569 Aldolase
6 6 5 1 SCOP 51905 FAD/NAD(P)-binding domain
6 6 4 2 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
6 6 4 0 SCOP 48452 TPR-like
6 5 5 0 SCOP 81296 E set domains
6 6 2 1 SCOP 54001 Cysteine proteinases
6 6 5 0 SCOP 56601 beta-lactamase/transpeptidase-like
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 5 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
6 2 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 3 2 SCOP 55120 Pseudouridine synthase
5 5 2 0 SCOP 52218 Flavoproteins
5 5 4 1 SCOP 55174 Alpha-L RNA-binding motif
5 5 3 2 SCOP 51161 Trimeric LpxA-like enzymes
5 5 3 0 SCOP 102114 Radical SAM enzymes
5 5 2 1 SCOP 51395 FMN-linked oxidoreductases
5 5 4 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
5 5 4 0 SCOP 46955 Putative DNA-binding domain
5 5 3 0 SCOP 49879 SMAD/FHA domain
5 4 4 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 4 4 0 SCOP 47781 RuvA domain 2-like
5 5 4 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 3 0 SCOP 51246 Rudiment single hybrid motif
5 4 4 1 SCOP 51971 Nucleotide-binding domain
5 5 4 1 SCOP 81665 Calcium ATPase, transmembrane domain M
4 4 3 0 SCOP 100950 NagB/RpiA/CoA transferase-like
4 4 2 2 SCOP 53633 Carbamate kinase-like
4 4 4 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 3 2 2 SCOP 52096 ClpP/crotonase
4 3 3 1 SCOP 51419 PLP-binding barrel
4 4 1 1 SCOP 56801 Acetyl-CoA synthetase-like
4 4 3 1 SCOP 109604 HD-domain/PDEase-like
4 4 4 0 SCOP 54534 FKBP-like
4 4 4 1 SCOP 49785 Galactose-binding domain-like
4 4 3 1 SCOP 51182 RmlC-like cupins
4 4 3 0 SCOP 52266 SGNH hydrolase
4 3 2 0 SCOP 52151 FabD/lysophospholipase-like
4 4 3 2 SCOP 55931 Glutamine synthetase/guanido kinase
4 4 3 0 SCOP 52954 Class II aaRS ABD-related
4 4 3 4 SCOP 51998 PFL-like glycyl radical enzymes
4 4 4 1 SCOP 56349 DNA breaking-rejoining enzymes
4 4 3 0 SCOP 53300 vWA-like
4 4 3 3 SCOP 52467 DHS-like NAD/FAD-binding domain
4 4 2 2 SCOP 75005 Arabinanase/levansucrase/invertase
4 4 2 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
4 4 4 1 SCOP 56719 Type II DNA topoisomerase
4 2 2 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
4 2 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
4 4 3 0 SCOP 81653 Calcium ATPase, transduction domain A
3 3 2 2 SCOP 51556 Metallo-dependent hydrolases
3 3 1 1 SCOP 52141 Uracil-DNA glycosylase-like
3 3 1 1 SCOP 56420 Peptide deformylase
3 2 2 0 SCOP 54197 HIT-like
3 3 2 2 SCOP 47240 Ferritin-like
3 3 1 0 SCOP 143800 L28p-like
3 3 2 2 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 1 1 SCOP 48557 L-aspartase-like
3 3 2 2 SCOP 53720 ALDH-like
3 3 3 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
3 2 2 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
3 3 3 2 SCOP 56796 Dehydroquinate synthase-like
3 3 1 1 SCOP 53187 Zn-dependent exopeptidases
3 3 2 0 SCOP 55315 L30e-like
3 3 3 2 SCOP 56672 DNA/RNA polymerases
3 3 2 1 SCOP 53590 Nucleoside hydrolase
3 3 2 0 SCOP 53649 Alkaline phosphatase-like
3 3 3 0 SCOP 74650 Galactose mutarotase-like
3 3 3 0 SCOP 56317 Carbon-nitrogen hydrolase
3 3 1 1 SCOP 49899 Concanavalin A-like lectins/glucanases
3 3 2 2 SCOP 48208 Six-hairpin glycosidases
3 3 2 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
3 3 2 0 SCOP 54631 CBS-domain pair
3 3 2 0 SCOP 54909 Dimeric alpha+beta barrel
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 3 2 0 SCOP 53807 "Helical backbone" metal receptor
3 3 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
3 3 3 1 SCOP 53955 Lysozyme-like
3 3 2 0 SCOP 56219 DNase I-like
3 2 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
3 3 2 1 SCOP 55826 YbaK/ProRS associated domain
3 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
3 3 2 0 SCOP 63817 Sortase
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 0 SCOP 56176 FAD-binding/transporter-associated domain-like
3 3 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 3 2 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
3 2 2 1 SCOP 56042 PurM C-terminal domain-like
3 2 2 1 SCOP 55326 PurM N-terminal domain-like
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
3 2 2 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 1 SCOP 81338 Aquaporin-like
2 2 2 2 SCOP 53927 Cytidine deaminase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 2 SCOP 53697 SIS domain
2 2 2 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 2 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
2 2 1 0 SCOP 89447 AbrB/MazE/MraZ-like
2 2 1 1 SCOP 75620 Release factor
2 2 2 1 SCOP 50129 GroES-like
2 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 0 SCOP 48150 DNA-glycosylase
2 2 2 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 0 SCOP 50475 FMN-binding split barrel
2 1 1 1 SCOP 51726 UROD/MetE-like
2 2 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 2 0 SCOP 47819 HRDC-like
2 2 2 1 SCOP 52972 ITPase-like
2 2 2 0 SCOP 55781 GAF domain-like
2 2 1 1 SCOP 88713 Glycoside hydrolase/deacetylase
2 2 2 0 SCOP 52788 Phosphotyrosine protein phosphatases I
2 2 2 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 0 SCOP 144091 Rhomboid-like
2 2 1 0 SCOP 69118 AhpD-like
2 2 1 1 SCOP 102405 MCP/YpsA-like
2 2 2 0 SCOP 82771 GIY-YIG endonuclease
2 2 2 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 2 0 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 81340 Clc chloride channel
2 2 2 1 SCOP 54913 GlnB-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 2 0 SCOP 88697 PUA domain-like
2 2 1 0 SCOP 48600 Chorismate mutase II
2 2 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 1 0 SCOP 140931 Fic-like
2 1 1 0 SCOP 53901 Thiolase-like
2 1 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
2 1 1 1 SCOP 56024 Phospholipase D/nuclease
2 2 1 0 SCOP 140453 EsxAB dimer-like
2 2 2 0 SCOP 46565 Chaperone J-domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 0 SCOP 46548 alpha-helical ferredoxin
2 2 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
2 2 1 0 SCOP 46589 tRNA-binding arm
2 2 1 0 SCOP 81923 Double Clp-N motif
2 2 2 1 SCOP 52922 TK C-terminal domain-like
2 2 1 0 SCOP 158472 HAMP domain-like
2 1 1 0 SCOP 53681 Aspartate/glutamate racemase
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 2 SCOP 50621 Alanine racemase C-terminal domain-like
2 2 2 1 SCOP 101904 GyrA/ParC C-terminal domain-like
2 2 1 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
2 2 2 0 SCOP 63380 Riboflavin synthase domain-like
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 1 SCOP 56327 LDH C-terminal domain-like
2 2 2 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 1 0 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 141259 CarD-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 2 1 1 SCOP 54368 Glutamine synthetase, N-terminal domain
2 2 2 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 81606 PP2C-like
1 1 1 0 SCOP 142433 CinA-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56300 Metallo-dependent phosphatases
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 51658 Xylose isomerase-like
1 1 1 0 SCOP 51695 PLC-like phosphodiesterases
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 1 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 51730 FAD-linked oxidoreductase
1 1 1 0 SCOP 55821 YrdC/RibB
1 1 1 0 SCOP 51261 Duplicated hybrid motif
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 54862 4Fe-4S ferredoxins
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
1 1 1 0 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 48576 Terpenoid synthases
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 48371 ARM repeat
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 1 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 48613 Heme oxygenase-like
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 1 SCOP 50891 Cyclophilin-like
1 1 1 1 SCOP 88723 PIN domain-like
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 1 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 0 SCOP 51126 Pectin lyase-like
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 56529 FAH
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 52058 L domain-like
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 0 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 0 SCOP 141571 Pentapeptide repeat-like
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 47598 Ribbon-helix-helix
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 0 SCOP 143011 RelE-like
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 81901 HCP-like
1 1 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
1 1 1 0 SCOP 51206 cAMP-binding domain-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 50993 Peptidase/esterase 'gauge' domain
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 143081 BB1717-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
1 1 1 1 SCOP 89796 CoA-transferase family III (CaiB/BaiF)
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 1 SCOP 63411 LuxS/MPP-like metallohydrolase
1 1 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 1 SCOP 50814 Lipocalins
1 1 1 1 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 159659 Cgl1923-like
1 1 1 0 SCOP 52309 N-(deoxy)ribosyltransferase-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 50939 Sialidases
1 1 1 0 SCOP 49452 Starch-binding domain-like
1 1 1 0 SCOP 82171 DPP6 N-terminal domain-like
1 1 1 0 SCOP 55136 Probable bacterial effector-binding domain
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 56563 Major capsid protein gp5
1 1 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 54106 LysM domain
1 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 49265 Fibronectin type III
1 1 1 1 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 116726 TrkA C-terminal domain-like
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 56037 PheT/TilS domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 1 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 160964 MalF N-terminal region-like
1 1 1 0 SCOP 55252 C-terminal domain of arginine repressor
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 47823 lambda integrase-like, N-terminal domain
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 53743 FucI/AraA N-terminal and middle domains
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 159283 Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 50443 FucI/AraA C-terminal domain-like
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 82708 R3H domain
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 1 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Replisome organizer (g39p helicase loader/inhibitor protein)
SCOP superfamily Multidrug efflux transporter AcrB transmembrane domain
SCOP superfamily beta-sandwich domain of Sec23/24
SCOP superfamily Subunit VIII of photosystem I reaction centre, PsaI
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Zinc-binding domain of translation initiation factor 2 beta
SCOP superfamily Variable surface antigen VlsE
SCOP superfamily Phase 1 flagellin
SCOP superfamily Outer capsid protein sigma 3
SCOP superfamily YWTD domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Delta-sleep-inducing peptide immunoreactive peptide
SCOP superfamily Coiled-coil dimerization domain from cortexillin I
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Rubredoxin-like
SCOP superfamily Type X cellulose binding domain, CBDX
SCOP superfamily Outer membrane efflux proteins (OEP)
SCOP superfamily Cytochrome b5-like heme/steroid binding domain
SCOP superfamily Tetrahydrobiopterin biosynthesis enzymes-like
SCOP superfamily 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
SCOP superfamily Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP superfamily Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
SCOP superfamily Pili subunits
SCOP superfamily NTF2-like
SCOP superfamily Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP superfamily His-Me finger endonucleases
SCOP superfamily B12-dependent dehydatase associated subunit
SCOP superfamily Cobalamin (vitamin B12)-binding domain
SCOP superfamily Barstar-related
SCOP superfamily AFP III-like domain
SCOP superfamily Herpes virus serine proteinase, assemblin
SCOP superfamily ADC-like
SCOP superfamily Neurophysin II
SCOP superfamily Cna protein B-type domain
SCOP superfamily GntR ligand-binding domain-like
SCOP superfamily N-terminal domain of the delta subunit of the F1F0-ATP synthase
SCOP superfamily Apolipophorin-III
SCOP superfamily t-snare proteins
SCOP superfamily Apolipoprotein
SCOP superfamily PGBD-like
SCOP superfamily Smac/diablo
SCOP superfamily MgtE membrane domain-like
SCOP superfamily CV3147-like
SCOP superfamily YonK-like
SCOP superfamily BLRF2-like
SCOP superfamily YcgL-like
SCOP superfamily PH1570-like
SCOP superfamily XCC0632-like
SCOP superfamily MgtE N-terminal domain-like
SCOP superfamily VC0467-like
SCOP superfamily YefM-like
SCOP superfamily MOSC N-terminal domain-like
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily 2-methylcitrate dehydratase PrpD
SCOP superfamily Hypothetical protein YwqG

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