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Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica) superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Gammaproteobacteria; unclassified Gammaproteobacteria; sulfur-oxidizing symbionts; Candidatus Ruthia; Candidatus Ruthia magnifica; Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 976 total
792 (81 %) with assignment
313 average length
76 % amino acid coverage
Domains: 1234 total
498 unique superfamilies
357 unique families
293 average length
2.5 average superfamily size
60 % formed by duplication
Domain combinations: 285 domain pairs
543 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

86 73 41 9 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
31 21 16 4 SCOP 50249 Nucleic acid-binding proteins
28 27 15 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
19 19 4 1 SCOP 52833 Thioredoxin-like
18 18 6 6 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
16 16 13 5 SCOP 52374 Nucleotidylyl transferase
15 12 9 2 SCOP 51905 FAD/NAD(P)-binding domain
15 8 3 1 SCOP 53067 Actin-like ATPase domain
15 14 2 4 SCOP 53383 PLP-dependent transferases
15 12 10 6 SCOP 54211 Ribosomal protein S5 domain 2-like
14 14 9 1 SCOP 55681 Class II aaRS and biotin synthetases
13 11 6 0 SCOP 46626 Cytochrome c
12 12 4 3 SCOP 53448 Nucleotide-diphospho-sugar transferases
11 11 7 0 SCOP 54862 4Fe-4S ferredoxins
10 9 8 2 SCOP 50447 Translation proteins
10 7 7 0 SCOP 55021 ACT-like
9 9 2 1 SCOP 56784 HAD-like
9 9 7 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
8 7 4 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
8 8 3 5 SCOP 51569 Aldolase
8 8 7 2 SCOP 52317 Class I glutamine amidotransferase-like
8 4 3 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
8 5 4 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
7 7 1 3 SCOP 51366 Ribulose-phoshate binding barrel
7 7 3 2 SCOP 53098 Ribonuclease H-like
7 7 2 2 SCOP 102114 Radical SAM enzymes
7 7 6 0 SCOP 54534 FKBP-like
7 7 5 0 SCOP 54631 CBS-domain pair
7 4 4 1 SCOP 54980 EF-G C-terminal domain-like
7 6 3 2 SCOP 52440 PreATP-grasp domain
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 3 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 2 1 1 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 4 0 SCOP 56112 Protein kinase-like (PK-like)
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 4 3 SCOP 55120 Pseudouridine synthase
5 5 4 1 SCOP 46785 "Winged helix" DNA-binding domain
5 5 4 1 SCOP 53850 Periplasmic binding protein-like II
5 5 3 3 SCOP 51161 Trimeric LpxA-like enzymes
5 5 2 3 SCOP 52096 ClpP/crotonase
5 5 5 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
5 4 4 1 SCOP 51230 Single hybrid motif
5 5 4 1 SCOP 81301 Nucleotidyltransferase
5 3 2 2 SCOP 53901 Thiolase-like
5 5 3 1 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 4 0 SCOP 56176 FAD-binding/transporter-associated domain-like
5 5 3 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
5 2 2 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
4 4 3 2 SCOP 53927 Cytidine deaminase-like
4 4 4 1 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
4 4 2 0 SCOP 56300 Metallo-dependent phosphatases
4 4 1 3 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
4 4 3 1 SCOP 55174 Alpha-L RNA-binding motif
4 4 3 2 SCOP 75217 alpha/beta knot
4 4 2 2 SCOP 53633 Carbamate kinase-like
4 4 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
4 4 3 1 SCOP 89360 HesB-like domain
4 4 1 0 SCOP 48452 TPR-like
4 4 3 1 SCOP 54292 2Fe-2S ferredoxin-like
4 4 1 1 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
4 4 2 1 SCOP 75169 DsrEFH-like
4 4 4 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
4 4 3 2 SCOP 53955 Lysozyme-like
4 2 1 0 SCOP 63411 LuxS/MPP-like metallohydrolase
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 4 0 SCOP 46548 alpha-helical ferredoxin
4 4 1 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
4 4 3 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
4 4 3 1 SCOP 56719 Type II DNA topoisomerase
4 2 2 0 SCOP 116726 TrkA C-terminal domain-like
4 3 2 1 SCOP 56042 PurM C-terminal domain-like
4 3 3 0 SCOP 63380 Riboflavin synthase domain-like
4 3 2 1 SCOP 55326 PurM N-terminal domain-like
4 2 2 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
3 3 3 2 SCOP 53271 PRTase-like
3 3 3 2 SCOP 53697 SIS domain
3 3 2 0 SCOP 103473 MFS general substrate transporter
3 3 1 1 SCOP 47729 IHF-like DNA-binding proteins
3 3 3 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
3 3 3 2 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
3 3 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
3 3 2 3 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
3 3 3 1 SCOP 55811 Nudix
3 3 1 0 SCOP 54285 MoaD/ThiS
3 3 2 1 SCOP 51395 FMN-linked oxidoreductases
3 3 1 1 SCOP 69721 DsrC, the gamma subunit of dissimilatory sulfite reductase
3 3 2 1 SCOP 51419 PLP-binding barrel
3 2 2 2 SCOP 51726 UROD/MetE-like
3 3 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
3 3 3 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
3 3 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
3 3 3 3 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 3 1 SCOP 52954 Class II aaRS ABD-related
3 3 3 0 SCOP 52172 CheY-like
3 3 2 1 SCOP 56601 beta-lactamase/transpeptidase-like
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 2 2 1 SCOP 49503 Cupredoxins
3 2 2 0 SCOP 81901 HCP-like
3 3 1 1 SCOP 54913 GlnB-like
3 3 3 1 SCOP 88697 PUA domain-like
3 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
3 3 2 1 SCOP 90123 ABC transporter transmembrane region
3 3 2 0 SCOP 46589 tRNA-binding arm
3 2 2 0 SCOP 50156 PDZ domain-like
3 1 1 0 SCOP 55979 DNA clamp
3 3 1 1 SCOP 51246 Rudiment single hybrid motif
3 3 1 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 1 1 0 SCOP 54106 LysM domain
3 3 2 1 SCOP 52922 TK C-terminal domain-like
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 2 2 0 SCOP 51971 Nucleotide-binding domain
3 3 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
3 3 2 1 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 3 1 SCOP 81271 TGS-like
2 2 1 2 SCOP 51556 Metallo-dependent hydrolases
2 2 1 0 SCOP 53474 alpha/beta-Hydrolases
2 2 2 0 SCOP 48013 NusB-like
2 1 1 0 SCOP 161098 MetI-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 1 SCOP 53790 Tetrapyrrole methylase
2 2 1 0 SCOP 53613 Ribokinase-like
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 54197 HIT-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 1 SCOP 46946 S13-like H2TH domain
2 2 2 2 SCOP 53597 Dihydrofolate reductase-like
2 2 2 1 SCOP 100950 NagB/RpiA/CoA transferase-like
2 2 1 1 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 2 1 SCOP 55821 YrdC/RibB
2 2 2 0 SCOP 51261 Duplicated hybrid motif
2 2 2 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 2 SCOP 53720 ALDH-like
2 2 2 1 SCOP 50715 Ribosomal protein L25-like
2 2 1 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
2 2 1 2 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
2 2 1 1 SCOP 56655 Carbohydrate phosphatase
2 2 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 0 SCOP 82657 BolA-like
2 2 2 0 SCOP 46689 Homeodomain-like
2 2 1 0 SCOP 64307 SirA-like
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 2 2 SCOP 53187 Zn-dependent exopeptidases
2 2 2 1 SCOP 109604 HD-domain/PDEase-like
2 2 2 1 SCOP 50891 Cyclophilin-like
2 2 2 1 SCOP 53328 Formyltransferase
2 2 2 1 SCOP 53649 Alkaline phosphatase-like
2 2 1 1 SCOP 56322 ADC synthase
2 2 2 1 SCOP 51306 LexA/Signal peptidase
2 2 2 0 SCOP 51182 RmlC-like cupins
2 2 1 1 SCOP 52972 ITPase-like
2 2 2 0 SCOP 55008 HMA, heavy metal-associated domain
2 2 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
2 2 2 1 SCOP 51717 Dihydropteroate synthetase-like
2 2 2 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 0 SCOP 50022 ISP domain
2 2 1 1 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
2 2 1 0 SCOP 56954 Outer membrane efflux proteins (OEP)
2 2 2 2 SCOP 53218 Molybdenum cofactor biosynthesis proteins
2 2 2 0 SCOP 54736 ClpS-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 1 1 0 SCOP 111369 HlyD-like secretion proteins
2 2 2 1 SCOP 51391 Thiamin phosphate synthase
2 2 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
2 2 1 1 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 2 0 SCOP 47781 RuvA domain 2-like
2 1 1 0 SCOP 74863 Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
2 2 2 1 SCOP 46565 Chaperone J-domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 0 SCOP 47616 GST C-terminal domain-like
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
2 2 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
2 2 2 1 SCOP 81923 Double Clp-N motif
2 2 2 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 2 1 SCOP 56037 PheT/TilS domain
2 2 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 0 SCOP 142984 Nqo1 middle domain-like
2 2 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
2 2 2 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
2 2 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
2 2 2 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 1 1 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 142019 Nqo1 FMN-binding domain-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 81606 PP2C-like
1 1 1 1 SCOP 142433 CinA-like
1 1 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 0 SCOP 53784 Phosphofructokinase
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 47240 Ferritin-like
1 1 1 1 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 47336 ACP-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 50129 GroES-like
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 0 SCOP 69765 IpsF-like
1 1 1 1 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 48150 DNA-glycosylase
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 101322 YcfC-like
1 1 1 0 SCOP 142695 RibA-like
1 1 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 117991 YbeD/HP0495-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 111148 YggX-like
1 1 1 1 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 0 SCOP 48371 ARM repeat
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 50475 FMN-binding split barrel
1 1 1 0 SCOP 55315 L30e-like
1 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 0 SCOP 81296 E set domains
1 1 1 1 SCOP 102886 Coproporphyrinogen III oxidase
1 1 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
1 1 1 0 SCOP 88723 PIN domain-like
1 1 1 1 SCOP 51445 (Trans)glycosidases
1 1 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 1 SCOP 54506 Diaminopimelate epimerase-like
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 51197 Clavaminate synthase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 55961 Bet v1-like
1 1 1 0 SCOP 52266 SGNH hydrolase
1 1 1 1 SCOP 52151 FabD/lysophospholipase-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 1 SCOP 141734 HisI-like
1 1 1 1 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 1 SCOP 143243 Nqo5-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 55718 SCP-like
1 1 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
1 1 1 0 SCOP 46955 Putative DNA-binding domain
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 0 SCOP 47413 lambda repressor-like DNA-binding domains
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 53807 "Helical backbone" metal receptor
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 50692 ADC-like
1 1 1 0 SCOP 53300 vWA-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 1 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 1 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 56219 DNase I-like
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 110087 DR1885-like metal-binding protein
1 1 1 1 SCOP 103088 OmpA-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 1 SCOP 110069 ApaG-like
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 1 SCOP 143631 ApbE-like
1 1 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 64076 MTH938-like
1 1 1 0 SCOP 140319 IscX-like
1 1 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 103247 TT1751-like
1 1 1 1 SCOP 55846 N-acetylmuramoyl-L-alanine amidase-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 48695 Multiheme cytochromes
1 1 1 0 SCOP 74653 TolA/TonB C-terminal domain
1 1 1 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 52777 CoA-dependent acyltransferases
1 1 1 0 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 1 SCOP 82093 Heme chaperone CcmE
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
1 1 1 0 SCOP 49313 Cadherin-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 1 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 1 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 81665 Calcium ATPase, transmembrane domain M
1 1 1 0 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
1 1 1 0 SCOP 158472 HAMP domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 0 SCOP 47090 PGBD-like
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 52964 TolB, N-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 110111 Ctag/Cox11
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 51120 beta-Roll
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
1 1 1 0 SCOP 47144 HSC20 (HSCB), C-terminal oligomerisation domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 46604 Epsilon subunit of F1F0-ATP synthase C-terminal domain
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 1 SCOP 63882 MoeA N-terminal region -like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 1 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 1 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 69189 Penicillin-binding protein associated domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 141072 CalX-like
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 0 SCOP 81653 Calcium ATPase, transduction domain A
1 1 1 1 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 1 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 74778 Aconitase B, N-terminal domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 109736 FGAM synthase PurL, linker domain
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Polo-box domain
SCOP superfamily Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily C-terminal domain of adenylylcyclase associated protein
SCOP superfamily Bacterial hemolysins
SCOP superfamily Metallothionein
SCOP superfamily Porins
SCOP superfamily Upper collar protein gp10 (connector protein)
SCOP superfamily The spindle assembly checkpoint protein mad2
SCOP superfamily DsbC/DsbG N-terminal domain-like
SCOP superfamily RCC1/BLIP-II
SCOP superfamily Sialidases
SCOP superfamily SH3-domain
SCOP superfamily C-terminal domain of transcriptional repressors
SCOP superfamily Spermadhesin, CUB domain
SCOP superfamily Protein prenylyltransferase
SCOP superfamily t-snare proteins
SCOP superfamily V-type ATPase subunit E-like
SCOP superfamily AF1862-like
SCOP superfamily Rhomboid-like
SCOP superfamily Atu1913-like
SCOP superfamily DNA primase DnaG, C-terminal domain
SCOP superfamily Tsx-like channel
SCOP superfamily (2r)-phospho-3-sulfolactate synthase ComA
SCOP superfamily C-terminal domain of Ku80

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