SUPERFAMILY 1.75 HMM library and genome assignments server

Please note: Superfamily is currently under maintenance and some functionality may be limited. Please bear with us as we fix these problems.


Streptobacillus moniliformis DSM 12112 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Streptobacillus; Streptobacillus moniliformis; Streptobacillus moniliformis DSM 12112

Downloads
Fasta format sequences
Domain assignments


Jump to [ Top of page · Domain assignments ]

Assignment statistics

Sequences: 1442 total
947 (66 %) with assignment
338 average length
60 % amino acid coverage
Domains: 1463 total
466 unique superfamilies
279 unique families
308 average length
3.1 average superfamily size
68 % formed by duplication
Domain combinations: 268 domain pairs
572 unique architectures

Jump to [ Top of page · Assignment statistics ]

Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

148 131 44 9 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
72 22 17 0 SCOP 101967 Adhesin YadA, collagen-binding domain
31 24 19 2 SCOP 50249 Nucleic acid-binding proteins
29 28 10 2 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
27 25 5 1 SCOP 161098 MetI-like
26 26 20 0 SCOP 54523 Pili subunits
21 21 6 1 SCOP 53850 Periplasmic binding protein-like II
20 13 6 2 SCOP 53067 Actin-like ATPase domain
17 16 13 0 SCOP 46785 "Winged helix" DNA-binding domain
17 16 11 5 SCOP 54211 Ribosomal protein S5 domain 2-like
16 16 9 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
15 15 4 0 SCOP 47413 lambda repressor-like DNA-binding domains
14 14 5 2 SCOP 56784 HAD-like
14 14 8 4 SCOP 51445 (Trans)glycosidases
13 13 3 1 SCOP 53474 alpha/beta-Hydrolases
13 13 12 2 SCOP 52374 Nucleotidylyl transferase
13 13 10 2 SCOP 55681 Class II aaRS and biotin synthetases
13 12 6 0 SCOP 51126 Pectin lyase-like
12 12 10 0 SCOP 103088 OmpA-like
11 10 8 0 SCOP 51905 FAD/NAD(P)-binding domain
11 11 3 0 SCOP 55804 Phoshotransferase/anion transport protein
11 11 1 0 SCOP 90123 ABC transporter transmembrane region
10 9 5 3 SCOP 53098 Ribonuclease H-like
10 10 5 1 SCOP 55174 Alpha-L RNA-binding motif
10 9 7 2 SCOP 50447 Translation proteins
9 9 2 0 SCOP 103473 MFS general substrate transporter
9 7 5 0 SCOP 48452 TPR-like
9 9 3 0 SCOP 52794 PTS system IIB component-like
8 8 2 1 SCOP 52833 Thioredoxin-like
8 8 3 2 SCOP 55120 Pseudouridine synthase
8 7 3 5 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
8 8 2 1 SCOP 53822 Periplasmic binding protein-like I
8 4 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
8 4 3 1 SCOP 54980 EF-G C-terminal domain-like
7 7 2 1 SCOP 102114 Radical SAM enzymes
7 5 4 2 SCOP 52096 ClpP/crotonase
7 6 4 0 SCOP 46689 Homeodomain-like
7 7 3 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
7 6 6 0 SCOP 47781 RuvA domain 2-like
6 6 1 2 SCOP 51569 Aldolase
6 6 5 1 SCOP 52317 Class I glutamine amidotransferase-like
6 6 3 2 SCOP 53271 PRTase-like
6 6 1 2 SCOP 53383 PLP-dependent transferases
6 6 3 3 SCOP 75217 alpha/beta knot
6 6 5 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
6 6 5 2 SCOP 53187 Zn-dependent exopeptidases
6 6 5 1 SCOP 109604 HD-domain/PDEase-like
6 6 2 1 SCOP 54001 Cysteine proteinases
6 6 4 0 SCOP 52172 CheY-like
6 5 5 0 SCOP 55021 ACT-like
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 2 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 2 2 SCOP 53697 SIS domain
5 5 5 0 SCOP 56601 beta-lactamase/transpeptidase-like
5 5 4 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
5 5 2 1 SCOP 56349 DNA breaking-rejoining enzymes
5 5 2 1 SCOP 56219 DNase I-like
5 3 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
5 4 4 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 1 0 SCOP 50331 MOP-like
5 5 2 0 SCOP 103515 Autotransporter
5 4 2 1 SCOP 63520 PTS-regulatory domain, PRD
4 4 4 4 SCOP 51556 Metallo-dependent hydrolases
4 4 1 1 SCOP 53613 Ribokinase-like
4 4 2 3 SCOP 51366 Ribulose-phoshate binding barrel
4 4 3 2 SCOP 50104 Translation proteins SH3-like domain
4 4 2 1 SCOP 55920 Creatinase/aminopeptidase
4 4 2 2 SCOP 64182 DHH phosphoesterases
4 4 3 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
4 4 2 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
4 4 2 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
4 4 1 1 SCOP 51395 FMN-linked oxidoreductases
4 4 4 1 SCOP 56672 DNA/RNA polymerases
4 3 3 0 SCOP 81296 E set domains
4 4 3 2 SCOP 74650 Galactose mutarotase-like
4 4 3 0 SCOP 51306 LexA/Signal peptidase
4 4 3 1 SCOP 54631 CBS-domain pair
4 4 3 4 SCOP 51998 PFL-like glycyl radical enzymes
4 2 1 2 SCOP 53901 Thiolase-like
4 4 3 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
4 4 2 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
4 2 2 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
4 4 2 1 SCOP 52922 TK C-terminal domain-like
4 3 3 0 SCOP 116726 TrkA C-terminal domain-like
4 4 2 1 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 4 1 1 SCOP 55060 GHMP Kinase, C-terminal domain
4 4 3 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 2 2 SCOP 53448 Nucleotide-diphospho-sugar transferases
3 3 1 1 SCOP 53167 Purine and uridine phosphorylases
3 3 2 1 SCOP 53927 Cytidine deaminase-like
3 3 2 1 SCOP 56300 Metallo-dependent phosphatases
3 3 2 0 SCOP 47336 ACP-like
3 2 2 0 SCOP 81333 F1F0 ATP synthase subunit C
3 3 2 2 SCOP 53633 Carbamate kinase-like
3 3 2 1 SCOP 51161 Trimeric LpxA-like enzymes
3 3 3 1 SCOP 51261 Duplicated hybrid motif
3 3 3 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
3 3 2 0 SCOP 55811 Nudix
3 3 1 1 SCOP 53254 Phosphoglycerate mutase-like
3 3 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
3 3 2 0 SCOP 55315 L30e-like
3 3 2 1 SCOP 50891 Cyclophilin-like
3 3 1 2 SCOP 51182 RmlC-like cupins
3 3 3 1 SCOP 55781 GAF domain-like
3 3 3 1 SCOP 52954 Class II aaRS ABD-related
3 3 3 0 SCOP 57783 Zinc beta-ribbon
3 3 1 1 SCOP 53807 "Helical backbone" metal receptor
3 3 3 1 SCOP 81301 Nucleotidyltransferase
3 3 1 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
3 3 3 0 SCOP 55604 Glucose permease domain IIB
3 3 2 0 SCOP 52743 Subtilisin-like
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
3 3 2 0 SCOP 56176 FAD-binding/transporter-associated domain-like
3 3 3 1 SCOP 48230 Chondroitin AC/alginate lyase
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 3 1 SCOP 81665 Calcium ATPase, transmembrane domain M
3 3 3 1 SCOP 56037 PheT/TilS domain
3 3 1 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
3 2 2 1 SCOP 56042 PurM C-terminal domain-like
3 2 2 1 SCOP 55326 PurM N-terminal domain-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 3 1 SCOP 81271 TGS-like
3 3 3 0 SCOP 81653 Calcium ATPase, transduction domain A
3 2 2 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
2 2 2 0 SCOP 48013 NusB-like
2 2 1 0 SCOP 55594 HPr-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 0 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 75304 Amidase signature (AS) enzymes
2 2 2 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
2 2 1 2 SCOP 47240 Ferritin-like
2 2 1 1 SCOP 52218 Flavoproteins
2 2 1 1 SCOP 51658 Xylose isomerase-like
2 2 2 1 SCOP 100950 NagB/RpiA/CoA transferase-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 2 2 SCOP 82649 SufE/NifU
2 2 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
2 2 2 1 SCOP 50129 GroES-like
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 1 SCOP 53720 ALDH-like
2 2 1 1 SCOP 48150 DNA-glycosylase
2 2 1 0 SCOP 64307 SirA-like
2 2 1 1 SCOP 56801 Acetyl-CoA synthetase-like
2 2 2 1 SCOP 53328 Formyltransferase
2 2 2 0 SCOP 54534 FKBP-like
2 2 1 0 SCOP 53649 Alkaline phosphatase-like
2 2 1 0 SCOP 54427 NTF2-like
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 1 2 SCOP 52972 ITPase-like
2 2 2 2 SCOP 88713 Glycoside hydrolase/deacetylase
2 2 2 0 SCOP 55008 HMA, heavy metal-associated domain
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 1 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 1 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 0 SCOP 81901 HCP-like
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
2 2 2 0 SCOP 49879 SMAD/FHA domain
2 1 1 0 SCOP 116734 DNA methylase specificity domain
2 2 2 0 SCOP 88697 PUA domain-like
2 2 2 0 SCOP 55826 YbaK/ProRS associated domain
2 2 1 1 SCOP 118215 Proton glutamate symport protein
2 1 1 0 SCOP 63411 LuxS/MPP-like metallohydrolase
2 2 1 0 SCOP 53062 PTS system fructose IIA component-like
2 1 1 0 SCOP 56024 Phospholipase D/nuclease
2 2 2 1 SCOP 50939 Sialidases
2 2 2 1 SCOP 46565 Chaperone J-domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 0 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
2 1 1 0 SCOP 141488 YdhA-like
2 2 1 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 0 SCOP 52440 PreATP-grasp domain
2 2 1 0 SCOP 158472 HAMP domain-like
2 1 1 1 SCOP 53681 Aspartate/glutamate racemase
2 2 2 1 SCOP 48334 DNA repair protein MutS, domain III
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 1 0 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 117892 Band 7/SPFH domain
2 2 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 56112 Protein kinase-like (PK-like)
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 1 SCOP 54197 HIT-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 141091 L21p-like
1 1 1 0 SCOP 118010 TM1457-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 82549 DAK1/DegV-like
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 1 SCOP 48557 L-aspartase-like
1 1 1 0 SCOP 55821 YrdC/RibB
1 1 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 1 1 SCOP 51283 dUTPase-like
1 1 1 0 SCOP 54862 4Fe-4S ferredoxins
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 1 SCOP 51419 PLP-binding barrel
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
1 1 1 0 SCOP 48371 ARM repeat
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 50978 WD40 repeat-like
1 1 1 1 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 0 SCOP 88723 PIN domain-like
1 1 1 1 SCOP 53590 Nucleoside hydrolase
1 1 1 0 SCOP 49785 Galactose-binding domain-like
1 1 1 0 SCOP 48403 Ankyrin repeat
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 1 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 1 SCOP 48208 Six-hairpin glycosidases
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 52266 SGNH hydrolase
1 1 1 0 SCOP 52151 FabD/lysophospholipase-like
1 1 1 0 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 143422 Transposase IS200-like
1 1 1 0 SCOP 52091 SpoIIaa-like
1 1 1 0 SCOP 46955 Putative DNA-binding domain
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 0 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 143120 YefM-like
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 56954 Outer membrane efflux proteins (OEP)
1 1 1 0 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 1 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 1 SCOP 54736 ClpS-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 1 SCOP 53955 Lysozyme-like
1 1 1 1 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 111369 HlyD-like secretion proteins
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
1 1 1 1 SCOP 140478 LemA-like
1 1 1 1 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 1 SCOP 110581 Indigoidine synthase A-like
1 1 1 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 0 SCOP 140683 SP0561-like
1 1 1 0 SCOP 50814 Lipocalins
1 1 1 1 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 0 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 101473 DhaL-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 52309 N-(deoxy)ribosyltransferase-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 1 SCOP 110395 CutC-like
1 1 1 0 SCOP 49452 Starch-binding domain-like
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 0 SCOP 143437 THUMP domain-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 110455 Toprim domain
1 1 1 1 SCOP 52777 CoA-dependent acyltransferases
1 1 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
1 1 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 0 SCOP 69279 Phage tail proteins
1 1 1 0 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 51246 Rudiment single hybrid motif
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 69318 Integrin alpha N-terminal domain
1 1 1 0 SCOP 81923 Double Clp-N motif
1 1 1 1 SCOP 52728 PTS IIb component
1 1 1 0 SCOP 46973 Enzyme IIa from lactose specific PTS, IIa-lac
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 118352 HSP33 redox switch-like
1 1 1 0 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 0 SCOP 160515 YueI-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 50965 Galactose oxidase, central domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
1 1 1 1 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 51011 Glycosyl hydrolase domain
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 0 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
1 1 1 0 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 50151 SacY-like RNA-binding domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 64397 Hsp33 domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 82708 R3H domain
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 1 SCOP 75553 Smc hinge domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 54184 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 49863 Hyaluronate lyase-like, C-terminal domain
1 1 1 1 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like

Jump to [ Top of page · Assignment statistics ]


The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Prokaryotic lipoproteins and lipoprotein localization factors
SCOP superfamily Multidrug efflux transporter AcrB transmembrane domain
SCOP superfamily AlbA-like
SCOP superfamily BRCA2 tower domain
SCOP superfamily PP2C-like
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Small-conductance potassium channel
SCOP superfamily Voltage-gated potassium channels
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily OMPT-like
SCOP superfamily Tricorn protease N-terminal domain
SCOP superfamily gp5 N-terminal domain-like
SCOP superfamily FAT domain of focal adhesion kinase
SCOP superfamily Rho N-terminal domain-like
SCOP superfamily Phase 1 flagellin
SCOP superfamily RNA polymerase subunits
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily Coiled-coil dimerization domain from cortexillin I
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Leucine zipper domain
SCOP superfamily Anthrax protective antigen
SCOP superfamily Leukocidin-like
SCOP superfamily Porins
SCOP superfamily OMPA-like
SCOP superfamily Serpins
SCOP superfamily Monooxygenase (hydroxylase) regulatory protein
SCOP superfamily Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP superfamily CheY-binding domain of CheA
SCOP superfamily Nicotinate/Quinolinate PRTase N-terminal domain-like
SCOP superfamily DNA-binding domain of Mlu1-box binding protein MBP1
SCOP superfamily Cystatin/monellin
SCOP superfamily CAD & PB1 domains
SCOP superfamily Ubiquitin-like
SCOP superfamily DNA-binding domain
SCOP superfamily L domain-like
SCOP superfamily Inorganic pyrophosphatase
SCOP superfamily Cell growth inhibitor/plasmid maintenance toxic component
SCOP superfamily Amine oxidase catalytic domain
SCOP superfamily Concanavalin A-like lectins/glucanases
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Chorismate mutase II
SCOP superfamily Uteroglobin-like
SCOP superfamily Guanido kinase N-terminal domain
SCOP superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
SCOP superfamily Transferrin receptor-like dimerisation domain
SCOP superfamily t-snare proteins
SCOP superfamily EF-hand
SCOP superfamily HLH, helix-loop-helix DNA-binding domain
SCOP superfamily DNA helicase RuvA subunit, C-terminal domain
SCOP superfamily Prefoldin
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily YfgJ-like
SCOP superfamily SNF-like
SCOP superfamily ATP synthase D chain-like
SCOP superfamily AF1531-like
SCOP superfamily SMI1/KNR4-like
SCOP superfamily BT0923-like
SCOP superfamily FlaG-like
SCOP superfamily YkvR-like
SCOP superfamily GINS helical bundle-like
SCOP superfamily BH3980-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily HisI-like
SCOP superfamily Mediator hinge subcomplex-like
SCOP superfamily TM0693-like
SCOP superfamily HP1531-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily SPy1572-like
SCOP superfamily Endosomal sorting complex assembly domain
SCOP superfamily RNA-binding protein She2p
SCOP superfamily OmpH-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily G protein-binding domain
SCOP superfamily TSP type-3 repeat
SCOP superfamily Mitochondrial carrier
SCOP superfamily JAB1/MPN domain
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Superantigen MAM
SCOP superfamily IP3 receptor type 1 binding core, domain 2

Jump to [ Top of page · Assignment statistics ]