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Methylacidiphilum infernorum V4 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; PVC group; Verrucomicrobia; Methylacidiphilae; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum; Methylacidiphilum infernorum; Methylacidiphilum infernorum V4

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 2472 total
1386 (56 %) with assignment
279 average length
62 % amino acid coverage
Domains: 2049 total
584 unique superfamilies
382 unique families
310 average length
3.5 average superfamily size
71 % formed by duplication
Domain combinations: 351 domain pairs
796 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

129 112 54 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
56 56 22 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
54 51 12 2 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
31 30 8 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
29 29 7 4 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
27 19 8 0 SCOP 48452 TPR-like
25 20 16 1 SCOP 50249 Nucleic acid-binding proteins
25 24 4 5 SCOP 53383 PLP-dependent transferases
23 13 7 5 SCOP 53067 Actin-like ATPase domain
22 21 11 2 SCOP 51905 FAD/NAD(P)-binding domain
20 19 4 0 SCOP 56935 Porins
20 10 6 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
19 19 6 1 SCOP 52833 Thioredoxin-like
19 19 10 1 SCOP 53850 Periplasmic binding protein-like II
18 10 8 8 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
18 18 3 2 SCOP 102114 Radical SAM enzymes
18 8 5 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
17 15 8 1 SCOP 46626 Cytochrome c
16 13 11 4 SCOP 54211 Ribosomal protein S5 domain 2-like
15 15 9 0 SCOP 46785 "Winged helix" DNA-binding domain
15 15 5 0 SCOP 46955 Putative DNA-binding domain
14 14 9 3 SCOP 52374 Nucleotidylyl transferase
13 12 8 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
13 13 4 5 SCOP 51569 Aldolase
13 13 5 0 SCOP 56784 HAD-like
13 13 8 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
13 13 9 3 SCOP 51445 (Trans)glycosidases
13 12 4 0 SCOP 111369 HlyD-like secretion proteins
13 8 5 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
12 12 9 1 SCOP 55681 Class II aaRS and biotin synthetases
11 11 5 2 SCOP 53187 Zn-dependent exopeptidases
11 11 5 1 SCOP 52172 CheY-like
11 11 8 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
11 8 8 0 SCOP 55021 ACT-like
10 10 3 0 SCOP 103473 MFS general substrate transporter
10 10 2 1 SCOP 56954 Outer membrane efflux proteins (OEP)
10 9 3 0 SCOP 74653 TolA/TonB C-terminal domain
10 10 4 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
10 7 7 0 SCOP 50156 PDZ domain-like
9 9 4 1 SCOP 52317 Class I glutamine amidotransferase-like
9 8 4 2 SCOP 53271 PRTase-like
9 9 6 0 SCOP 54862 4Fe-4S ferredoxins
9 9 3 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
9 8 6 0 SCOP 46689 Homeodomain-like
9 9 5 3 SCOP 88713 Glycoside hydrolase/deacetylase
9 5 5 0 SCOP 49503 Cupredoxins
9 5 3 0 SCOP 160631 SMI1/KNR4-like
9 9 4 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
8 8 1 0 SCOP 53474 alpha/beta-Hydrolases
8 8 1 4 SCOP 51366 Ribulose-phoshate binding barrel
8 7 7 2 SCOP 50447 Translation proteins
8 8 6 1 SCOP 89550 PHP domain-like
8 6 4 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
8 8 1 0 SCOP 56925 OMPA-like
8 8 5 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
7 7 3 3 SCOP 51556 Metallo-dependent hydrolases
7 7 2 0 SCOP 161098 MetI-like
7 7 3 2 SCOP 53927 Cytidine deaminase-like
7 6 5 3 SCOP 53697 SIS domain
7 7 3 2 SCOP 50129 GroES-like
7 5 3 1 SCOP 52821 Rhodanese/Cell cycle control phosphatase
7 7 5 4 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
7 7 3 1 SCOP 51395 FMN-linked oxidoreductases
7 7 5 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
7 6 5 0 SCOP 81301 Nucleotidyltransferase
7 7 5 0 SCOP 56176 FAD-binding/transporter-associated domain-like
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 3 2 SCOP 53098 Ribonuclease H-like
6 6 4 2 SCOP 51161 Trimeric LpxA-like enzymes
6 6 3 2 SCOP 52096 ClpP/crotonase
6 6 4 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
6 6 4 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
6 6 5 1 SCOP 54534 FKBP-like
6 2 2 0 SCOP 81901 HCP-like
6 6 3 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
6 6 1 0 SCOP 53041 Resolvase-like
6 6 4 0 SCOP 46548 alpha-helical ferredoxin
6 6 3 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
6 6 5 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 3 1 SCOP 54980 EF-G C-terminal domain-like
6 5 3 1 SCOP 52440 PreATP-grasp domain
6 6 5 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
6 5 3 0 SCOP 63380 Riboflavin synthase domain-like
6 2 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 2 3 SCOP 53613 Ribokinase-like
5 5 2 3 SCOP 55120 Pseudouridine synthase
5 5 2 0 SCOP 56300 Metallo-dependent phosphatases
5 5 4 1 SCOP 55174 Alpha-L RNA-binding motif
5 5 3 2 SCOP 53633 Carbamate kinase-like
5 5 2 2 SCOP 53720 ALDH-like
5 5 1 0 SCOP 89360 HesB-like domain
5 5 5 0 SCOP 81296 E set domains
5 5 2 3 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
5 5 2 1 SCOP 81442 Cytochrome c oxidase subunit I-like
5 5 4 0 SCOP 46458 Globin-like
5 5 3 1 SCOP 56601 beta-lactamase/transpeptidase-like
5 5 2 1 SCOP 53807 "Helical backbone" metal receptor
5 5 4 3 SCOP 52467 DHS-like NAD/FAD-binding domain
5 5 2 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
5 3 2 2 SCOP 53901 Thiolase-like
5 5 5 2 SCOP 52922 TK C-terminal domain-like
5 5 4 0 SCOP 81665 Calcium ATPase, transmembrane domain M
5 4 2 1 SCOP 56042 PurM C-terminal domain-like
5 4 2 1 SCOP 55326 PurM N-terminal domain-like
5 5 4 0 SCOP 81653 Calcium ATPase, transduction domain A
4 4 3 0 SCOP 56112 Protein kinase-like (PK-like)
4 3 2 2 SCOP 54197 HIT-like
4 4 2 1 SCOP 52218 Flavoproteins
4 4 2 3 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
4 4 3 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
4 4 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 4 2 2 SCOP 56770 HydA/Nqo6-like
4 4 4 0 SCOP 54292 2Fe-2S ferredoxin-like
4 4 2 0 SCOP 55811 Nudix
4 4 1 1 SCOP 53254 Phosphoglycerate mutase-like
4 4 3 1 SCOP 48576 Terpenoid synthases
4 4 3 1 SCOP 51419 PLP-binding barrel
4 4 1 1 SCOP 54001 Cysteine proteinases
4 4 2 2 SCOP 51182 RmlC-like cupins
4 3 3 0 SCOP 55781 GAF domain-like
4 4 3 0 SCOP 52954 Class II aaRS ABD-related
4 4 4 1 SCOP 50494 Trypsin-like serine proteases
4 4 4 1 SCOP 51230 Single hybrid motif
4 4 2 0 SCOP 50022 ISP domain
4 4 2 1 SCOP 54913 GlnB-like
4 4 3 2 SCOP 56762 HydB/Nqo4-like
4 4 2 1 SCOP 103088 OmpA-like
4 1 1 0 SCOP 63411 LuxS/MPP-like metallohydrolase
4 3 3 1 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
4 4 4 1 SCOP 47781 RuvA domain 2-like
4 4 2 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
4 4 2 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
4 4 4 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
4 4 2 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
4 3 3 1 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
4 3 2 0 SCOP 54106 LysM domain
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 4 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
4 4 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
4 2 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
4 4 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
3 3 3 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
3 3 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
3 3 2 1 SCOP 47240 Ferritin-like
3 3 2 2 SCOP 75217 alpha/beta knot
3 3 3 0 SCOP 52980 Restriction endonuclease-like
3 3 1 1 SCOP 48557 L-aspartase-like
3 3 3 2 SCOP 55821 YrdC/RibB
3 3 3 2 SCOP 48150 DNA-glycosylase
3 3 1 0 SCOP 54285 MoaD/ThiS
3 3 1 2 SCOP 56655 Carbohydrate phosphatase
3 3 1 0 SCOP 75169 DsrEFH-like
3 3 2 2 SCOP 50475 FMN-binding split barrel
3 3 2 1 SCOP 51430 NAD(P)-linked oxidoreductase
3 3 2 1 SCOP 56801 Acetyl-CoA synthetase-like
3 3 2 0 SCOP 109604 HD-domain/PDEase-like
3 3 2 0 SCOP 50630 Acid proteases
3 3 3 1 SCOP 74650 Galactose mutarotase-like
3 3 3 0 SCOP 56317 Carbon-nitrogen hydrolase
3 3 2 0 SCOP 51126 Pectin lyase-like
3 3 2 0 SCOP 48208 Six-hairpin glycosidases
3 3 3 0 SCOP 55008 HMA, heavy metal-associated domain
3 3 2 0 SCOP 55961 Bet v1-like
3 3 2 0 SCOP 52788 Phosphotyrosine protein phosphatases I
3 3 3 3 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 2 0 SCOP 144091 Rhomboid-like
3 3 3 2 SCOP 53795 PEP carboxykinase-like
3 3 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
3 3 3 1 SCOP 54909 Dimeric alpha+beta barrel
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 3 3 0 SCOP 47413 lambda repressor-like DNA-binding domains
3 3 3 0 SCOP 50692 ADC-like
3 3 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 3 3 2 SCOP 103025 Folate-binding domain
3 2 2 0 SCOP 101386 all-alpha NTP pyrophosphatases
3 2 2 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 2 0 SCOP 140931 Fic-like
3 3 3 0 SCOP 55785 PYP-like sensor domain (PAS domain)
3 2 2 0 SCOP 50939 Sialidases
3 3 3 1 SCOP 48695 Multiheme cytochromes
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 1 1 SCOP 51246 Rudiment single hybrid motif
3 3 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 3 2 0 SCOP 52009 Phosphohistidine domain
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 3 0 SCOP 51011 Glycosyl hydrolase domain
3 3 3 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
3 2 2 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 1 SCOP 53790 Tetrapyrrole methylase
2 2 2 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 75304 Amidase signature (AS) enzymes
2 2 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 2 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 1 1 SCOP 51658 Xylose isomerase-like
2 2 1 1 SCOP 100950 NagB/RpiA/CoA transferase-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 1 SCOP 82649 SufE/NifU
2 2 1 0 SCOP 47729 IHF-like DNA-binding proteins
2 2 2 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 2 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
2 2 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
2 2 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 1 SCOP 51730 FAD-linked oxidoreductase
2 2 2 0 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 2 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
2 2 2 1 SCOP 55205 EPT/RTPC-like
2 1 1 0 SCOP 81452 Cytochrome c oxidase subunit III-like
2 2 2 1 SCOP 52949 Macro domain-like
2 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
2 2 2 1 SCOP 56672 DNA/RNA polymerases
2 1 1 1 SCOP 51726 UROD/MetE-like
2 2 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
2 2 2 1 SCOP 88723 PIN domain-like
2 2 2 1 SCOP 53328 Formyltransferase
2 2 1 1 SCOP 56322 ADC synthase
2 2 1 0 SCOP 52499 Isochorismatase-like hydrolases
2 1 1 1 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 2 1 0 SCOP 54928 RNA-binding domain, RBD
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 1 1 0 SCOP 54919 Nucleoside diphosphate kinase, NDK
2 2 2 0 SCOP 110849 ParB/Sulfiredoxin
2 1 1 1 SCOP 48113 Heme-dependent peroxidases
2 2 1 1 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 2 0 SCOP 54631 CBS-domain pair
2 2 1 1 SCOP 111038 YjbQ-like
2 2 2 1 SCOP 102405 MCP/YpsA-like
2 2 2 0 SCOP 143243 Nqo5-like
2 2 2 0 SCOP 81324 Voltage-gated potassium channels
2 2 2 0 SCOP 52091 SpoIIaa-like
2 2 1 1 SCOP 51717 Dihydropteroate synthetase-like
2 2 2 1 SCOP 51998 PFL-like glycyl radical enzymes
2 2 2 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
2 2 2 1 SCOP 56349 DNA breaking-rejoining enzymes
2 2 1 0 SCOP 53300 vWA-like
2 2 1 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 0 SCOP 54736 ClpS-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 2 0 SCOP 88697 PUA domain-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 2 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
2 2 1 0 SCOP 143430 TTP0101/SSO1404-like
2 2 2 0 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 2 1 SCOP 50486 FMT C-terminal domain-like
2 2 2 0 SCOP 103196 Roadblock/LC7 domain
2 2 2 0 SCOP 53146 Nitrogenase accessory factor-like
2 1 1 1 SCOP 56024 Phospholipase D/nuclease
2 2 2 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 2 1 SCOP 46565 Chaperone J-domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 0 SCOP 52490 Tubulin nucleotide-binding domain-like
2 2 2 1 SCOP 52777 CoA-dependent acyltransferases
2 2 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 1 SCOP 90123 ABC transporter transmembrane region
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 1 0 SCOP 81923 Double Clp-N motif
2 1 1 0 SCOP 49344 CBD9-like
2 2 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 0 SCOP 81336 F1F0 ATP synthase subunit A
2 2 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
2 2 1 1 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
2 2 2 1 SCOP 140990 FtsH protease domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 0 SCOP 142984 Nqo1 middle domain-like
2 2 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
2 2 2 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 2 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
2 2 2 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 2 2 0 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 2 0 SCOP 140490 Nqo1C-terminal domain-like
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 2 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
2 2 2 1 SCOP 142019 Nqo1 FMN-binding domain-like
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 81338 Aquaporin-like
1 1 1 0 SCOP 55594 HPr-like
1 1 1 0 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 143597 YojJ-like
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 81606 PP2C-like
1 1 1 1 SCOP 142433 CinA-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 47336 ACP-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 142695 RibA-like
1 1 1 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 0 SCOP 64307 SirA-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 48371 ARM repeat
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 0 SCOP 63829 Calcium-dependent phosphotriesterase
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 48613 Heme oxygenase-like
1 1 1 1 SCOP 69500 DTD-like
1 1 1 1 SCOP 53590 Nucleoside hydrolase
1 1 1 0 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 55248 PCD-like
1 1 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 0 SCOP 51645 Malate synthase G
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 0 SCOP 50044 SH3-domain
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 1 SCOP 52151 FabD/lysophospholipase-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 52768 Arginase/deacetylase
1 1 1 1 SCOP 103378 2-methylcitrate dehydratase PrpD
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 1 SCOP 55239 RuBisCO, small subunit
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 0 SCOP 143011 RelE-like
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 1 SCOP 56524 Oxidoreductase molybdopterin-binding domain
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 55797 PR-1-like
1 1 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 51206 cAMP-binding domain-like
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 0 SCOP 159501 EreA/ChaN-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 53955 Lysozyme-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 1 SCOP 143081 BB1717-like
1 1 1 1 SCOP 159245 AttH-like
1 1 1 1 SCOP 117396 TM1631-like
1 1 1 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 1 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
1 1 1 1 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
1 1 1 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 49472 Transthyretin (synonym: prealbumin)
1 1 1 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
1 1 1 0 SCOP 110069 ApaG-like
1 1 1 0 SCOP 55804 Phoshotransferase/anion transport protein
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 111384 OmpH-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 0 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 159203 NifT/FixU-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 103247 TT1751-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 50974 Nitrous oxide reductase, N-terminal domain
1 1 1 0 SCOP 89807 Dodecin-like
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 56003 Molybdenum cofactor-binding domain
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 101898 NHL repeat
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 1 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 47077 T4 endonuclease V
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 102110 (2r)-phospho-3-sulfolactate synthase ComA
1 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 55234 Cyanase C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 81935 N-terminal domain of bifunctional PutA protein
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 116726 TrkA C-terminal domain-like
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 56037 PheT/TilS domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 52964 TolB, N-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 1 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 1 SCOP 63882 MoeA N-terminal region -like
1 1 1 0 SCOP 55945 TATA-box binding protein-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 75516 Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
1 1 1 0 SCOP 47741 CO dehydrogenase ISP C-domain like
1 1 1 0 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
1 1 1 1 SCOP 57561 Methylamine dehydrogenase, L chain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 159283 Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 1 SCOP 81271 TGS-like
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 1 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 1 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 1 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like
1 1 1 0 SCOP 82653 Probable GTPase Der, C-terminal domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Prokaryotic lipoproteins and lipoprotein localization factors
SCOP superfamily Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP superfamily R3H domain
SCOP superfamily Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP superfamily PAP/OAS1 substrate-binding domain
SCOP superfamily Subunit III of photosystem I reaction centre, PsaF
SCOP superfamily Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily Cytochrome c oxidase subunit II-like, transmembrane region
SCOP superfamily Mitochondrial cytochrome c oxidase subunit IV
SCOP superfamily Clc chloride channel
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily YhbY-like
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Arp2/3 complex 21 kDa subunit ARPC3
SCOP superfamily RecG, N-terminal domain
SCOP superfamily BAG domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Bacterial hemolysins
SCOP superfamily SNARE fusion complex
SCOP superfamily Tropomyosin
SCOP superfamily RING/U-box
SCOP superfamily Rubredoxin-like
SCOP superfamily Leech antihemostatic proteins
SCOP superfamily eIF4e-like
SCOP superfamily RPB5-like RNA polymerase subunit
SCOP superfamily GYF domain
SCOP superfamily Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
SCOP superfamily N-(deoxy)ribosyltransferase-like
SCOP superfamily Cobalamin (vitamin B12)-binding domain
SCOP superfamily Toll/Interleukin receptor TIR domain
SCOP superfamily PH domain-like
SCOP superfamily ENV polyprotein, receptor-binding domain
SCOP superfamily Galactose-binding domain-like
SCOP superfamily Purple acid phosphatase, N-terminal domain
SCOP superfamily Guanido kinase N-terminal domain
SCOP superfamily ERP29 C domain-like
SCOP superfamily lambda integrase-like, N-terminal domain
SCOP superfamily Rad51 N-terminal domain-like
SCOP superfamily t-snare proteins
SCOP superfamily Apolipoprotein
SCOP superfamily RAP domain-like
SCOP superfamily Tubulin chaperone cofactor A
SCOP superfamily Spectrin repeat
SCOP superfamily Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP superfamily Prefoldin
SCOP superfamily CHY zinc finger-like
SCOP superfamily ATP synthase B chain-like
SCOP superfamily Photosystem II 10 kDa phosphoprotein PsbH
SCOP superfamily BT0923-like
SCOP superfamily V-type ATPase subunit E-like
SCOP superfamily RPA2825-like
SCOP superfamily RbcX-like
SCOP superfamily HAMP domain-like
SCOP superfamily FdhE-like
SCOP superfamily CcmK-like
SCOP superfamily MFPT repeat-like
SCOP superfamily FimD N-terminal domain-like
SCOP superfamily LemA-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily GTF2I-like repeat
SCOP superfamily MIT domain
SCOP superfamily CbiD-like
SCOP superfamily YgfY-like
SCOP superfamily Bacteriocin immunity protein-like
SCOP superfamily DNA polymerase III chi subunit
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Nonstructural protein ns2, Nep, M1-binding domain

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