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Helicobacter cinaedi PAGU611 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter cinaedi; Helicobacter cinaedi PAGU611

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 2125 total
1317 (62 %) with assignment
299 average length
59 % amino acid coverage
Domains: 1828 total
562 unique superfamilies
329 unique families
283 average length
3.3 average superfamily size
69 % formed by duplication
Domain combinations: 299 domain pairs
746 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

137 121 50 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
83 80 14 5 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
61 58 20 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
33 32 11 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
27 27 2 3 SCOP 102114 Radical SAM enzymes
26 20 16 2 SCOP 50249 Nucleic acid-binding proteins
20 20 3 3 SCOP 53383 PLP-dependent transferases
19 18 3 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
18 12 7 4 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
18 15 12 6 SCOP 54211 Ribosomal protein S5 domain 2-like
16 16 12 3 SCOP 52374 Nucleotidylyl transferase
16 9 6 3 SCOP 53067 Actin-like ATPase domain
16 15 5 1 SCOP 53850 Periplasmic binding protein-like II
15 15 3 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
14 14 4 3 SCOP 51161 Trimeric LpxA-like enzymes
13 13 3 1 SCOP 161098 MetI-like
13 12 5 1 SCOP 56935 Porins
12 11 8 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
12 12 7 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
12 12 9 1 SCOP 55681 Class II aaRS and biotin synthetases
12 12 7 0 SCOP 52172 CheY-like
12 12 5 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
11 11 6 0 SCOP 46785 "Winged helix" DNA-binding domain
11 11 4 0 SCOP 54862 4Fe-4S ferredoxins
11 9 9 0 SCOP 55021 ACT-like
10 10 6 2 SCOP 52317 Class I glutamine amidotransferase-like
10 10 3 1 SCOP 52833 Thioredoxin-like
10 7 6 0 SCOP 48452 TPR-like
10 10 2 1 SCOP 53649 Alkaline phosphatase-like
10 7 4 1 SCOP 46626 Cytochrome c
10 3 2 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
9 9 5 7 SCOP 51569 Aldolase
9 9 3 1 SCOP 51905 FAD/NAD(P)-binding domain
9 9 5 1 SCOP 56784 HAD-like
9 9 2 1 SCOP 56801 Acetyl-CoA synthetase-like
9 8 8 2 SCOP 50447 Translation proteins
9 9 5 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
9 7 4 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
9 6 3 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
8 7 3 4 SCOP 51366 Ribulose-phoshate binding barrel
8 7 5 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
8 6 4 1 SCOP 81901 HCP-like
7 7 3 0 SCOP 53474 alpha/beta-Hydrolases
7 7 4 1 SCOP 55120 Pseudouridine synthase
7 7 2 0 SCOP 56300 Metallo-dependent phosphatases
7 7 4 1 SCOP 53098 Ribonuclease H-like
7 7 3 0 SCOP 103473 MFS general substrate transporter
7 7 3 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
7 7 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
7 7 6 1 SCOP 53328 Formyltransferase
7 6 4 1 SCOP 52440 PreATP-grasp domain
6 6 3 2 SCOP 53271 PRTase-like
6 6 4 1 SCOP 55174 Alpha-L RNA-binding motif
6 6 3 0 SCOP 51261 Duplicated hybrid motif
6 6 4 2 SCOP 53187 Zn-dependent exopeptidases
6 5 5 2 SCOP 109604 HD-domain/PDEase-like
6 6 1 0 SCOP 143011 RelE-like
6 6 4 1 SCOP 53955 Lysozyme-like
6 4 4 1 SCOP 56024 Phospholipase D/nuclease
6 6 3 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 3 1 SCOP 54980 EF-G C-terminal domain-like
6 6 2 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
6 6 3 0 SCOP 52922 TK C-terminal domain-like
6 5 2 1 SCOP 56042 PurM C-terminal domain-like
6 5 2 1 SCOP 55326 PurM N-terminal domain-like
6 2 1 1 SCOP 53738 Phosphoglucomutase, first 3 domains
6 3 2 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
5 5 4 1 SCOP 50104 Translation proteins SH3-like domain
5 5 2 2 SCOP 47240 Ferritin-like
5 5 2 5 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
5 5 3 2 SCOP 75217 alpha/beta knot
5 5 4 3 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
5 5 2 3 SCOP 52096 ClpP/crotonase
5 5 3 1 SCOP 64518 Phase 1 flagellin
5 5 4 1 SCOP 51419 PLP-binding barrel
5 5 4 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
5 4 3 1 SCOP 50475 FMN-binding split barrel
5 5 3 0 SCOP 55008 HMA, heavy metal-associated domain
5 5 4 1 SCOP 50341 CheW-like
5 3 3 0 SCOP 57783 Zinc beta-ribbon
5 4 3 1 SCOP 111369 HlyD-like secretion proteins
5 3 2 1 SCOP 63411 LuxS/MPP-like metallohydrolase
5 3 3 2 SCOP 53901 Thiolase-like
5 5 4 1 SCOP 46548 alpha-helical ferredoxin
5 5 3 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 4 3 0 SCOP 50156 PDZ domain-like
5 5 4 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
5 5 3 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 4 2 2 SCOP 51556 Metallo-dependent hydrolases
4 4 2 3 SCOP 53697 SIS domain
4 4 1 0 SCOP 47336 ACP-like
4 4 4 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
4 4 2 2 SCOP 53633 Carbamate kinase-like
4 4 2 2 SCOP 56770 HydA/Nqo6-like
4 4 2 0 SCOP 117143 Flagellar hook protein flgE
4 4 3 0 SCOP 88723 PIN domain-like
4 4 4 1 SCOP 54534 FKBP-like
4 4 2 0 SCOP 56317 Carbon-nitrogen hydrolase
4 4 2 0 SCOP 88713 Glycoside hydrolase/deacetylase
4 4 3 0 SCOP 52266 SGNH hydrolase
4 4 3 1 SCOP 81342 Transmembrane di-heme cytochromes
4 4 4 0 SCOP 56601 beta-lactamase/transpeptidase-like
4 4 3 2 SCOP 81301 Nucleotidyltransferase
4 4 3 2 SCOP 50692 ADC-like
4 4 2 1 SCOP 56954 Outer membrane efflux proteins (OEP)
4 4 2 0 SCOP 103088 OmpA-like
4 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 2 0 SCOP 140931 Fic-like
4 4 1 0 SCOP 56925 OMPA-like
4 4 3 0 SCOP 103515 Autotransporter
4 4 4 0 SCOP 56176 FAD-binding/transporter-associated domain-like
4 4 1 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
4 4 3 1 SCOP 50621 Alanine racemase C-terminal domain-like
4 2 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
3 3 3 1 SCOP 56731 DNA primase core
3 3 3 1 SCOP 53927 Cytidine deaminase-like
3 3 3 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
3 3 1 1 SCOP 52218 Flavoproteins
3 3 2 0 SCOP 100950 NagB/RpiA/CoA transferase-like
3 3 1 1 SCOP 48557 L-aspartase-like
3 3 3 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
3 3 3 1 SCOP 55821 YrdC/RibB
3 3 1 2 SCOP 53720 ALDH-like
3 3 2 2 SCOP 48150 DNA-glycosylase
3 2 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
3 3 3 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
3 2 2 1 SCOP 56796 Dehydroquinate synthase-like
3 2 2 2 SCOP 51726 UROD/MetE-like
3 3 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
3 3 3 0 SCOP 54001 Cysteine proteinases
3 3 3 0 SCOP 48403 Ankyrin repeat
3 3 2 1 SCOP 51182 RmlC-like cupins
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 3 3 0 SCOP 54631 CBS-domain pair
3 3 2 0 SCOP 46955 Putative DNA-binding domain
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 3 3 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
3 3 1 0 SCOP 56349 DNA breaking-rejoining enzymes
3 3 1 0 SCOP 51206 cAMP-binding domain-like
3 3 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 3 1 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
3 2 2 1 SCOP 116734 DNA methylase specificity domain
3 3 1 1 SCOP 161070 SNF-like
3 3 3 0 SCOP 101801 Surface presentation of antigens (SPOA)
3 3 2 0 SCOP 50486 FMT C-terminal domain-like
3 3 3 0 SCOP 47781 RuvA domain 2-like
3 3 2 1 SCOP 48695 Multiheme cytochromes
3 3 3 0 SCOP 103039 CheC-like
3 3 1 0 SCOP 74653 TolA/TonB C-terminal domain
3 3 3 0 SCOP 46565 Chaperone J-domain
3 3 3 1 SCOP 90123 ABC transporter transmembrane region
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 1 1 SCOP 51246 Rudiment single hybrid motif
3 3 3 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
3 3 3 0 SCOP 103190 Sensory domain-like
3 3 3 0 SCOP 52009 Phosphohistidine domain
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 1 1 0 SCOP 49265 Fibronectin type III
3 3 3 0 SCOP 110997 Sporulation related repeat
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
3 3 2 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 1 SCOP 53167 Purine and uridine phosphorylases
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 0 SCOP 53613 Ribokinase-like
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 0 SCOP 54197 HIT-like
2 2 2 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 1 SCOP 64182 DHH phosphoesterases
2 2 1 0 SCOP 89447 AbrB/MazE/MraZ-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 0 SCOP 52980 Restriction endonuclease-like
2 2 2 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 2 1 SCOP 50129 GroES-like
2 1 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 0 SCOP 51730 FAD-linked oxidoreductase
2 2 1 1 SCOP 51283 dUTPase-like
2 2 1 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 1 SCOP 54292 2Fe-2S ferredoxin-like
2 2 1 0 SCOP 55811 Nudix
2 2 1 0 SCOP 54285 MoaD/ThiS
2 2 2 1 SCOP 142695 RibA-like
2 2 1 1 SCOP 56655 Carbohydrate phosphatase
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 2 1 SCOP 51395 FMN-linked oxidoreductases
2 2 2 0 SCOP 46689 Homeodomain-like
2 2 2 1 SCOP 54060 His-Me finger endonucleases
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 2 0 SCOP 50182 Sm-like ribonucleoproteins
2 2 1 1 SCOP 48256 Citrate synthase
2 2 1 1 SCOP 56634 Heme-dependent catalase-like
2 2 2 1 SCOP 56322 ADC synthase
2 2 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 1 1 0 SCOP 51197 Clavaminate synthase-like
2 2 2 0 SCOP 110849 ParB/Sulfiredoxin
2 2 2 1 SCOP 52151 FabD/lysophospholipase-like
2 2 2 0 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 1 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 0 SCOP 81324 Voltage-gated potassium channels
2 2 2 1 SCOP 51717 Dihydropteroate synthetase-like
2 2 2 0 SCOP 141571 Pentapeptide repeat-like
2 2 2 0 SCOP 47598 Ribbon-helix-helix
2 2 1 0 SCOP 54523 Pili subunits
2 2 1 1 SCOP 53807 "Helical backbone" metal receptor
2 2 2 0 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 1 SCOP 51679 Bacterial luciferase-like
2 2 2 0 SCOP 89550 PHP domain-like
2 2 1 0 SCOP 55166 Hedgehog/DD-peptidase
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 2 SCOP 56762 HydB/Nqo4-like
2 2 2 1 SCOP 54736 ClpS-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 1 1 SCOP 56219 DNase I-like
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 1 1 SCOP 51391 Thiamin phosphate synthase
2 2 1 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 1 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
2 2 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
2 2 1 0 SCOP 141457 BH3618-like
2 2 1 0 SCOP 101874 YceI-like
2 2 2 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 2 0 SCOP 69349 Phage fibre proteins
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 2 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
2 2 1 0 SCOP 50370 Ricin B-like lectins
2 2 1 0 SCOP 81923 Double Clp-N motif
2 2 2 0 SCOP 160544 EscU C-terminal domain-like
2 2 1 0 SCOP 159006 YopX-like
2 2 1 0 SCOP 47188 Hemerythrin-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 1 SCOP 51971 Nucleotide-binding domain
2 1 1 1 SCOP 53681 Aspartate/glutamate racemase
2 2 2 0 SCOP 116726 TrkA C-terminal domain-like
2 1 1 1 SCOP 48029 FliG
2 2 1 1 SCOP 140990 FtsH protease domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 1 1 0 SCOP 143968 UbiD C-terminal domain-like
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
2 2 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
2 2 2 1 SCOP 143548 Serine metabolism enzymes domain
2 2 1 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
2 1 1 0 SCOP 63380 Riboflavin synthase domain-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 0 SCOP 63882 MoeA N-terminal region -like
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 2 2 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 2 2 0 SCOP 69255 gp5 N-terminal domain-like
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 2 1 0 SCOP 51269 AFP III-like domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 89000 post-HMGL domain-like
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 1 SCOP 142433 CinA-like
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 51658 Xylose isomerase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 111337 QueA-like
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 117130 CsrA-like
1 1 1 0 SCOP 64307 SirA-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 117991 YbeD/HP0495-like
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 75169 DsrEFH-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 48371 ARM repeat
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 0 SCOP 47473 EF-hand
1 1 1 0 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 50978 WD40 repeat-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 1 SCOP 50891 Cyclophilin-like
1 1 1 0 SCOP 54427 NTF2-like
1 1 1 0 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 0 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
1 1 1 0 SCOP 51445 (Trans)glycosidases
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 0 SCOP 52972 ITPase-like
1 1 1 0 SCOP 51126 Pectin lyase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 1 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 56529 FAH
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 103378 2-methylcitrate dehydratase PrpD
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 46458 Globin-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 55073 Nucleotide cyclase
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 0 SCOP 55718 SCP-like
1 1 1 0 SCOP 54909 Dimeric alpha+beta barrel
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 143100 TTHA1013/TTHA0281-like
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 50022 ISP domain
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 158682 TerB-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 109854 DinB/YfiT-like putative metalloenzymes
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 159894 YgaC/TfoX-N like
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 0 SCOP 49879 SMAD/FHA domain
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 160719 gpW/gp25-like
1 1 1 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
1 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
1 1 1 0 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 0 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
1 1 1 0 SCOP 102588 LmbE-like
1 1 1 0 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 159594 XCC0632-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 101116 Flagellar export chaperone FliS
1 1 1 0 SCOP 53041 Resolvase-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 69917 OMPT-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 89155 TorD-like
1 1 1 0 SCOP 101498 Anti-sigma factor FlgM
1 1 1 1 SCOP 52738 Methylesterase CheB, C-terminal domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 75708 Chemotaxis phosphatase CheZ
1 1 1 0 SCOP 53933 Microbial ribonucleases
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 141452 Hcp1-like
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 69279 Phage tail proteins
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 160214 FlaG-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 0 SCOP 82057 Prokaryotic SH3-related domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 54106 LysM domain
1 1 1 1 SCOP 56931 Outer membrane phospholipase A (OMPLA)
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 158752 HP0242-like
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 0 SCOP 52964 TolB, N-terminal domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 51984 MurCD N-terminal domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 140496 HP1531-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 74778 Aconitase B, N-terminal domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 1 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily eEF1-gamma domain
SCOP superfamily DNA-binding protein Tfx
SCOP superfamily Proguanylin
SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily SEA domain
SCOP superfamily SET domain
SCOP superfamily beta-catenin-interacting protein ICAT
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Photosystem I reaction center subunit XI, PsaL
SCOP superfamily Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
SCOP superfamily Clc chloride channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Rotavirus NSP2 fragment, C-terminal domain
SCOP superfamily Cullin repeat-like
SCOP superfamily NSP3 homodimer
SCOP superfamily Cell wall binding repeat
SCOP superfamily Intermediate filament protein, coiled coil region
SCOP superfamily Olfactory marker protein
SCOP superfamily Flagellar transcriptional activator FlhD
SCOP superfamily PTS-regulatory domain, PRD
SCOP superfamily Outer surface protein C (OspC)
SCOP superfamily Fumarylacetoacetate hydrolase, FAH, N-terminal domain
SCOP superfamily MurE/MurF N-terminal domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily N-terminal coiled coil domain from apc
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Tropomyosin
SCOP superfamily Cysteine-rich domain
SCOP superfamily Metallothionein
SCOP superfamily RING/U-box
SCOP superfamily Crisp domain-like
SCOP superfamily Sec1/munc18-like (SM) proteins
SCOP superfamily Sporulation response regulatory protein Spo0B
SCOP superfamily LigT-like
SCOP superfamily YcfA/nrd intein domain
SCOP superfamily Staphylokinase/streptokinase
SCOP superfamily SpoIIaa-like
SCOP superfamily Carbonic anhydrase
SCOP superfamily Carbohydrate binding domain
SCOP superfamily Galactose oxidase, central domain
SCOP superfamily Sialidases
SCOP superfamily PRC-barrel domain
SCOP superfamily SH3-domain
SCOP superfamily Moesin tail domain
SCOP superfamily Fe-only hydrogenase smaller subunit
SCOP superfamily Tetracyclin repressor-like, C-terminal domain
SCOP superfamily Aldehyde ferredoxin oxidoreductase, C-terminal domains
SCOP superfamily Chondroitin AC/alginate lyase
SCOP superfamily DBL homology domain (DH-domain)
SCOP superfamily Di-copper centre-containing domain
SCOP superfamily t-snare proteins
SCOP superfamily lambda repressor-like DNA-binding domains
SCOP superfamily Proteasome activator
SCOP superfamily TMV-like viral coat proteins
SCOP superfamily Acyl-CoA binding protein
SCOP superfamily Spectrin repeat
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily CHY zinc finger-like
SCOP superfamily SSO1389-like
SCOP superfamily V-type ATPase subunit E-like
SCOP superfamily Cation efflux protein cytoplasmic domain-like
SCOP superfamily UraD-Like
SCOP superfamily HAMP domain-like
SCOP superfamily TM1646-like
SCOP superfamily occludin/ELL-like
SCOP superfamily Heterotrimerisation domain of extracellular hemoglobin linker subunits
SCOP superfamily CSL zinc finger
SCOP superfamily YbiA-like
SCOP superfamily YwmB-like
SCOP superfamily Coronavirus NSP8-like
SCOP superfamily GatD N-terminal domain-like
SCOP superfamily Kinase-associated protein B-like
SCOP superfamily IpaD-like
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily FlgN-like
SCOP superfamily MAST3 pre-PK domain-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily MxiH-like
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily OmpH-like
SCOP superfamily Ligand-binding domain in the NO signalling and Golgi transport
SCOP superfamily AbfB domain
SCOP superfamily Surp module (SWAP domain)
SCOP superfamily Fungal immunomodulatory protein, FIP
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily HAND domain of the nucleosome remodeling ATPase ISWI
SCOP superfamily Oxygen-evolving enhancer protein 3,
SCOP superfamily Typo IV secretion system protein TraC
SCOP superfamily IP3 receptor type 1 binding core, domain 2

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