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Campylobacter sp. 03-427 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter fetus; Campylobacter fetus subsp. testudinum; Campylobacter fetus subsp. testudinum 03-427

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1695 total
1236 (73 %) with assignment
319 average length
65 % amino acid coverage
Domains: 1748 total
566 unique superfamilies
349 unique families
285 average length
3.1 average superfamily size
68 % formed by duplication
Domain combinations: 309 domain pairs
720 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

134 120 44 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
37 37 17 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
33 33 7 1 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
26 25 3 0 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
25 18 15 2 SCOP 50249 Nucleic acid-binding proteins
22 22 2 3 SCOP 102114 Radical SAM enzymes
20 20 11 0 SCOP 46785 "Winged helix" DNA-binding domain
19 19 5 1 SCOP 53850 Periplasmic binding protein-like II
19 15 7 1 SCOP 46626 Cytochrome c
18 15 12 6 SCOP 54211 Ribosomal protein S5 domain 2-like
18 17 8 0 SCOP 52172 CheY-like
17 16 3 1 SCOP 161098 MetI-like
17 9 5 3 SCOP 53067 Actin-like ATPase domain
17 17 2 3 SCOP 53383 PLP-dependent transferases
17 16 6 0 SCOP 54862 4Fe-4S ferredoxins
16 16 12 3 SCOP 52374 Nucleotidylyl transferase
14 14 3 1 SCOP 52833 Thioredoxin-like
14 14 8 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
13 8 4 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
13 13 3 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
12 12 5 3 SCOP 53448 Nucleotide-diphospho-sugar transferases
12 12 6 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
12 12 9 1 SCOP 55681 Class II aaRS and biotin synthetases
12 12 6 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
11 11 6 1 SCOP 51905 FAD/NAD(P)-binding domain
11 11 5 2 SCOP 56784 HAD-like
11 8 6 6 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
11 11 2 0 SCOP 103473 MFS general substrate transporter
11 11 4 1 SCOP 56935 Porins
11 10 3 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
11 9 9 0 SCOP 55021 ACT-like
10 9 8 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
10 10 5 6 SCOP 51569 Aldolase
10 10 3 1 SCOP 48695 Multiheme cytochromes
9 6 4 0 SCOP 48452 TPR-like
9 8 8 2 SCOP 50447 Translation proteins
9 9 6 1 SCOP 55073 Nucleotide cyclase
9 9 2 0 SCOP 54523 Pili subunits
8 8 5 1 SCOP 52317 Class I glutamine amidotransferase-like
8 8 3 2 SCOP 53271 PRTase-like
7 7 1 4 SCOP 51366 Ribulose-phoshate binding barrel
7 7 4 4 SCOP 55120 Pseudouridine synthase
7 7 3 2 SCOP 53098 Ribonuclease H-like
7 7 4 4 SCOP 51161 Trimeric LpxA-like enzymes
7 4 4 0 SCOP 55785 PYP-like sensor domain (PAS domain)
7 6 5 1 SCOP 52440 PreATP-grasp domain
6 6 4 1 SCOP 55174 Alpha-L RNA-binding motif
6 6 2 2 SCOP 48557 L-aspartase-like
6 5 3 1 SCOP 64518 Phase 1 flagellin
6 4 4 0 SCOP 46689 Homeodomain-like
6 6 5 3 SCOP 53187 Zn-dependent exopeptidases
6 6 5 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
6 6 2 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
6 4 3 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
6 4 4 0 SCOP 50156 PDZ domain-like
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 3 1 SCOP 54980 EF-G C-terminal domain-like
6 6 3 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 5 2 1 SCOP 56042 PurM C-terminal domain-like
6 5 2 1 SCOP 55326 PurM N-terminal domain-like
6 2 1 1 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 3 5 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
5 5 3 2 SCOP 75217 alpha/beta knot
5 5 4 0 SCOP 51261 Duplicated hybrid motif
5 5 3 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
5 5 2 2 SCOP 53720 ALDH-like
5 5 2 3 SCOP 52096 ClpP/crotonase
5 5 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
5 4 3 0 SCOP 117143 Flagellar hook protein flgE
5 5 3 1 SCOP 51419 PLP-binding barrel
5 4 3 1 SCOP 50475 FMN-binding split barrel
5 5 5 2 SCOP 109604 HD-domain/PDEase-like
5 4 2 1 SCOP 53807 "Helical backbone" metal receptor
5 3 2 1 SCOP 63411 LuxS/MPP-like metallohydrolase
5 5 4 1 SCOP 47781 RuvA domain 2-like
5 5 3 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 4 1 SCOP 52922 TK C-terminal domain-like
5 5 3 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 4 4 2 SCOP 51556 Metallo-dependent hydrolases
4 4 2 3 SCOP 53697 SIS domain
4 4 1 1 SCOP 52218 Flavoproteins
4 4 4 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
4 4 2 2 SCOP 53633 Carbamate kinase-like
4 4 2 1 SCOP 51395 FMN-linked oxidoreductases
4 4 3 1 SCOP 53328 Formyltransferase
4 4 4 0 SCOP 54534 FKBP-like
4 4 2 0 SCOP 56317 Carbon-nitrogen hydrolase
4 4 1 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
4 4 4 1 SCOP 81342 Transmembrane di-heme cytochromes
4 4 4 0 SCOP 141868 EAL domain-like
4 4 3 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
4 2 2 0 SCOP 49503 Cupredoxins
4 4 4 1 SCOP 81301 Nucleotidyltransferase
4 4 2 2 SCOP 50692 ADC-like
4 4 1 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
4 4 2 1 SCOP 56219 DNase I-like
4 4 2 0 SCOP 103088 OmpA-like
4 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 3 3 0 SCOP 50331 MOP-like
4 4 1 0 SCOP 74653 TolA/TonB C-terminal domain
4 4 3 0 SCOP 46565 Chaperone J-domain
4 4 4 1 SCOP 46548 alpha-helical ferredoxin
4 4 2 1 SCOP 90123 ABC transporter transmembrane region
4 4 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
4 4 2 0 SCOP 50370 Ricin B-like lectins
4 4 1 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
4 4 3 0 SCOP 103190 Sensory domain-like
4 4 4 0 SCOP 116726 TrkA C-terminal domain-like
4 4 2 1 SCOP 50621 Alanine racemase C-terminal domain-like
4 4 2 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
4 1 1 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
4 2 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
3 3 1 1 SCOP 53474 alpha/beta-Hydrolases
3 3 3 1 SCOP 53613 Ribokinase-like
3 3 1 1 SCOP 52141 Uracil-DNA glycosylase-like
3 3 1 0 SCOP 54197 HIT-like
3 3 3 1 SCOP 56300 Metallo-dependent phosphatases
3 3 1 2 SCOP 47240 Ferritin-like
3 3 2 0 SCOP 100950 NagB/RpiA/CoA transferase-like
3 3 3 0 SCOP 52980 Restriction endonuclease-like
3 3 3 1 SCOP 55821 YrdC/RibB
3 3 3 2 SCOP 56770 HydA/Nqo6-like
3 3 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
3 3 1 2 SCOP 56796 Dehydroquinate synthase-like
3 3 3 0 SCOP 50182 Sm-like ribonucleoproteins
3 3 1 0 SCOP 50978 WD40 repeat-like
3 2 2 2 SCOP 51726 UROD/MetE-like
3 3 3 1 SCOP 53649 Alkaline phosphatase-like
3 2 2 1 SCOP 54506 Diaminopimelate epimerase-like
3 3 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
3 3 2 0 SCOP 51182 RmlC-like cupins
3 3 2 0 SCOP 88713 Glycoside hydrolase/deacetylase
3 3 3 0 SCOP 55008 HMA, heavy metal-associated domain
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 3 3 1 SCOP 54631 CBS-domain pair
3 3 3 1 SCOP 56601 beta-lactamase/transpeptidase-like
3 3 2 0 SCOP 46955 Putative DNA-binding domain
3 3 1 0 SCOP 143011 RelE-like
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 3 3 0 SCOP 50341 CheW-like
3 3 1 0 SCOP 47413 lambda repressor-like DNA-binding domains
3 2 2 0 SCOP 57783 Zinc beta-ribbon
3 3 1 1 SCOP 81901 HCP-like
3 3 1 1 SCOP 56954 Outer membrane efflux proteins (OEP)
3 3 1 0 SCOP 51206 cAMP-binding domain-like
3 3 2 1 SCOP 161111 Cation efflux protein transmembrane domain-like
3 3 2 2 SCOP 56762 HydB/Nqo4-like
3 3 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 3 3 1 SCOP 53955 Lysozyme-like
3 3 3 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 3 2 1 SCOP 111369 HlyD-like secretion proteins
3 3 1 1 SCOP 118215 Proton glutamate symport protein
3 3 3 0 SCOP 101801 Surface presentation of antigens (SPOA)
3 2 2 2 SCOP 53901 Thiolase-like
3 3 2 0 SCOP 103515 Autotransporter
3 3 3 0 SCOP 103039 CheC-like
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
3 3 2 1 SCOP 51246 Rudiment single hybrid motif
3 3 3 0 SCOP 56176 FAD-binding/transporter-associated domain-like
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 3 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
3 3 3 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 1 SCOP 53167 Purine and uridine phosphorylases
2 2 2 1 SCOP 53927 Cytidine deaminase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 1 SCOP 64182 DHH phosphoesterases
2 2 1 1 SCOP 51658 Xylose isomerase-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 0 SCOP 47336 ACP-like
2 2 2 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 0 SCOP 51730 FAD-linked oxidoreductase
2 2 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
2 2 1 1 SCOP 48150 DNA-glycosylase
2 2 2 1 SCOP 54292 2Fe-2S ferredoxin-like
2 2 2 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 0 SCOP 55811 Nudix
2 2 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
2 2 2 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
2 2 1 0 SCOP 54285 MoaD/ThiS
2 2 2 1 SCOP 142695 RibA-like
2 2 1 1 SCOP 56655 Carbohydrate phosphatase
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 2 1 SCOP 64307 SirA-like
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 2 0 SCOP 75169 DsrEFH-like
2 2 1 1 SCOP 56801 Acetyl-CoA synthetase-like
2 2 1 0 SCOP 55469 FMN-dependent nitroreductase-like
2 2 2 2 SCOP 56672 DNA/RNA polymerases
2 2 2 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
2 2 1 1 SCOP 56634 Heme-dependent catalase-like
2 2 1 1 SCOP 56322 ADC synthase
2 2 2 0 SCOP 54001 Cysteine proteinases
2 2 2 0 SCOP 48403 Ankyrin repeat
2 2 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 2 1 0 SCOP 52972 ITPase-like
2 2 2 1 SCOP 51126 Pectin lyase-like
2 2 1 0 SCOP 52266 SGNH hydrolase
2 2 2 0 SCOP 52151 FabD/lysophospholipase-like
2 2 2 0 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 1 SCOP 102405 MCP/YpsA-like
2 2 1 0 SCOP 143243 Nqo5-like
2 2 2 1 SCOP 51998 PFL-like glycyl radical enzymes
2 2 2 0 SCOP 47598 Ribbon-helix-helix
2 2 1 0 SCOP 55331 Tautomerase/MIF
2 2 2 0 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 0 SCOP 55166 Hedgehog/DD-peptidase
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 1 SCOP 54913 GlnB-like
2 2 2 1 SCOP 54736 ClpS-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 2 0 SCOP 158442 DsbB-like
2 2 1 1 SCOP 51391 Thiamin phosphate synthase
2 2 2 0 SCOP 88697 PUA domain-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 2 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
2 2 2 1 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 2 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
2 2 1 1 SCOP 161070 SNF-like
2 2 1 0 SCOP 50486 FMT C-terminal domain-like
2 2 1 0 SCOP 53163 HybD-like
2 1 1 0 SCOP 89963 YajQ-like
2 2 2 1 SCOP 51604 Enolase C-terminal domain-like
2 1 1 1 SCOP 56024 Phospholipase D/nuclease
2 2 2 0 SCOP 89155 TorD-like
2 2 2 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 2 0 SCOP 158791 MgtE N-terminal domain-like
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 0 SCOP 52743 Subtilisin-like
2 2 1 0 SCOP 81923 Double Clp-N motif
2 1 1 0 SCOP 54106 LysM domain
2 2 2 0 SCOP 160544 EscU C-terminal domain-like
2 2 2 0 SCOP 47188 Hemerythrin-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 1 1 0 SCOP 49265 Fibronectin type III
2 2 1 0 SCOP 158472 HAMP domain-like
2 1 1 1 SCOP 53681 Aspartate/glutamate racemase
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 1 1 1 SCOP 48029 FliG
2 2 1 1 SCOP 140990 FtsH protease domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 1 1 0 SCOP 143968 UbiD C-terminal domain-like
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 0 SCOP 81891 Poly A polymerase C-terminal region-like
2 1 1 0 SCOP 63380 Riboflavin synthase domain-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 0 SCOP 110997 Sporulation related repeat
2 2 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
2 2 2 0 SCOP 63882 MoeA N-terminal region -like
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 1 1 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 1 1 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 142433 CinA-like
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 50129 GroES-like
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 117130 CsrA-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 117991 YbeD/HP0495-like
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 50891 Cyclophilin-like
1 1 1 1 SCOP 88723 PIN domain-like
1 1 1 0 SCOP 54427 NTF2-like
1 1 1 0 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 1 SCOP 51445 (Trans)glycosidases
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 1 SCOP 49329 Cu,Zn superoxide dismutase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 1 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 56529 FAH
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 46458 Globin-like
1 1 1 0 SCOP 144091 Rhomboid-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 69118 AhpD-like
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 1 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 54909 Dimeric alpha+beta barrel
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 143120 YefM-like
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 51679 Bacterial luciferase-like
1 1 1 0 SCOP 56349 DNA breaking-rejoining enzymes
1 1 1 0 SCOP 160246 EspE N-terminal domain-like
1 1 1 0 SCOP 50022 ISP domain
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 1 SCOP 64167 SurE-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 110710 TTHA0583/YokD-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 53822 Periplasmic binding protein-like I
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 110087 DR1885-like metal-binding protein
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 0 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
1 1 1 0 SCOP 159594 XCC0632-like
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 1 SCOP 56821 Prismane protein-like
1 1 1 0 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 1 SCOP 50814 Lipocalins
1 1 1 0 SCOP 101116 Flagellar export chaperone FliS
1 1 1 0 SCOP 141457 BH3618-like
1 1 1 1 SCOP 101874 YceI-like
1 1 1 0 SCOP 56925 OMPA-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 103247 TT1751-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 74863 Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
1 1 1 0 SCOP 101498 Anti-sigma factor FlgM
1 1 1 0 SCOP 142906 YjbR-like
1 1 1 1 SCOP 50974 Nitrous oxide reductase, N-terminal domain
1 1 1 0 SCOP 52738 Methylesterase CheB, C-terminal domain
1 1 1 0 SCOP 75708 Chemotaxis phosphatase CheZ
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 101756 Hypothetical protein YgiW
1 1 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
1 1 1 0 SCOP 48008 GntR ligand-binding domain-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
1 1 1 0 SCOP 101898 NHL repeat
1 1 1 0 SCOP 160214 FlaG-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 0 SCOP 82057 Prokaryotic SH3-related domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 1 SCOP 56931 Outer membrane phospholipase A (OMPLA)
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 160387 NosL/MerB-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 158752 HP0242-like
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 1 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
1 1 1 1 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 0 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 51120 beta-Roll
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 51984 MurCD N-terminal domain
1 1 1 0 SCOP 103647 TSP type-3 repeat
1 1 1 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 74778 Aconitase B, N-terminal domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 1 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Hypothetical protein Yml108w
SCOP superfamily Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor
SCOP superfamily E set domains
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Photosystem I subunit PsaD
SCOP superfamily BAG domain
SCOP superfamily MurE/MurF N-terminal domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Bacterial hemolysins
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily Multimerization domain of the phosphoprotein from sendai virus
SCOP superfamily Rotavirus nonstructural proteins
SCOP superfamily Coiled-coil dimerization domain from cortexillin I
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Tropomyosin
SCOP superfamily Inovirus (filamentous phage) major coat protein
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily Rubredoxin-like
SCOP superfamily Hairpin loop containing domain-like
SCOP superfamily Upper collar protein gp10 (connector protein)
SCOP superfamily Sporulation response regulatory protein Spo0B
SCOP superfamily Profilin (actin-binding protein)
SCOP superfamily Protease propeptides/inhibitors
SCOP superfamily FAD-linked reductases, C-terminal domain
SCOP superfamily Fe-only hydrogenase
SCOP superfamily Cryptochrome/photolyase, N-terminal domain
SCOP superfamily SpoIIaa-like
SCOP superfamily RNI-like
SCOP superfamily Regulatory protein AraC
SCOP superfamily Quinoprotein alcohol dehydrogenase-like
SCOP superfamily HSP20-like chaperones
SCOP superfamily Cna protein B-type domain
SCOP superfamily ARM repeat
SCOP superfamily Ras GEF
SCOP superfamily GTPase activation domain, GAP
SCOP superfamily DNA repair protein MutS, domain III
SCOP superfamily t-snare proteins
SCOP superfamily Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP superfamily SWIB/MDM2 domain
SCOP superfamily Calponin-homology domain, CH-domain
SCOP superfamily EF-hand
SCOP superfamily HSC20 (HSCB), C-terminal oligomerisation domain
SCOP superfamily CHY zinc finger-like
SCOP superfamily YfgJ-like
SCOP superfamily AF1531-like
SCOP superfamily Lp2179-like
SCOP superfamily FLJ32549 C-terminal domain-like
SCOP superfamily SMI1/KNR4-like
SCOP superfamily V-type ATPase subunit E-like
SCOP superfamily BLRF2-like
SCOP superfamily Dhaf3308-like
SCOP superfamily TBP-interacting protein-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily occludin/ELL-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily YwmB-like
SCOP superfamily Transposase IS200-like
SCOP superfamily CAC2185-like
SCOP superfamily MFPT repeat-like
SCOP superfamily PilZ domain-like
SCOP superfamily FlgN-like
SCOP superfamily Endosomal sorting complex assembly domain
SCOP superfamily Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily MIT domain
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily OmpH-like
SCOP superfamily Mitochondrial ATP synthase coupling factor 6
SCOP superfamily Ligand-binding domain in the NO signalling and Golgi transport
SCOP superfamily PhoU-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Preprotein translocase SecE subunit
SCOP superfamily NAC domain
SCOP superfamily PAZ domain

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