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Candidatus Zinderia insecticola CARI superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Candidatus Zinderia; Candidatus Zinderia insecticola; Candidatus Zinderia insecticola CARI

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 202 total
188 (93 %) with assignment
308 average length
83 % amino acid coverage
Domains: 284 total
172 unique superfamilies
82 unique families
275 average length
1.7 average superfamily size
39 % formed by duplication
Domain combinations: 76 domain pairs
162 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

13 12 11 2 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
11 8 5 2 SCOP 50249 Nucleic acid-binding proteins
11 11 10 1 SCOP 55681 Class II aaRS and biotin synthetases
8 8 7 1 SCOP 52374 Nucleotidylyl transferase
7 6 6 3 SCOP 54211 Ribosomal protein S5 domain 2-like
6 6 3 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
6 5 5 2 SCOP 50447 Translation proteins
5 4 4 1 SCOP 51905 FAD/NAD(P)-binding domain
5 5 1 2 SCOP 51366 Ribulose-phoshate binding barrel
4 4 2 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
4 4 3 0 SCOP 54862 4Fe-4S ferredoxins
4 4 4 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
4 2 2 1 SCOP 54980 EF-G C-terminal domain-like
3 3 2 1 SCOP 50104 Translation proteins SH3-like domain
3 3 1 2 SCOP 53383 PLP-dependent transferases
3 3 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 1 1 0 SCOP 55979 DNA clamp
3 2 2 0 SCOP 63380 Riboflavin synthase domain-like
2 2 1 1 SCOP 52317 Class I glutamine amidotransferase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 0 SCOP 52833 Thioredoxin-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 0 SCOP 55120 Pseudouridine synthase
2 1 1 1 SCOP 53067 Actin-like ATPase domain
2 2 1 0 SCOP 143800 L28p-like
2 1 1 0 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
2 2 2 1 SCOP 53098 Ribonuclease H-like
2 2 1 0 SCOP 89360 HesB-like domain
2 2 2 0 SCOP 50715 Ribosomal protein L25-like
2 2 2 0 SCOP 54292 2Fe-2S ferredoxin-like
2 1 1 1 SCOP 51726 UROD/MetE-like
2 2 2 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
2 1 1 0 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 1 1 1 SCOP 53901 Thiolase-like
2 2 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 1 1 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
2 2 2 0 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 1 SCOP 53474 alpha/beta-Hydrolases
1 1 1 1 SCOP 53271 PRTase-like
1 1 1 0 SCOP 53927 Cytidine deaminase-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 0 SCOP 74982 Small protein B (SmpB)
1 1 1 0 SCOP 53613 Ribokinase-like
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 1 SCOP 51735 NAD(P)-binding Rossmann-fold domains
1 1 1 0 SCOP 56784 HAD-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 64182 DHH phosphoesterases
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 75620 Release factor
1 1 1 0 SCOP 47336 ACP-like
1 1 1 1 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 1 SCOP 82649 SufE/NifU
1 1 1 0 SCOP 75217 alpha/beta knot
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 0 SCOP 50129 GroES-like
1 1 1 1 SCOP 53850 Periplasmic binding protein-like II
1 1 1 0 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 1 SCOP 56770 HydA/Nqo6-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 102114 Radical SAM enzymes
1 1 1 1 SCOP 142695 RibA-like
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 0 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 81452 Cytochrome c oxidase subunit III-like
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 55315 L30e-like
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 0 SCOP 141734 HisI-like
1 1 1 1 SCOP 55931 Glutamine synthetase/guanido kinase
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 46955 Putative DNA-binding domain
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 0 SCOP 49503 Cupredoxins
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 1 SCOP 56762 HydB/Nqo4-like
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
1 1 1 0 SCOP 103025 Folate-binding domain
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 1 SCOP 52777 CoA-dependent acyltransferases
1 1 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 1 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Anticodon-binding domain of PheRS
SCOP superfamily Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP superfamily AF1531-like
SCOP superfamily Apyrase

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